BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G32720.1
Length=1624
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491436 jgi|Araly1|491436|fgenesh2_kg.7__869__AT4G32720.1 2447 0.0
> Ahg491436 jgi|Araly1|491436|fgenesh2_kg.7__869__AT4G32720.1
Length=1599
Score = 2447 bits (1325), Expect = 0.0
Identities = 1524/1617 (94%), Gaps = 25/1617 (2%)
Strand=Plus/Plus
Query 4 AGAAAATGGAAACTGTG--TCTCAATAAACCCTAGTACCCTTTTTCTCTCTTATTCTTCT 61
||||||||||||||||| ||||| ||||||||||| ||| || |||| ||| ||||
Sbjct 1 AGAAAATGGAAACTGTGTCTCTCACTAAACCCTAGT-CCC--CTT-TCTCAAATT-TTCT 55
Query 62 ATCTTCCTCCTCCTCTATCTTTCGCTCGAGCCATTGAGCAATTATGTCGATTCCTTGTCT 121
|| | ||| ||||| | || ||||||||| ||| ||||||||||||||||||||||
Sbjct 56 -TC-T-CTCTTCCTC---C--TC-CTCGAGCCAGTGAACAATTATGTCGATTCCTTGTCT 106
Query 122 AACCGAAGAGACAGCCAAAACTGTTCTTCGCCAGGTGGAGTTCTATTTCAGTGATAGTAA 181
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 107 AACCGAAGAGACAGCCAAAACTGTTCTTCGCCAGGTGGAGTTCTACTTCAGTGATAGTAA 166
Query 182 TCTACCCATTGATGATTTCCTCAAGAAGACTGTTACAGAGAGCGAAGATGGCTTGGTGAG 241
||| || ||||||||||||||||||||||| || |||||||| |||||||||||||||||
Sbjct 167 TCTTCCAATTGATGATTTCCTCAAGAAGACGGTCACAGAGAGTGAAGATGGCTTGGTGAG 226
Query 242 TTTGGCGTTGATTTGCTCCTTTAGTAAGATGAGAGGATATTTGAAGTTGGGTGATTCTAA 301
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 227 TTTGGCGTTGATTTGCTCCTTCAGTAAGATGAGAGGATATTTGAAGTTGGGCGATTCTAA 286
Query 302 AGGAGATGATATTCCTGAAGATACCATCAAAGCTGTTGCTGATACTCTTCGAACCTCTTC 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 287 AGGAGATGATATTCCTGAAGATACCATCAAAGCTGTTGCTGATACTCTTCGAACCTCTTC 346
Query 362 TGCTCTCAAGATTTCTGACGATGGGAAAAAGGTTGGTAGGAGTACTGAATTGTTGAAGCT 421
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 347 TGCTCTCAAGATTTCAGAAGATGGGAAAAAGGTTGGTAGGAGTACTGAATTGTTGAAGCT 406
Query 422 GGAAGATTTGATTGAGCAACTTAATGCTAGAACAGTAGCTGCGTCACCTTTCTCCTATGA 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 407 GGAAGATTTGATTGAGCAACTTAATGCTAGAACAGTAGCTGCGTCACCTTTCTCCTATGA 466
Query 482 TGTTAAAAGGGAAGACGTGGAATCCTTTTTCAGTCAGTATGGAAAGGTTAATAGTGTGAG 541
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 467 TGTTAAAAGAGAAGATGTGGAATCCTTTTTCAGTCAGTATGGAAAGGTTAATAGTGTGAG 526
Query 542 GATGCCTCGTCATGTTGCAGAGTCGAGGATATTTTCTGGTGTTGCCTTGGTTGAGTTCCC 601
|||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||| ||
Sbjct 527 GATGCCTCGTCATGTTGCAGAGTCAAGGATATTTTCCGGTGTTGCCTTAGTTGAGTTTCC 586
Query 602 TACAGAAGAGGATGCCCAGAATGTTATGAAGCAGAATTTGGTCTTTGCTGGTCAGGAGTT 661
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 587 TACAGAAGAGGATGCCCAGAATGTTATGAAGCAAAATTTGGTCTTTGCTGGTCAGGAGTT 646
Query 662 GGAGCTGAAACCAAAGAAAGAGTTTGATAATGAAAGGGAGAAGGATGAAGTAAAATTTGC 721
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 647 GGAGCTGAAACCAAAGAAAGAGTTTGATAATGAAAGGGAGAAGGATGAAGTAAAATTTGC 706
Query 722 TAATTACCAACCTCAGAAGGGATCTGCAAATCAGAAGAATGGTTCTGATCACAAAAACAA 781
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 707 TAATTACCAACCTCAAAAGGGATCTGCAAATCAGAAGAATGGTTCTGATCACAAAAACAA 766
