BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G32830.1
Length=1171
Score E
Sequences producing significant alignments: (Bits) Value
Ahg944667 jgi|Araly1|944667|scaffold_700896.1 1465 0.0
Ahg481442 jgi|Araly1|481442|fgenesh2_kg.4__502__AT2G25880.1 850 0.0
Ahg320379 jgi|Araly1|320379|fgenesh1_pm.C_scaffold_4000436 833 0.0
> Ahg944667 jgi|Araly1|944667|scaffold_700896.1
Length=914
Score = 1465 bits (793), Expect = 0.0
Identities = 879/919 (96%), Gaps = 12/919 (1%)
Strand=Plus/Plus
Query 92 gatctcttcttcCATGGCGATCCCTACGGAGACACAACACCAGGAGAAGGAGGCTTCAGA 151
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 8 GATCTCTTCTTCCATGGCGATCCCTACGGAGACACAACAACAGGAGAAGGAGGCTTCAGA 67
Query 152 TGCTTCTGCAGCAGCTGCACAAAAGAGATGGACTTTAAGCGATTTCGACATCGGTAAGCC 211
| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 68 ------T------GCTGCACAAAAGAGATGGACTTTAAGCGATTTCGACATCGGTAAGCC 115
Query 212 TCTTGGCAGAGGCAAATTCGGTCACGTCTATCTCGCCAGAGAAAAACGGAGCAATCACGT 271
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 116 TCTTGGCAGAGGAAAATTCGGTCACGTCTATCTCGCCAGAGAAAAACGGAGCAATCACAT 175
Query 272 TGTCGCTCTAAAGGTTCTTTTCAAGAGCCAGCTTCAACAATCCCAAGTTGAACATCAGCT 331
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 176 TGTCGCTCTAAAGGTTCTTTTCAAGAGCCAGCTTCAACAATCCCAAGTTGAACATCAGCT 235
Query 332 CAGAAGAGAAGTTGAGATTCAGTCTCATCTTCGTCACCCCAACATACTCCGGCTTTATGG 391
| |||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 236 CCGAAGAGAAGTTGAGATCCAGTCTCATCTTCGACACCCCAACATACTCCGGCTTTATGG 295
Query 392 CTATTTCTATGATCAAAAAAGAGTTTATTTGATACTTGAGTATGCTGCTAGAGGCGAACT 451
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 296 CTATTTCTATGATCAAAAAAGAGTTTATTTGATACTTGAGTATGCTGCTAGAGGCGAACT 355
Query 452 TTACAAGGATCTTCAGAAATGCAAATACTTCAGCGAAAGACGAGCTGCTACTTATGTTGC 511
||||||||| |||||||||||||||||||||||||| ||||||||||| || ||||||||
Sbjct 356 TTACAAGGAACTTCAGAAATGCAAATACTTCAGCGAGAGACGAGCTGCAACATATGTTGC 415
Query 512 CTCATTGGCGAGGGCTCTCATCTATTGCCATGGCAAGCATGTGATACACAGAGATATTAA 571
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 416 GTCATTGGCGAGGGCTCTCATATATTGCCATGGCAAGCATGTGATACACAGAGATATTAA 475
Query 572 ACCAGAGAATCTGCTAATTGGTGCTCAGGGTGAGCTCAAGATTGCAGACTTTGGTTGGTC 631
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 476 ACCAGAGAATCTGTTAATTGGTGCTCAGGGTGAGCTCAAGATTGCAGACTTTGGTTGGTC 535
Query 632 GGTACACACATTTAACCGAAGAAGGACCATGTGTGGCACACTAGATTACCTTCCTCCTGA 691
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 536 GGTACACACATTTAACCGCAGAAGGACGATGTGTGGCACACTAGATTACCTTCCTCCTGA 595
