BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G32840.1
Length=1755
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491421 jgi|Araly1|491421|fgenesh2_kg.7__854__AT4G32840.1 2459 0.0
> Ahg491421 jgi|Araly1|491421|fgenesh2_kg.7__854__AT4G32840.1
Length=1553
Score = 2459 bits (1331), Expect = 0.0
Identities = 1466/1527 (96%), Gaps = 26/1527 (2%)
Strand=Plus/Plus
Query 17 TTACTTCTATACCACTCTGAGCTCTGAGAATTAAAACTCACATACATACATACGCTTCAA 76
|||||||||||||||||||||||||||| ||| | | | | | |||||||||||
Sbjct 1 TTACTTCTATACCACTCTGAGCTCTGAG-ATT-----T---A-A-A-A-ATACGCTTCAA 47
Query 77 ATTCACAGTCGCTTTACGTCACCGGAGAGAAAAACACTCAGAAGAATAAGGTTTTCTTCG 136
||||||| |||||||||||||||||||| ||||||| ||||||||||||| ||||||
Sbjct 48 ATTCACATTCGCTTTACGTCACCGGAGA-AAAAACA--CAGAAGAATAAGG---TCTTCG 101
Query 137 ATGGCTTCTAATGGCGTGGACGA-GCAGATTAAGTTGGTGGAAGGACCTGCTGGTTATGT 195
||||||||||||||||| ||| | |||| |||||||||||||||||||||||||||||
Sbjct 102 ATGGCTTCTAATGGCGT---CGATG-AGATAAAGTTGGTGGAAGGACCTGCTGGTTATGT 157
Query 196 ACTCGAAGATGTTCCTCATTTGAGCGATTACATTCTCGATCTCCCCACTTATCCAAACCC 255
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 158 ACTCGAAGATGTTCCTCATTTGAGCGATTACATTCTCGATCTCCCCACTTATCCTAACCC 217
Query 256 GTTGCAATCAAATGCTGCTTATTCAGTAGTAAGGCAGTATTTTGTTGATGAGGATGATAC 315
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 218 GTTGCAATCGAATGCTGCTTATTCAGTAGTTAGGCAGTATTTTGTTGATGAGGATGATAC 277
Query 316 AGTCCAGGAAAAGATTGTTGTTCACAAGGATTCTCCTAGAGGGACACATTTTAGACGTGC 375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 278 AGTCCAGGAAAAGATTGTTGTTCACAAGGATTCTCCTAGAGGGACACATTTTAGACGTGC 337
Query 376 AGGCCCGCGCCAAAAGGTGTACTTCAAGCCATCTGATGTGCGTGCCTGTATTGTCACTTG 435
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 338 AGGACCGCGCCAAAAGGTGTACTTCAAGCCATCTGATGTGCGTGCCTGTATTGTCACTTG 397
Query 436 TGGTGGCCTATGCCCCGGGCTTAATACAGTTATCAGGGAGATCGTGTGTGGTCTTCATTT 495
||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 398 TGGAGGCCTATGCCCCGGGCTTAATACAGTAATCAGGGAGATCGTATGTGGTCTTCATTT 457
Query 496 TATGTATGGTGTTACAGAAGTGATTGGTGTGGATTGCGGGTTTCGCGGGTTCTATTCTAA 555
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 458 TATGTATGGTGTTACAGAAGTGATTGGTGTGGATTGCGGGTTTCGCGGGTTCTATTCCAA 517
Query 556 AAACACTGTTGCACTAACGCCGAAGACTGTGAGTGACATCCACAAGCGCGGGGGAACCAT 615
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 518 AAACACTGTTGCACTAACGCCGAAGACTGTGAGTGACATCCACAAGCGCGGGGGAACCAT 577
Query 616 ACTAGGAACCTCCCGAGGGGGACATGATACATCAAAGATTGTCGACAACATACAAGATCG 675
||||||||||||||| ||||| ||||||||||| |||||||| |||||||||||||||||
Sbjct 578 ACTAGGAACCTCCCGCGGGGGGCATGATACATCGAAGATTGTTGACAACATACAAGATCG 637
Query 676 TGAAATAAATCAGGTTTACATTATTGGAGGTGATGGAACCCAAAAGGGAGCAAATGCAAT 735
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 638 CGAAATAAATCAGGTTTACATTATTGGAGGTGATGGAACCCAAAAGGGAGCAAGTGCAAT 697
Query 736 ATATAAGGAAATTAGGCGCCGTGGACTTAAAGTTGCAGTTGCAGGAATACCAAAAACCAT 795
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 698 ATACAAGGAAATTAGGCGCCGTGGACTTAATGTTGCAGTTGCAGGAATACCAAAAACCAT 757
