BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G32790.1
Length=1925
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491427 jgi|Araly1|491427|fgenesh2_kg.7__860__AT4G32790.1 2868 0.0
Ahg493201 jgi|Araly1|493201|fgenesh2_kg.7__2634__AT4G16745.1 67.6 3e-10
> Ahg491427 jgi|Araly1|491427|fgenesh2_kg.7__860__AT4G32790.1
Length=1820
Score = 2868 bits (1553), Expect = 0.0
Identities = 1717/1796 (96%), Gaps = 12/1796 (1%)
Strand=Plus/Plus
Query 129 AGTTTAGGAGTCAG-A-AAGCAATGAAATTGTTAAGATTTGCTGGTCTTGTTTTCATTTT 186
||| || ||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 27 AGTATACGAGTCAGAAGAAGCAATGAAATTGTTAAGATTTGCTGGTCTTGTTTTCATTTT 86
Query 187 TATCACAACCTTCCAGTTTGTGAACATACGTTATTATGGTGGTGATATATTCTCTTTATC 246
|||| |||||||||| || |||||||| ||||||||||||||| ||| |||||||||||
Sbjct 87 TATCTCAACCTTCCAATTCGTGAACATCCGTTATTATGGTGGTTCTATGTTCTCTTTATC 146
Query 247 TTCTCAAGATAAGTTTCCAG-----T-ATCAATTGATGTAAGCACAGAACCCGTAAGCAC 300
|||||||||||||||||||| | |||||||||||||||||||||||||||||| ||
Sbjct 147 TTCTCAAGATAAGTTTCCAGTATCATCATCAATTGATGTAAGCACAGAACCCGTAAGGAC 206
Query 301 GTTGTCCGGTCCTGAAAGATTGAATTCTAGTAGTTCAAGATCCGTTGAGGTAGATGAAGA 360
|||||||||||||||||||||||||| ||||||||| |||||| ||||||||||||||||
Sbjct 207 GTTGTCCGGTCCTGAAAGATTGAATTTTAGTAGTTCGAGATCCATTGAGGTAGATGAAGA 266
Query 361 GGAAAGCACCGGTTTAAAAGAAGACCATGTGATTGGCTT-TGATAAGAATGACACAGTTC 419
|||||||||||| ||| ||||||||||||||||||| || ||||||||||||||||||||
Sbjct 267 GGAAAGCACCGGATTAGAAGAAGACCATGTGATTGG-TTCTGATAAGAATGACACAGTTC 325
Query 420 AAGGCCATGATAGTTTCGTAGAGGATGTCAAAGATAAGGAAACTCTTGATTTGCTTCCAG 479
||| ||||||||||||| | |||||||||||||||||||||||||||||||||||||| |
Sbjct 326 AAGCCCATGATAGTTTCATTGAGGATGTCAAAGATAAGGAAACTCTTGATTTGCTTCCTG 385
Query 480 GAACCAA-GAGCAGCTCAAACGAGAGTTACGAGAAAATAGTAGAAGATGCTGATATTGCT 538
||| || ||||||| | ||||||| ||||||||||||||||||||||||||| | ||||
Sbjct 386 GAA-TAAGGAGCAGCACCAACGAGACTTACGAGAAAATAGTAGAAGATGCTGACACTGCT 444
Query 539 TTTGAAAATATTAGGAAAATGGAGATTCTGGAGAGTAAGTCTGATCCTTCTGTTGATAAT 598
|||||||||| ||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 445 TTTGAAAATACTAGGAAAGTGGAGATTCTGGAGAGCAAGTCTGATCCTTCTGTTGATAAT 504
Query 599 CTTTCCTCAGAGGTGAAAAAGTTTATGAATGTTTCAAATTCTGGGGTGGTTTCTATCACT 658
||||||||||||||||||| ||||||||| ||||| ||||||||||||||||||||||||
Sbjct 505 CTTTCCTCAGAGGTGAAAAGGTTTATGAAGGTTTCGAATTCTGGGGTGGTTTCTATCACT 564
Query 659 GAGATGATGAATTTACTGCATCAAAGCCGCACTTCTCATGTCTCACTGAAAGTAAAACGG 718