Query 692 GATGGTCGAAAGCGTAGAACATGATGCTAGTGTAGATATCTGGAGCCTTGGGATTCTCTG 751
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 596 AATGGTCGAAAGCGTAGAACATGATGCTAGTGTAGATATCTGGAGCCTTGGGATTCTCTG 655
Query 752 TTACGAGTTTCTTTATGGTGTACCTCCTTTTGAAGCCATGGAGCACTCAGACACATACAG 811
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 656 TTACGAGTTTCTTTATGGTGTACCTCCTTTTGAAGCCATGGAGCACTCAGACACATACAG 715
Query 812 AAGGATTGTGCAAGTGGATCTCAAGTTCCCTCCCAAACCAATAATCTCTGCATCTGCAAA 871
||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 716 AAGGATTGTGCAAGTGGATCTTAAGTTCCCTCCCAAACCAATTGTCTCTGCATCTGCAAA 775
Query 872 GGATCTTATTAGCCAGATGCTTGTCAAGGAGTCTTCGCAACGTCTGCCATTGCACAAGCT 931
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 776 GGATCTCATTAGCCAGATGCTTGTCAAGGAGTCTTCCCAACGTCTGCCATTGCACAAGCT 835
Query 932 TCTGGAGCATCCGTGGATCGTGCAAAACGCTGATCCTTCTGGAATCTACAGAGTTTAAAA 991
|||||||||||||||||| |||||||||||||||||||| ||||| ||||||| ||||||
Sbjct 836 TCTGGAGCATCCGTGGATTGTGCAAAACGCTGATCCTTCCGGAATATACAGAGGTTAAAA 895
Query 992 ACAAAACGCTTACTGTTCT 1010
||||||| ||| | |||||
Sbjct 896 ACAAAACACTTTCAGTTCT 914
> Ahg481442 jgi|Araly1|481442|fgenesh2_kg.4__502__AT2G25880.1
Length=970
Score = 850 bits (460), Expect = 0.0
Identities = 707/827 (85%), Gaps = 14/827 (2%)
Strand=Plus/Plus
Query 165 GCTGCACAAAAGAGATGGACT-TTAAGCGATTTCGACATCGGTAAGCCTCTTGGCAGAGG 223
||||||||||||||||||||| | |||||||||||| | || ||||||||||| |||||
Sbjct 70 GCTGCACAAAAGAGATGGACTACT-AGCGATTTCGACGTTGGAAAGCCTCTTGGTAGAGG 128
Query 224 CAAATTCGGTCACGTCTATCTCGCCAGAGAAAAACGGAGCAATCACGTTGTCGCTCTAAA 283
|| || || || || ||||| || ||||| ||||||||||||||| |||| ||||| ||
Sbjct 129 GAAGTTTGGCCATGTTTATCTAGCAAGAGAGAAACGGAGCAATCACATTGTGGCTCTTAA 188
Query 284 GGTTCTTTTCAAGAGC-CAGCTTCAACAATCCCAAGTTGAACATCAGCTCA-GAAGAGAA 341
||||||||| |||| | |||||||||||||| |||||||| || || | | |||| |||
Sbjct 189 GGTTCTTTTTAAGA-CTCAGCTTCAACAATCTCAAGTTGAGCACCA-ATTACGAAGGGAA 246
Query 342 GTTGAGATTCAGTCTCATCTTCGTCACCCCAACATACTCCGGCTTTATGGCTATTTCTAT 401
|| |||||||||||||||||||| || ||||| || || || || || || || ||||||
Sbjct 247 GTAGAGATTCAGTCTCATCTTCGGCATCCCAATATTCTGCGACTCTACGGTTACTTCTAT 306
Query 402 GATCAAAAAAGAGTTTATTTGATACTT-GAGTATGCTGCTAGAGGCGAACTTTACAAGGA 460
||||| ||||||||||||||||| || |||||||| |||||||| || ||||| || ||
Sbjct 307 GATCAGAAAAGAGTTTATTTGAT-TTTAGAGTATGCAGCTAGAGGTGAGCTTTATAAAGA 365
Query 461 TCTTCAGAAATGCAAATACTTCAGCGAAAGACGAGCTGCTACTTATGTTGCCTCATTGGC 520
|||||||| ||||| |||||||||||| | ||||| || ||||||||||| ||||||||
