BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G32810.1
Length=2019
Score E
Sequences producing significant alignments: (Bits) Value
Ahg353547 jgi|Araly1|353547|fgenesh1_pg.C_scaffold_7000720 2695 0.0
> Ahg353547 jgi|Araly1|353547|fgenesh1_pg.C_scaffold_7000720
Length=1713
Score = 2695 bits (1459), Expect = 0.0
Identities = 1630/1714 (95%), Gaps = 6/1714 (0%)
Strand=Plus/Plus
Query 121 ATGGCTTCTTTGATCACAACCAAAGCAATGATGAGTCATCATCATGTTTTGTCGTCAACT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCTTCTTTGATCACAACCAAAGCAATGATGAGTCATCATCATGTTTTGTCGTCAACT 60
Query 181 AGAATCACTACTCTTTATTCCGACAATTCCATCGGCGATCAACAAATAAAAACAAAACCT 240
|||||||||| || |||||||||||||||||||||| | |||||| ||||||||||| |
Sbjct 61 AGAATCACTATTCATTATTCCGACAATTCCATCGGCCAGCAACAATTAAAAACAAAA-TT 119
Query 241 -CAAGTCCCTCACCGGTTATTTGCTCGGAGGATCTTCGGTGTAACCAGAGCTGTAATTAA 299
|||||||||||||| |||||||| |||||| ||||||||||||||||||||||||| ||
Sbjct 120 CCAAGTCCCTCACCGATTATTTGCACGGAGGGTCTTCGGTGTAACCAGAGCTGTAATCAA 179
Query 300 TTCAGCGGCACCGTCTCCGTTGCCGGAGAAAGAGAAGGTGGAAGGTGAGAGACGGTGTCA 359
|||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 TTCACCCGCACCGTCTCCGTTGCCGGAGAAAGAGAAGGTGGAAGGTGAGAGACGGTGTCA 239
Query 360 TGTTGCGTGGACAAGTGTACAACAAGAGAATTGGGAGGGTGAACTTACTGTCCAAGGAAA 419
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 240 TGTTGCGTGGACAAGTGTACAACAAGAGAAGTGGGAGGGTGAGCTTACTGTCCAAGGAAA 299
Query 420 GATACCCACTTGGCTGAATGGTACGTACCTAAGAAACGGTCCTGGTCTATGGAACATTGG 479
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 300 GATACCCACTTGGCTGAATGGTACGTACCTAAGAAACGGTCCCGGTCTGTGGAACATTGG 359
Query 480 AGACCACGATTTCCGGCATCTCTTCGACGGCTACTCCACACTCGTCAAGCTTCAATTCGA 539
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 AGACCACGATTTCCGTCATCTCTTCGACGGCTACTCCACACTCGTCAAGCTTCAATTCGA 419
Query 540 TGGCGGTCGTATATTCGCCGCCCACCGTCTCCTTGAATCCGACGCTTACAAAGCCGCCAA 599
||||||||||||||||||| |||||||||||||||||||||||| |||||||| |||||
Sbjct 420 CGGCGGTCGTATATTCGCCGGCCACCGTCTCCTTGAATCCGACGCCTACAAAGCAGCCAA 479
Query 600 GAAACACAATAGGCTTTGTTACCGTGAATTCTCCGAGACTCCAAAATCGGTGATCATAAA 659
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 480 GAAACACAATCGGCTTTGTTACCGTGAATTCTCCGAGACTCCAAAACCGGTGATCATAAA 539
Query 660 CAAAAACCCTTTCTCCGGGATCGGAGAAATCGTCAGGCTTTTCTCCGGAGAGTCTTTAAC 719
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 540 CAAAAACCCTTTCTCCGGGATCGGAGAAATCGTCAGACTTTTCTCCGGTGAGTCTTTAAC 599
Query 720 GGACAACGCCAACACCGGAGTGATCAAACTCGGTGACGGGCGGGTCATGTGTCTGACGGA 779
|||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 600 CGACAACGCAAACACTGGAGTGATCAAACTCGGTGACGGGCGGGTCATGTGTCTCACGGA 659
Query 780 GACTCAAAAAGGATCGATTTTAGTCGACCATGAGACGCTAGAGACGATCGGGAAATTTGA 839
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 660 GACTCAAAAAGGATCGATTTTAGTCGACCATGAGACGCTCGAGACGATCGGGAAATTCGA 719
Query 840 GTACGACGACGTATTGTCCGATCATATGATCCAATCAGCGCATCCGATAGTGACGGAGAC 899
|||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 720 ATACGACGACGGATTGTCCGATCATATGATCCAGTCAGCGCATCCGATAGTGACGGAGAC 779
Query 900 GGAGATGTGGACGTTGATACCGGATTTGGTTAAACCGGGTTATCGGGTCGTGAGGATGGA 959
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 780 GGAGATGTGGACGTTGATACCGGATTTGGTTAAACCGGGTTATCGGGTCGTGAGAATGGA 839
