BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G32780.1
Length=887
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491429 jgi|Araly1|491429|fgenesh2_kg.7__862__AT4G32780.1 1397 0.0
> Ahg491429 jgi|Araly1|491429|fgenesh2_kg.7__862__AT4G32780.1
Length=918
Score = 1397 bits (756), Expect = 0.0
Identities = 840/881 (95%), Gaps = 4/881 (0%)
Strand=Plus/Plus
Query 8 GGAATCAATTTTTCATATATAGCCAAAGTCACATAGTGATTCTTCTCCAATCAAATCTCT 67
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GGAATCAA-TTTTCATATATAGCCAAAGTCACATAGTGATTCTTCTCCAATCAAATCTCT 59
Query 68 ATCAACAATGACAAGCTTGCACAAAACCCTCTTCACACAAAATCCCACTACTTTAGATCA 127
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 60 ATCAACAATGACAAGTTTGCACAAAACCCTCTTCACACAAAATCCTACTACTTTAGATCA 119
Query 128 ACTCATGATGTGCCACACGGGAAGAGACAATTCATGGAAAAAACTAGAAAACATAGACGA 187
||| ||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 120 ACTAATGATGTGCCATACGGGAAGAGATAATTCATGGAAAAAACTAGAGAACATAGACGA 179
Query 188 AGAAGGTCCATCGACGGTGGCACGTGAAGTGAGGACGGCGTTACCACCGGAGACGCCAAC 247
|||||||||| || |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 180 AGAAGGTCCAGCGGCGGTGGCACGTGAAGTGAAGACGGCGTTACCACCGGAGACGCCAAC 239
Query 248 GGAGATGATGGAGTTCTTGGGGAGATCATGGAGCATTTCCGCCGTCGAACTCACGAGAGC 307
||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 240 GGAGACGATGGAGTTTTTGGGGAGATCATGGAGCATTTCCGCCGTCGAACTCACAAGAGC 299
Query 308 TTTTTTCAACAATTCCACTGCCGACACTAACTCTTTTCTTCTATCTACTATCGTTAACAC 367
||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 300 TTTCTTCAACAATTCCACTGCCGACACCAACTCTTTTCTTCTATCTACTATTGTTAACAC 359
Query 368 CAACAAAGAAGACAGAGAAGATGAAGAAGATTCTACTTCCATGGCTTCTTCTCGTGACCT 427
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 360 CAACAAAGAAGACAGAGAAAATGAAGAAGATTCTACTTCCATGGCTTCTTCTCGTGACCT 419
Query 428 TCTGCTGCCACATGTGGGAAATAAGACCAGCCCTCCAATAACTCCAAGAACCGGTAGAGA 487
||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 420 TCTGCTGCCACATATGGGAAATAAGACCAGCCCTCCAATAACTCCAAGAACCGGCAGAGA 479
Query 488 AATGAAGCATTTGTACAAGAGCATGATaagaggaagaacaatgggaagaagattaaagga 547
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 AATGAAGCATTTGTACAAGAGCATGATAAGAGGAAGAACAATGGGAAGAAGATTAAAGGA 539
Query 548 tcagaaggagaagaagaaacaagagaccagaaCTCGCAACGCTGAGATTCACGCCGCGGT 607
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 540 TCAGAAGGAGAAGAAGAAACAAGAGACCCGAACTCGCAACGCTGAGATTCACGCCGCGGT 599
Query 608 CTCTGTCGCAGGAGTAGCTGCAGTTGTTGCCGCAACCGCAGCATCTAACGCTATTGCGGC 667
|||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||
Sbjct 600 CTCTGTCGCAGGAGTAGCCGCGGTTGTAGCCGCAACCGCAGCATCTAACGCTATTGCGGC 659
Query 668 CGCAGAAG-ATGCGGTTGAATCAACAACCGTTGCAGCTGCAATGGCATCTGCAGCTGCTC 726
||||| | ||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct 660 TGCAGA-GCATGCGGTTGAATCAACAACCGTTGCAGCTGCGGTGGCGTCTGCAGCTGCTC 718
Query 727 TCATCGCTTCACATTGCATCGAGATAGCGGGAGAGATTGGGGCGGGTTATAACCAGATTG 786
| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 719 TTATCGCTTCACATTGCATCGAGATAGCAGGAGAGATAGGGGCGGGTTATAACCAGATTG 778
Query 787 CCACGGCTGTTAGCTCCGCGACCAATGCTAGGACTAACGGAGACATTATGGCTTTAACGG 846
||||||||||||||||||||||||| || ||||||||||||||| |||||||||||||||
Sbjct 779 CCACGGCTGTTAGCTCCGCGACCAACGCCAGGACTAACGGAGACGTTATGGCTTTAACGG 838
Query 847 CAAGTGCTGCAACAGGTA-TCATTTATTGTTTTCTCGCATA 886
|||||||||| ||||||| | || | ||||| |||||||||
Sbjct 839 CAAGTGCTGCGACAGGTACTAATGTCTTGTTATCTCGCATA 879
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32861954454
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5