Sbjct 366 GCTTCAGAAGTGCAAGTACTTCAGCGAACGTCGAGCAGCAACTTATGTTGCGTCATTGGC 425
Query 521 GAGGGCTCTCATCTATTGCCATGGCAAGCATGTGATACACAGAGATATTAAA-CCAGAGA 579
|| || ||||||||||||||||| ||||| || || |||||||||| |||| || || |
Sbjct 426 AAGAGCCCTCATCTATTGCCATGGAAAGCACGTTATTCACAGAGATA-TAAAGCCTGAAA 484
Query 580 ATCTGCTAATTGGTGCTCAGGGTGAGCTCAAGATTGCAGACTTTGGTTGGTCGGTACACA 639
|||| | |||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 485 ATCTATTGATTGGTGCTCAGGGTGAGCTCAAGATTGCAGACTTTGGATGGTCAGTACACA 544
Query 640 CATTTAACCGAAGAAGGACCATGTGTGGCACACTAGATTACCTTCCTCCTGAGATGGTCG 699
|||| ||||| |||||||| ||||||||||| | ||||||||||| |||||||||||||
Sbjct 545 CATTCAACCGCAGAAGGACTATGTGTGGCACTTTGGATTACCTTCCGCCTGAGATGGTCG 604
Query 700 AAAGCGTAGAACATGATGCTAGTGTAGATATCTGGAGCCTTGGGATTCTCTGTTACGAGT 759
||||||||||||||||||| ||||| ||||| ||||| || || |||||||| ||||| |
Sbjct 605 AAAGCGTAGAACATGATGCAAGTGTGGATATATGGAGTCTAGGAATTCTCTGCTACGAAT 664
Query 760 TTCTTTATGGTGTACCTCCTTTTGAAGCCATGGAGCACTCAGACACATACAGAAGGATTG 819
||||||||||||| ||||||||||| |||| |||||| ||||| ||||||| ||||||||
Sbjct 665 TTCTTTATGGTGTCCCTCCTTTTGAGGCCAGGGAGCATTCAGAGACATACAAAAGGATTG 724
Query 820 TGCAAGTGGATCTCAAGTTCCCTCCCAAACCAATAATCTCTGCATCTGCAAAGGATCTT- 878
| ||||||||||||||||||||||| ||||| || | ||| ||| ||||||||| |||
Sbjct 725 TCCAAGTGGATCTCAAGTTCCCTCCAAAACCTATTGTGTCTTCATATGCAAAGGA-CTTG 783
Query 879 ATTAGCCAGATGCTTGTCAAGGAGTCTTCGCAACGTCTG-CCATTGCACAAGCTTCTGGA 937
|||||||||||||| || ||||||||| | |||||| || || |||||||||||||| ||
Sbjct 784 ATTAGCCAGATGCTGGTTAAGGAGTCTACACAACGTTTGGCC-TTGCACAAGCTTCTTGA 842
Query 938 GCATCCGTGGATCGTGCAAAACGCTGATCCTTCTGGAATCTACAGAG 984
|| |||||||| ||||||||||| ||||| || || ||||||||||
Sbjct 843 ACACCCGTGGATTGTGCAAAACGCAGATCCGTCGGGCATCTACAGAG 889
> Ahg320379 jgi|Araly1|320379|fgenesh1_pm.C_scaffold_4000436
Length=867
Score = 833 bits (451), Expect = 0.0
Identities = 702/825 (85%), Gaps = 10/825 (1%)
Strand=Plus/Plus
Query 165 GCTGCACAAAAGAGATGGACTTTAAGCGATTTCGACATCGGTAAGCCTCTTGGCAGAGGC 224
||||||||||||||||||||| ||||||||||||||| || ||||||||||| |||||
Sbjct 43 GCTGCACAAAAGAGATGGACTACAAGCGATTTCGACATTGGAAAGCCTCTTGGTAGAGGG 102
Query 225 AAATTCGGTCACGTCTATCTCGCCAGAGAAAAACGGAGCAATCACGTTGTCGCTCTAAAG 284
|| || || || || ||||| || ||||| ||||||||||||||| |||| ||||| |||
Sbjct 103 AAGTTTGGCCATGTTTATCTAGCAAGAGAGAAACGGAGCAATCACATTGTGGCTCTTAAG 162
Query 285 GTTCTTTTCAAGAGC-CAGCTTCAACAATCCCAAGTTGAACATCAGC-TCAGAAGAGAAG 342
|||||||| |||| | |||||||||||||| ||||||||||| |||| || | | ||||