Query 782 TTCTGCTTATGAGCCAGATTATCCCAAGGGTTTGATCATTTCATTCACCCTCAAGCGTTC 841
||||| ||||||||||||||||||||||||||||||||||||||||||| | ||||| ||
Sbjct 767 TTCTGATTATGAGCCAGATTATCCCAAGGGTTTGATCATTTCATTCACCTTGAAGCGCTC 826
Query 842 AGCTGAAGAGGGTACCACGGAACAAAAAAGTTCTGAGGAGCCAACTGATAAGACAATGGA 901
||||||||||||||||||||||||||||| |||||||||| |||||||||| ||||||||
Sbjct 827 AGCTGAAGAGGGTACCACGGAACAAAAAAATTCTGAGGAGACAACTGATAAAACAATGGA 886
Query 902 AGAAAGTGAAACAAAGCCAGCAGATACTCCTGATGCTGATAAAGAAAACACTGGTGAGGT 961
||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 887 TGAAAGTGAATCAAAGCCAGCAGATACTCCTGATGCTGATAAAGAAAACACTGATGAAGT 946
Query 962 TCAGGCCGAGGGAGCAGAGGATGAAGATGATGAGAAAGAAGAAAAGGGTGCTCTAGCCAC 1021
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 947 TCAGGCCCAGGGAGCAGAGGATGAAGATGATGAGAAAGAAGAAAAGGGTGCTCTAGCTAC 1006
Query 1022 CCATAAAGATAATAAGGATGTTGTCTTACGTGAAGATCTTAAGGCTGTTTTCGGAAAATT 1081
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1007 CCATAAAGATAATAAAGATGTTGTCTTACGCGAAGATCTTAAGGCTGTTTTCGGAAAATT 1066
Query 1082 TGGTGATGTCAAGTTTGTTGATTTCAAGATGGGATCTGAGACGGGTTATCTTAGGTTTGA 1141
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 1067 TGGTGATGTCAAGTTTGTGGATTTCAAGATGGGATCTGAGACGGGTTACCTTAGGTTTGA 1126
Query 1142 TGAACCTGAAGCATCCCAGAAAGCCCGTGCAGCAGCAGTATTAGCCAATGAAGGTGGACT 1201
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 1127 TGAACCTGAAGCATCCCAGAAAGCGCGTGCAGCAGCAGTATTAGCCAAAGAAGGTGGACT 1186
Query 1202 AGCCGTGAAGAATTTTATTGCTGTCCTAGAACCTGTTATTGGCGAAGCTGAAAAGGAGTA 1261
|||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct 1187 AGCCGTGAAGAATTTTATCGCTGTCCTAGAACCTGTTACCGGCGAAGCTGAAAAGGAGTA 1246
Query 1262 TTGGACTCTCCTACGAAGCAAAGATCGGTTTGACAAGGGTGGCCGTggaggaaggggagg 1321
|||||||||||| || ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1247 TTGGACTCTCCTTCGCAGCAAAGATAGGTTTGACAAGGGTGGCCGTGGAGGAAGGGGAGG 1306
Query 1322 aagaagaggagggagattcgggagaaagaggggaTCAGATTCACCGGGTGGTCGCTGGAA 1381
|||||||||||||||||||||| | ||||||||||| ||||| || ||||||||||||||
Sbjct 1307 AAGAAGAGGAGGGAGATTCGGGCGTAAGAGGGGATCGGATTCCCCAGGTGGTCGCTGGAA 1366
Query 1382 CAAATCTCAGAAGGTGGAAGCATGAGAGATTTCGCTCGTGACTGCTTCTGTTTTTCAATA 1441
|||||||||||| ||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 1367 CAAATCTCAGAAAGTGGAAGCATGAGAGCTTTCGCTCGTGACTGCTTCTGTTTTT-AATA 1425
Query 1442 TATTT-CTAGTTGCAACTTTAA-ATTTAATGTATCGACTGGTGACTC--GTGATGTTATA 1497
||||| | |||||||||||||| ||| | | | || ||| ||||||| |||||||||||
Sbjct 1426 TATTTTCCAGTTGCAACTTTAATATT-A-T-TCTCTACTTGTGACTCTTGTGATGTTATA 1482
Query 1498 ACTAGAAATAGCTGCTTATTTGGCAAATTTTGGTTTAGTCATATTTGGTATTGTTTTGTT 1557
||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| ||
Sbjct 1483 ACTAGAAATAGCTGCTTATTTAGCAAATTTTGGTTTAGTCATATTTGGTTTTGTTTTATT 1542
Query 1558 TA-GCTTTATGTGCCTTCTTATGCACACATCTCTTTCCTTAATTATTTTAAATCGAT 1613
| |||||||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 1543 TGCGCTTTATGTGCCTTCTTATGCACATTTCTCTTTCCTTAATTATTTAAAATCGAT 1599
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60868211510
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5