BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G32785.1

Length=524
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg888825 jgi|Araly1|888825|Al_scaffold_0007_811                     604    1e-172


> Ahg888825 jgi|Araly1|888825|Al_scaffold_0007_811
Length=375

 Score =  604 bits (327),  Expect = 1e-172
 Identities = 359/375 (96%), Gaps = 0/375 (0%)
 Strand=Plus/Plus

Query  21   ATGACTTTCGTCTCTAGAGGAGAAGAGCTTCTCAAACGCACCCGCAAAGGGGATCTTCAT  80
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGACTTTTGTCTCTAGAGGAGAAGAGCTTCTCAAACGCACCCGCAAAGGGGATCTTCAT  60

Query  81   TGGAAGCAAGTATCTTTTAACATCAATTCCAATTGGCAAGTGGTTCTTAAAATGAAGAGC  140
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  61   TGGAAGCAAGTATCTTTTAACATCAATTCAAATTGGCAAGTGGTTCTTAAAATGAAGAGC  120

Query  141  AAACATGTGGGTGGAACTTTCACGAAGACGAAGAAATGCGTTGTCAATGGAGTGTGCCGA  200
            |||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct  121  AAACATGTAGGTGGAACTTTCACAAAGACGAAGAAATGCGTGGTCAATGGAGTGTGCCGA  180

Query  201  GATATACCCGAATGGGCACATAGAGGACGAGCAGATAAAATGGTAGAGCGAAGAGCCTAC  260
            ||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||
Sbjct  181  GATATACCCGAATGGGCACATAGAGGACGAGCAGAAAAAATGGTCGAACGAAGAGCCTAC  240

Query  261  TTTGGGGTGAAAACAGTGGAAAGGGTGATTGAATTCGAATGTGGAAACAAAAGAGAGAAG  320
            |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct  241  TTTGGGGTGAAAACAGTGGAAAGGCTGATTGAGTTCGAATGTGGAAACAAAAGAGAGAAG  300

Query  321  CAAATGTGGATAGAGGGGATTCAACAGTTGCTTAACTCACTCGAAATCGGTTCTAGTGTT  380
            ||||||||||||||||||||||| ||| |||| |||||||| |||||||| |||||||||
Sbjct  301  CAAATGTGGATAGAGGGGATTCAGCAGCTGCTAAACTCACTTGAAATCGGATCTAGTGTT  360

Query  381  CAATGGAAACATTAG  395
            || ||||||||||||
Sbjct  361  CACTGGAAACATTAG  375



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19077794500


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5