Query 960 AGCCGGGTCGAATAAAAGAGAGGTTGTGGGGCGGGTGAGGTGTCGAAGTGGGTCGTGGGG 1019
|||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||
Sbjct 840 GGCCGGGTCGAATAAAAGAGAGGTTGTGGGGCGGGTGAGATGTCGGAGCGGGTCGTGGGG 899
Query 1020 ACCCGGTTGGGTCCATTCGTTTGCGGTGACGGAGAATTATGTTGTAATACCGGAAATGCC 1079
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 900 ACCCGGTTGGGTCCATTCGTTTGCCGTGACGGAGAATTATGTTGTGATACCGGAAATGCC 959
Query 1080 CCTGAGATATTCGGTGAAGAATCTTCTTAGAGCTGAGCCGACGCCACTTTACAAGTTCGA 1139
|||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 CCTGAGGTATTCGGTGAGGAATCTTCTTAGAGCTGAGCCGACGCCACTTTACAAGTTCGA 1019
Query 1140 GTGGTGTCCCCAAGACGGAGCTTTTATTCATGTCATGTCCAAACTCACCGGAGAAGTCGT 1199
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1020 GTGGTGTCCCGAAGACGGAGCTTTTCTTCATGTCATGTCCAAACTCACCGGAGAAGTCGT 1079
Query 1200 GGCTAGCGTGGAGGTTCCAGCATACGTAACGTTTCACTTCATAAACGCGTATGAAGAAGA 1259
||| ||||||||||| ||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct 1080 GGCGAGCGTGGAGGTACCAGCATTCGTAACGTTTCACTTCATAAACGCGTACGAAGAAGA 1139
Query 1260 TAAAAATGGCGATGGAAAAGCGACGGTCATCATTGCAGATTGTTGTGAACACAACGCCGA 1319
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1140 TGAAAATGGCGATGGAAAAGCGACGGTCATCATTGCAGATTGTTGTGAACACAACGCGGA 1199
Query 1320 TACTCGGATACTCGATATGCTCCGTCT-CGATACCCTACGTTCTTCCCATGGTCACGACG 1378
||||||||||||||||||||||||||| | ||||||||||||| ||||||||||| ||||
Sbjct 1200 TACTCGGATACTCGATATGCTCCGTCTAC-ATACCCTACGTTCCTCCCATGGTCATGACG 1258
Query 1379 TTTTACCCGATGCTAGGATCGGGAGATTCAGGATACCATTGGACGGGAGCAAATACGGGA 1438
||||||| ||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 1259 TTTTACCGGATGCTAGGATCGGGAGATTCAGGATACCGTTAGACGGGAGCAAATACGGGA 1318
Query 1439 AACTAGAGACAGCCGTGGAGGCAGAGAAGCATGGGAGAGCGATGGATATGTGCAGCATCA 1498
| || || || |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1319 AGCTGGAAACGGCCGTGGAGGCAGAGAAGCATGGGAGGGCGATGGATATGTGCAGCATCA 1378
Query 1499 ATCCTTTGTATTTGGGTCAAAAATACCGTTACGTTTATGCATGCGGTGCTCAACGACCTT 1558
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1379 ATCCTTTGTATTTGGGTCAAAAATACCGTTACGTTTATGCATGCGGTGCTAAACGACCTT 1438
Query 1559 GTAACTTCCCCAATGCTCTCTCCAAGGTTGATATTGTGGAGAAGAAAGTGAAGAACTGGC 1618
| |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 1439 GCAACTTCCCCAATGCTCTCTCCAAGGTTGATATTGTGGAGAAGAAGGTAAAGAACTGGC 1498
Query 1619 ACGAGCATGGTATGATACCATCTGAACCATTCTTCGTGCCTCGACCCGG-TGCAACCCAT 1677
|||| || ||||| |||||||| ||||||||||| ||||||||||| || |||||| |||
Sbjct 1499 ACGAACACGGTATCATACCATCCGAACCATTCTTTGTGCCTCGACC-GGATGCAACACAT 1557
Query 1678 GAGGATGATGGAGTGGTGATATCGATAGTAAGTGAAGAAAATGGAGGAAGCTTTGCAATC 1737
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1558 GAGGATGATGGAGTGGTGATATCGATAGTAAGTGAAGAAAATGGAGGAAGCTTTGCAATC 1617
Query 1738 TTGCTTGATGGGAGCTCCTTTGAAGAAATAGCAAGAGCCAAGTTTCCCTATGGCCTTCCT 1797
|| |||||||||||| ||||||||||||||||||||||||| ||||| ||||| ||||||
Sbjct 1618 TTACTTGATGGGAGCACCTTTGAAGAAATAGCAAGAGCCAACTTTCCTTATGGTCTTCCT 1677
Query 1798 TATGGCTTGCATGGTTGCTGGATCCCCAAAGATT 1831
||||| |||||||||||||||||||||||| |||
Sbjct 1678 TATGGTTTGCATGGTTGCTGGATCCCCAAACATT 1711
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75913858285
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5