|||||||||||||||||||||||||||| ||||||||||||||| |||||| |||||| |
Sbjct 565 GAGATGATGAATTTACTGCATCAAAGCCACACTTCTCATGTCTCGCTGAAATTAAAACAG 624
Query 719 TCTTCCACAATTGATCATGAGCTGTTATATGCAAGAACTCAAATTGAGAACCCACCGCTG 778
||||||||| ||||||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct 625 TCTTCCACAGTTGATCAAGAGCTGTTATATGCAAGATCTCAAATTGAGAACCCACCGCTG 684
Query 779 ATAGAGAACGACCCTTTACTGCATACTCCTCTGTATTGGAATCTCTCCATGTTCAAAAGG 838
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 685 ATAGAGAACGACCCTTTACTGCATACTCCTCTGTATTGGAATCTGTCCATGTTCAAAAGG 744
Query 839 AGCTATGAGCTAATGGAGAAAAAGCTCAAGGTATATGTCTACAGGGAAGGCAAAAGACCT 898
||||| ||||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 745 AGCTACGAGCTAATGGAGAGAAAGCTCAAAGTATATGTCTACAGGGAAGGCAAAAGACCC 804
Query 899 GTACTGCATAAGCCGGTGCTGAAAGGAATATATGCTTCTGAAGGATGGTTTATGAAACAA 958
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 805 GTACTGCATAAGCCGGTGCTGAAAGGAATATATGCTTCTGAGGGGTGGTTTATGAAACAA 864
Query 959 CTCAAGTCCAGCAGAACATTTGTCACAAAAGACCCTCGTAAAGCTCACCTATTTTATCTT 1018
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 865 CTCAAGTCCAGCAGAACATTTGTCACAAAAGACCCACGTAAAGCTCACCTATTTTATCTT 924
Query 1019 CCTTTCAGCTCCAAAATGTTGGAAGAAACTCTGTATGTCCCAGGTTCTCACAGCGATAAG 1078
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 925 CCTTTCAGCTCCAAAATGTTGGAAGAAACTCTGTATGTCCCAGGTTCTCACAGCGATCAG 984
Query 1079 AATCTCATTCAGTTTTTGAAGAACTACCTGGACATGATTTCTTCCAAATATAGTTTCTGG 1138
|||||||||||||| ||||| ||||||||||||||||||||||| ||||||| |||||||
Sbjct 985 AATCTCATTCAGTTCTTGAAAAACTACCTGGACATGATTTCTTCGAAATATAATTTCTGG 1044
Query 1139 AATAAAACTGGAGGATCAGATCATTTTCTGGTTGCTTGCCACGACTGGGCTCCTTCCGAG 1198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1045 AATAAAACTGGAGGATCAGATCATTTTCTGGTTGCTTGCCACGACTGGGCTCCTTCCGAG 1104
Query 1199 ACGAGGCAGTACATGGCCAAGTGCATCAGAGCATTATGCAATTCTGATGTTTCAGAAGGT 1258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1105 ACGAGGCAGTACATGGCCAAGTGCATCAGAGCATTATGCAATTCTGATGTTTCAGAAGGT 1164
Query 1259 TTTGTGTTCGGTAAAGATGTAGCTCTTCCTGAGACGACTATTCTTGTTCCTAGGAGACCG 1318
|||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 1165 TTTGTGTTTGGTAAAGATGTAGCTCTTCCTGAGACAACTATTCTTGTTCCAAGGAGACCG 1224
Query 1319 CTTAGGGCTCTCGGAGGCAAACCTGTTTCACAAAGGCAAATACTTGCCTTCTTTGCAGGC 1378
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1225 CTTAGGGCTCTCGGAGGCAAACCTGTTTCACAAAGGCAAATACTTGCCTTCTTTGCTGGT 1284
Query 1379 GGAATGCACGGTTACCTTAGACCTCTCCTATTGCAAAACTGGGGAGGAAACAGAGATCCA 1438
