BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G32750.1
Length=1475
Score E
Sequences producing significant alignments: (Bits) Value
Ahg944677 jgi|Araly1|944677|scaffold_700906.1 1476 0.0
> Ahg944677 jgi|Araly1|944677|scaffold_700906.1
Length=922
Score = 1476 bits (799), Expect = 0.0
Identities = 886/927 (96%), Gaps = 9/927 (1%)
Strand=Plus/Plus
Query 143 ttttttttt-tGTGTTTC-TTCAATGGCGATCATTGGAGATGCGTTGCGTCAAGCGTTTA 200
||||||||| | || ||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct 2 TTTTTTTTTAT-TGCTTCTTTCAATGGCGATCATTGGAGACGCGTTGCGTCAAGCGTTTA 60
Query 201 TGCCAAAGCAAGAGTACGAGAGCCTTAGGGAAGAAGATAGAGCCTGGATTAAGCTTCAGA 260
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 61 TGCCAAAGCAAGAGTACGAGAGCCTTAGGGAAGAAGATAGAGCCTTGATTAAGCTTCAGA 120
Query 261 GGCCGACTTTAGTCTCGATCGTGGCTTTCCTTTGTTTTGTCATCTTCACTTGCACGATCG 320
|||| || ||| | || ||||||||||| ||| | |||||||||||||||||||||||||
Sbjct 121 GGCCCACATTAATGTCTATCGTGGCTTTACTTAGCTTTGTCATCTTCACTTGCACGATCG 180
Query 321 TCAGCTTGAAAATTGTATTTCCTTCGAATGTTCTTAAGAGGCCATTTTGCAGCGACATAA 380
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |
Sbjct 181 TCAGCTTGAAAATTGTATTTCCTTCGAATGTTCTAAAGAGGCCATTTTGCAGCGACGTGA 240
Query 381 AGCTACAACCTTTGCCTATCTATGGCAAAGCTCGTGACTCCGATCTCTTTCCCGGTGCTT 440
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 241 AGCTACAACCTTTGCCTATCTATGGCAAAGCTCGTGACTCCGATCTGTTTCCCGGTGCTT 300
Query 441 TTTACTTGACCGATCAAGAAACTGTTGATTATTACTGGATGGTCGTTTTCGTTCCCTCGA 500
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 301 TTTACTTGACGGATCAAGAAACTGTGGATTATTACTGGATGGTCGTTTTCGTTCCCTCGA 360
Query 501 CTATAATTTTCCTTGTATCATCTGTTTATCTTGTAGCAGGAATTTTTGTGGCTTATTCCG 560
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CCATAATTTTCCTTGTATCATCTGTTTATCTTGTAGCAGGAATTTTTGTGGCTTATTCCG 420
Query 561 CTCCTCACCGTCATGGGTTTCTAAAAGTCGTTGAAAATAACTACTGTGCTTCAAGAAGAG 620
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 421 CCCCTCACCGTCATGGGTTTCTAAAAGTAGTTGAAAATAACTACTGTGCTTCAAGAAGAG 480
Query 621 GTGGGGTCCGTTGTCTGTCAATTCTGAATGTTGTGTTTGCTATCATCTATGGTCTCCTTG 680
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 481 GTGGGGTCCGATGTCTGTCAATTCTGAATGTTGTCTTTGCTATCATCTATGGTCTACTTG 540
Query 681 CTATATTTCTCGGCTCAAGCCTCCTCACATTAGGAAGCAGCTGTTCTGTGCCTTTGTTTT 740
||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 541 CTATATTTCTCGGCTCAAGCCTCCTGACACTAGGAAGCAGCTGTTCTGTGCCTTTGTTTT 600
Query 741 GGTGCTACGAGATTTCTTCATGGGGTTTAGTAATCTTGTATGCTGGAACTGCTTTCTCCC 800
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 601 GGTGCTACGAGATTTCTTCATGGGGTTTGGTAATCTTGTATGCTGGAACTGCTTTCTCCC 660
Query 801 TTAGAAGAAGAGCTGCTTTAACTATTGACGAAGGAGAGTTTGGGAACAGAAATGATCAGG 860
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 661 TTAGAAGAAGAGCTGCTTTAACTATTGACGAAGGAGAGTTTGGGAACGGAAATGATCAGG 720
Query 861 GCTTGGAGATGCTTGAAGCTAATCCGTTGGAATTCACACCAGACGTTGAAAGACGAGTGA 920
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 721 GCTTGGAGATGCTTGAAGCTAATCCTTTGGAATTCACACCAGACGTTGAAAGACGAGTGA 780
Query 921 ACGAGGGGTTTAAAGCATGGATGGGACCATCTTTATTATCATCTGATGAAGAAGAAGACG 980
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 781 ACGAGGGGTTTAAAGCATGGATGGGACCATCTTTGTTATCATCTGATGAAGAAGA---CG 837
Query 981 AACCTGACTTTTACAATGAAGTGCCGAATGTAACTCATACTCTTTCAAGCAGGCAAAGAT 1040
||||||| ||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 838 AACCTGATTTTTACAATGAGGTGCCGAATGTAACTCGTACTCTTTCAAGCAGGCAAAGAT 897
Query 1041 CTTGATTCTTGCA-AAGAAGAATTTGG 1066
||||||||||| | || ||||||||||
Sbjct 898 CTTGATTCTTG-AGAA-AAGAATTTGG 922
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55192765005
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5