BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G32717.1
Length=270
Score E
Sequences producing significant alignments: (Bits) Value
Ahg328460 jgi|Araly1|328460|fgenesh1_pm.C_scaffold_7000687 399 4e-111
> Ahg328460 jgi|Araly1|328460|fgenesh1_pm.C_scaffold_7000687
Length=264
Score = 399 bits (216), Expect = 4e-111
Identities = 247/262 (94%), Gaps = 2/262 (1%)
Strand=Plus/Plus
Query 1 ATGAGATCTGTTATTTGGTTTATAGTTTCTTATACTCTCATGTTACTCGTTCTGAGAGGT 60
||||||||||||| |||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct 1 ATGAGATCTGTTACTTGGTTTATAGTTTCTTATATTCTCATGTTTCTCGTTCTGAGAGGT 60
Query 61 GGTAAAGAAGTGGAAGCTGAGAAACTGTGTACAACGATAGGAGACTTGGACGGTAAATGT 120
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 61 GGTAAAGAAGTGGAAGCAGAGAAACTGTGTACAACAATAGGAGACTTGGACGGTAAATGT 120
Query 121 AGCCAA-GACGGAGAAAAGTTGTGCATGAGATACATGACTGATCAATCTaaaaaaaaGTT 179
||| || |||||||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct 121 AGC-AATGACGGAGAAAAGATGTGCATGAGATACATGACGGATCAATCTAAAAAAAAGTT 179
Query 180 TCTTAGCTGCACATGTAATAACGTTGTTATGTTACACAAGTACAAACATTATTGCGAATG 239
|||||| |||||||| ||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 180 TCTTAGTTGCACATGCAATAACGTTATCATGTTACACAAGTACAAACATTATTGCGAATG 239
Query 240 TCAATCTCATTGTACTCCAAAA 261
| |||||||||||||||| |||
Sbjct 240 TAAATCTCATTGTACTCCTAAA 261
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 9432500467
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5