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 1285 GGAATGCACGGTTACCTTAGACCTCTCCTATTACAAAACTGGGGAGGTAACAGAGATCCA 1344
Query 1439 GACATGAAAATATTCAGTGAGATACCCAAATCTAAAGGGAAAAAGAGTTACATGGAGTAC 1498
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1345 GACATGAAAATATTCAGTGAGATACCCAAATCTAAAGGAAAAAAGAGTTACATGGAGTAC 1404
Query 1499 ATGAAGAGCAGCAAGTATTGCATCTGCCCAAAAGGGCACGAAGTCAATAGCCCTCGGGTC 1558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1405 ATGAAGAGCAGCAAGTATTGCATCTGCCCAAAAGGGCACGAAGTCAATAGCCCTCGGGTC 1464
Query 1559 GTGGAGGCATTGTTCTATGAGTGTGTCCCGGTTATCATATCCGATAACTTTGTACCTCCC 1618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1465 GTGGAGGCATTGTTCTATGAGTGTGTCCCGGTTATCATATCCGATAACTTTGTACCTCCC 1524
Query 1619 TTCTTCGAAGTTCTGAATTGGGAGTCTTTTGCGGTATTTGTCTTGGAGAAAGATATTCCT 1678
|||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 1525 TTCTTCGAAGTTCTGAATTGGGAGGCTTTTGCGGTATTTGTCTTGGAAAAAGATATTCCT 1584
Query 1679 GATTTGAAGAACATATTAGTGTCCATAACTGAGGAAAGGTATAGAGAGATGCAGATGAGA 1738
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1585 GACTTGAAGAACATATTAGTGTCCATAACTGAGGAAAGGTATAGAGAGATGCAGATGAGA 1644
Query 1739 GTCAAGATGGTGCAGAAGCATTTCCTTTGGCATTCTAAACCTGAGAGATTCGATATATTT 1798
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1645 GTCAAGATGGTGCAGAAGCATTTCCTTTGGCATTCTAAACCCGAGAGATTCGATATATTT 1704
Query 1799 CATATGATACTTCACTCCATTTGGTACAATAGAGTTTTTCAAATTTAAAACCACAGAGTA 1858
||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct 1705 CATATGATACTTCACTCTATTTGGTACAATAGAGTTTTTCAAAGCTAAAACCACAGAGTA 1764
Query 1859 GGTTTGTGACTGTAGAACAAGTAACTAACAGAGATTCATTCGTTAATATAGCAAAA 1914
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1765 GGTTTGTGACTGTAGAACAAGTAACTAACAGAGATTCATGCGTTAATATAGCAAAA 1820
> Ahg493201 jgi|Araly1|493201|fgenesh2_kg.7__2634__AT4G16745.1
Length=1873
Score = 67.6 bits (36), Expect = 3e-10
Identities = 84/105 (80%), Gaps = 12/105 (11%)
Strand=Plus/Plus
Query 1725 AGATGCAGATG-AGA-GTCAAGATGGTGCAGAAG-CATTTCCTT-TGGCA-TTCTAAACC 1779
||||||||| | | | || |||||||| ||| || ||||| ||| ||| | | |||||
Sbjct 1688 AGATGCAGA-GTA-ACGTGAAGATGGTTCAG-AGACATTT-CTTGTGG-AGCCCCAAACC 1742
Query 1780 TGAGAGA-TTCGATATATTTCATATGATACTTCACTCCATTTGGT 1823
| ||| | | |||| | ||||||||||||||||||||||||||||
Sbjct 1743 T-AGAAAGTACGATGTGTTTCATATGATACTTCACTCCATTTGGT 1786
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72333375255
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5