BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G32780.1 Length=887 Score E Sequences producing significant alignments: (Bits) Value Ahg491429 jgi|Araly1|491429|fgenesh2_kg.7__862__AT4G32780.1 1397 0.0 > Ahg491429 jgi|Araly1|491429|fgenesh2_kg.7__862__AT4G32780.1 Length=918 Score = 1397 bits (756), Expect = 0.0 Identities = 840/881 (95%), Gaps = 4/881 (0%) Strand=Plus/Plus Query 8 GGAATCAATTTTTCATATATAGCCAAAGTCACATAGTGATTCTTCTCCAATCAAATCTCT 67 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 GGAATCAA-TTTTCATATATAGCCAAAGTCACATAGTGATTCTTCTCCAATCAAATCTCT 59 Query 68 ATCAACAATGACAAGCTTGCACAAAACCCTCTTCACACAAAATCCCACTACTTTAGATCA 127 ||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| Sbjct 60 ATCAACAATGACAAGTTTGCACAAAACCCTCTTCACACAAAATCCTACTACTTTAGATCA 119 Query 128 ACTCATGATGTGCCACACGGGAAGAGACAATTCATGGAAAAAACTAGAAAACATAGACGA 187 ||| ||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||| Sbjct 120 ACTAATGATGTGCCATACGGGAAGAGATAATTCATGGAAAAAACTAGAGAACATAGACGA 179 Query 188 AGAAGGTCCATCGACGGTGGCACGTGAAGTGAGGACGGCGTTACCACCGGAGACGCCAAC 247 |||||||||| || |||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 180 AGAAGGTCCAGCGGCGGTGGCACGTGAAGTGAAGACGGCGTTACCACCGGAGACGCCAAC 239 Query 248 GGAGATGATGGAGTTCTTGGGGAGATCATGGAGCATTTCCGCCGTCGAACTCACGAGAGC 307 ||||| ||||||||| |||||||||||||||||||||||||||||||||||||| ||||| Sbjct 240 GGAGACGATGGAGTTTTTGGGGAGATCATGGAGCATTTCCGCCGTCGAACTCACAAGAGC 299 Query 308 TTTTTTCAACAATTCCACTGCCGACACTAACTCTTTTCTTCTATCTACTATCGTTAACAC 367 ||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| Sbjct 300 TTTCTTCAACAATTCCACTGCCGACACCAACTCTTTTCTTCTATCTACTATTGTTAACAC 359 Query 368 CAACAAAGAAGACAGAGAAGATGAAGAAGATTCTACTTCCATGGCTTCTTCTCGTGACCT 427 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 360 CAACAAAGAAGACAGAGAAAATGAAGAAGATTCTACTTCCATGGCTTCTTCTCGTGACCT 419 Query 428 TCTGCTGCCACATGTGGGAAATAAGACCAGCCCTCCAATAACTCCAAGAACCGGTAGAGA 487 ||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 420 TCTGCTGCCACATATGGGAAATAAGACCAGCCCTCCAATAACTCCAAGAACCGGCAGAGA 479 Query 488 AATGAAGCATTTGTACAAGAGCATGATaagaggaagaacaatgggaagaagattaaagga 547 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 480 AATGAAGCATTTGTACAAGAGCATGATAAGAGGAAGAACAATGGGAAGAAGATTAAAGGA 539 Query 548 tcagaaggagaagaagaaacaagagaccagaaCTCGCAACGCTGAGATTCACGCCGCGGT 607 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 540 TCAGAAGGAGAAGAAGAAACAAGAGACCCGAACTCGCAACGCTGAGATTCACGCCGCGGT 599 Query 608 CTCTGTCGCAGGAGTAGCTGCAGTTGTTGCCGCAACCGCAGCATCTAACGCTATTGCGGC 667 |||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||| Sbjct 600 CTCTGTCGCAGGAGTAGCCGCGGTTGTAGCCGCAACCGCAGCATCTAACGCTATTGCGGC 659 Query 668 CGCAGAAG-ATGCGGTTGAATCAACAACCGTTGCAGCTGCAATGGCATCTGCAGCTGCTC 726 ||||| | ||||||||||||||||||||||||||||||| |||| ||||||||||||| Sbjct 660 TGCAGA-GCATGCGGTTGAATCAACAACCGTTGCAGCTGCGGTGGCGTCTGCAGCTGCTC 718 Query 727 TCATCGCTTCACATTGCATCGAGATAGCGGGAGAGATTGGGGCGGGTTATAACCAGATTG 786 | |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| Sbjct 719 TTATCGCTTCACATTGCATCGAGATAGCAGGAGAGATAGGGGCGGGTTATAACCAGATTG 778 Query 787 CCACGGCTGTTAGCTCCGCGACCAATGCTAGGACTAACGGAGACATTATGGCTTTAACGG 846 ||||||||||||||||||||||||| || ||||||||||||||| ||||||||||||||| Sbjct 779 CCACGGCTGTTAGCTCCGCGACCAACGCCAGGACTAACGGAGACGTTATGGCTTTAACGG 838 Query 847 CAAGTGCTGCAACAGGTA-TCATTTATTGTTTTCTCGCATA 886 |||||||||| ||||||| | || | ||||| ||||||||| Sbjct 839 CAAGTGCTGCGACAGGTACTAATGTCTTGTTATCTCGCATA 879 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 32861954454 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5