Sbjct 163 GTTCTTTTTAAGA-CTCAGCTTCAACAATCTCAAGTTGAACACCAGCTTC-GGCGGGAAG 220
Query 343 TTGAGATTCAGTCTCATCTTCGTCACCCCAACATACTCCGGCTTTATGGCTA-TTTCTAT 401
| || ||||| ||||||||||| || ||||| || || || || || || || ||| |||
Sbjct 221 TAGAAATTCAATCTCATCTTCGGCATCCCAATATTCTGCGACTCTACGGTTACTTT-TAT 279
Query 402 GATCAAAAAAGAGTTTATTTGATACTT-GAGTATGCTGCTAGAGGCGAACTTTACAAGGA 460
||||| ||||||||||||||||| || |||||||| |||||||| || ||||| || ||
Sbjct 280 GATCAGAAAAGAGTTTATTTGAT-TTTAGAGTATGCAGCTAGAGGTGAGCTTTATAAAGA 338
Query 461 TCTTCAGAAATGCAAATACTTCAGCGAAAGACGAGCTGCTACTTATGTTGCCTCATTGGC 520
|||||||| ||||| |||||||||||| | ||||| || ||||||||||| ||||||||
Sbjct 339 GCTTCAGAAGTGCAAGTACTTCAGCGAACGTCGAGCAGCAACTTATGTTGCGTCATTGGC 398
Query 521 GAGGGCTCTCATCTATTGCCATGGCAAGCATGTGATACACAGAGATATTAAA-CCAGAGA 579
|| || ||||||||||||||||| |||||||| || |||||||||| |||| || || |
Sbjct 399 AAGAGCCCTCATCTATTGCCATGGAAAGCATGTAATTCACAGAGATA-TAAAGCCTGAAA 457
Query 580 ATCTGCTAATTGGTGCTCAGGGTGAGCTCAAGATTGCAGACTTTGGTTGGTCGGTACACA 639
|||| | |||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 458 ATCTATTGATTGGTGCTCAGGGTGAGCTCAAGATTGCAGACTTTGGATGGTCAGTACACA 517
Query 640 CATTTAACCGAAGAAGGACCATGTGTGGCACACTAGATTACCTTCCTCCTGAGATGGTCG 699
|||| ||||| |||||||| ||||||||||| | ||||||||||| ||||||||||| |
Sbjct 518 CATTCAACCGCAGAAGGACTATGTGTGGCACTTTGGATTACCTTCCGCCTGAGATGGTGG 577
Query 700 AAAGCGTAGAACATGATGCTAGTGTAGATATCTGGAGCCTTGGGATTCTCTGTTACGAGT 759
||||||||||||| ||||| ||||| ||||| ||||| || || |||||||| ||||| |
Sbjct 578 AAAGCGTAGAACACGATGCAAGTGTCGATATATGGAGTCTAGGAATTCTCTGCTACGAAT 637
Query 760 TTCTTTATGGTGTACCTCCTTTTGAAGCCATGGAGCACTCAGACACATACAGAAGGATTG 819
||||||||||||| ||||||||||| |||| ||| || ||||| ||||||| ||||||||
Sbjct 638 TTCTTTATGGTGTCCCTCCTTTTGAGGCCAGGGAACATTCAGAGACATACAAAAGGATTG 697
Query 820 TGCAAGTGGATCTCAAGTTCCCTCCCAAACCAATAATCTCTGCATCTGCAAAGGATCTTA 879
| ||||||||||||||||||||||||||||| || ||||| ||| ||||||||| || |
Sbjct 698 TTCAAGTGGATCTCAAGTTCCCTCCCAAACCCATTGTCTCTTCATATGCAAAGGACCTGA 757
Query 880 TTAGCCAGATGCTTGTCAAGGAGTCTTCGCAACGTCTGCCATTGCACAAGCTTCTGGAGC 939
||||||||||||| || ||||||||| | | |||| |||| |||||||||||||| || |
Sbjct 758 TTAGCCAGATGCTGGTTAAGGAGTCTACACGACGTTTGCCCTTGCACAAGCTTCTTGAAC 817
Query 940 ATCCGTGGATCGTGCAAAACGCTGATCCTTCTGGAATCTACAGAG 984
| || ||||| ||||||||||| || || || || |||||||||
Sbjct 818 ACCCATGGATTGTGCAAAACGCAGACCCATCAGGCCTCTACAGAG 862
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43688862882
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5