Query 796 TGACAACGACATCCCAGTCATTGACAAGTCCTTTGGATTTGATACTGCGGTTGAGGAGGC 855
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 758 TGACAACGACATCCCAGTCATTGACAAGTCCTTTGGATTTGATACTGCGGTTGAGGAGGC 817
Query 856 TCAACGTGCTATTAATGCAGCGCATGTTGAAGCGACCAGTGTGGAAAACGGCATTGGAAT 915
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 818 TCAACGTGCTATTAATGCAGCGCATGTTGAAGCGACCAGTGTGGAAAACGGCATTGGACT 877
Query 916 TGTCAAGCTAATGGGTCGGTACAGTGGGTTCATTGCAATGTATGCTACTCTGGCTAGCCG 975
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 878 TGTCAAGCTAATGGGTCGCTACAGTGGGTTCATTGCAATGTATGCAACTCTGGCTAGCCG 937
Query 976 AGATGTTGACTGCTGTCTGATTCCCGAGTCACCCTTTTACCTTGAAGGCAAAGGAGGGCT 1035
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 938 AGACGTTGACTGCTGTCTGATTCCCGAGTCACCCTTTTACCTTGAAGGCAAAGGAGGGCT 997
Query 1036 CTATGAGTTCATTGCAAAACGTCTCAGAGAAAATGGCCACATGGTTATAGTGATTGCTGA 1095
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 998 CTATGAGTTCATTGCAAAACGGCTCAGAGAAAATGGCCACATGGTTATAGTGATTGCTGA 1057
Query 1096 AGGAGCAGGACAGGATCTTGTTGCAGAGAGCATTGAACAACAAGATGCTTCAGGAAACAA 1155
||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1058 AGGGGCAGGGCAGGATCTTGTTGCAGAGAGCATTGATCAACAAGATGCTTCAGGAAACAA 1117
Query 1156 GCTCCTTAAAGATGTAGGACTATGGATGAGTCTTAAAATCAAGGAATACTTTGCGAAGCA 1215
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1118 GCTCCTTAAAGATGTAGGACTATGGATGAGTCTTAAAATCAAGGAACACTTTGCGAAGCA 1177
Query 1216 CAATGTAATGGACATTACTCTTAAATACATTGATCCGACATACATGATCCGAGCTATTCC 1275
| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1178 GAGTGTAATGGACATTACTCTCAAATACATTGATCCGACATACATGATCCGAGCTATTCC 1237
Query 1276 AGCCAATGCATCTGACAACGTCTACTCAACTCTCCTTGCCCAAAGCGCAGTCCATGGTGC 1335
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1238 AGCCAATGCATCTGACAACGTCTACTCAACTCTCCTTGCCCAAAGCGCAGTCCATGGTGC 1297
Query 1336 AATGGCTGGCTATACCGGCTTTGTCTCTGGTCTTGTTAATGGAAGGCACACCTACATTCC 1395
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1298 AATGGCTGGCTATACCGGCTTCGTCTCTGGTCTTGTTAATGGAAGGCACACCTACATTCC 1357
Query 1396 CTTTAACCGAATAACCGAAAGACAGAACAAAGTTGTGATTACAGATAGAATGTGGGCGCG 1455
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1358 CTTTAACCGAATAACGGAAAGACAGAACAAAGTTGTGATTACAGACAGAATGTGGGCGCG 1417
Query 1456 AATGTTGTCATCTACAAACCAGCCCAGCTTCATGAACCC-TCCTAAAGGAACCACGGAGT 1514
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1418 AATGTTGTCATCTACAAACCAGCCCAGCTTCATGAACCCCTCCTAAAGGAACCACGGAGT 1477
Query 1515 TTACCGACTAATAGCAAAAATT-TTTT 1540
|||| |||||||||| |||||| ||||
Sbjct 1478 TTACGGACTAATAGCCAAAATTGTTTT 1504
Score = 99.0 bits (53), Expect = 1e-19
Identities = 56/57 (98%), Gaps = 1/57 (2%)
Strand=Plus/Plus
Query 1562 TTGAttttttttGCATCACCATTAATGATATTCTGTCTTGTTATCTTCTTCGTCTCT 1618
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1498 TTG-TTTTTTTTGCATCACCATTAATGATATTCTGTCTTGTTATCTTCTTCGTCTCT 1553
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65858033605
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5