BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G32850.8
Length=2677
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491411 jgi|Araly1|491411|fgenesh2_kg.7__844__AT4G32850.6 3823 0.0
Ahg320377 jgi|Araly1|320377|fgenesh1_pm.C_scaffold_4000434 1853 0.0
> Ahg491411 jgi|Araly1|491411|fgenesh2_kg.7__844__AT4G32850.6
Length=3048
Score = 3823 bits (2070), Expect = 0.0
Identities = 2277/2372 (96%), Gaps = 33/2372 (1%)
Strand=Plus/Plus
Query 19 ctctctctctctccatctccctcatacctccttcttcttcttgatccatcatctctctct 78
||||||||||||||||||||||||| ||||||||||||||| ||| | |||||||||||
Sbjct 1 CTCTCTCTCTCTCCATCTCCCTCATGCCTCCTTCTTCTTCTCGAT-C--CATCTCTCTCT 57
Query 79 ctttctctcttctctctGTTCCTAGTCCATCGATTTAACCTCTTTCAGATTCTCCTTCTT 138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 58 CTTTCTCTCTTCTCTCTGTTCCTAGTCCATCGATTTAACCTCTTTCAGATTCTCCTTCTT 117
Query 139 CTTTGACtttt-tttGACACCGTAGTCTCTTTCCCCTTCCATCGATTTAGGGTTTCCGAT 197
||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 118 CTTTGACTTTTCTTTGACACCGTAGTCTCTCTCCCCTTCCATCGATTTAGGGTTTCCGAT 177
Query 198 TTTCAAAATCTCCTTT-TTATTTGTTTCCTCTCCTTGTGCAATTCCCGTCTCGAATCCAT 256
||||||||| |||||| || |||| ||||||||||| | ||| || | ||||||| |||
Sbjct 178 TTTCAAAATTTCCTTTCTTTTTTG-TTCCTCTCCTTCTACAA-TCTC--CTCGAATTCAT 233
Query 257 CTTGACC-TGG-GG-GTCTGATCCGATCTCCCTCTAATCATATCGTGAAGCGAGATTATG 313
||||||| || || |||||||||||||| | | | || | | || | ||||
Sbjct 234 CTTGACCAAGGAGGCGTCTGATCCGATCT--C-C----C---TC--G-A--GA-A-TATG 276
Query 314 TTTTTGTGCTGCGCTTCTGCTTTGATCGCTTAGGA-TTATCAATCGTGTTATGATGGTGG 372
|||||||||||| |||||||||||||||| ||||| || | |||||||||||||||||||
Sbjct 277 TTTTTGTGCTGCTCTTCTGCTTTGATCGCCTAGGATTTGT-AATCGTGTTATGATGGTGG 335
Query 373 GTACTCAAAATTTAGGTGGTTCGTTGCCGCCGCTGAATTCTCCTAAAAGCTATGGAATTA 432
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 336 GTACACAAAATTTAGGTGGTTCGTTGCCGCCGCTGAATTCCCCTAAAAGCTATGGAATTA 395
Query 433 CGAAGCCGCTCTCTCTTGCTGGGCCTTCTTCGGCGGATATTAAGCGTAATGTGGAGCTGG 492
||||||||||||| |||||||| || || ||||||||||||||||||||||| |||||||
Sbjct 396 CGAAGCCGCTCTCGCTTGCTGGCCCCTCCTCGGCGGATATTAAGCGTAATGTCGAGCTGG 455
Query 493 AGAAGTACTTGGTTGATGAGGGACTCTACGAGAGCAAGGATGATACCATGCGGCGAGAGG 552
|||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct 456 AGAAGTACTTGGTTGATGAGGGACTCTACGAGAGCAAGGACGATACCATGCGGAGAGAGG 515
Query 553 AAGTTCTAGGACGCATCGATCAGATTGTAAAGCACTGGGTGAAACAGTTAACGCAGCAAA 612
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 516 AAGTTCTGGGACGCATTGATCAGATTGTAAAGCACTGGGTGAAACAGTTAACGCAGCAAA 575
Query 613 GAGGATATACTGATCAGATGGTGGAAGATGCAAATGCTGTCATTTTCACCTTTGGATCCT 672
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 576 GAGGATATACAGATCAGATGGTGGAGGATGCAAATGCTGTCATTTTCACCTTTGGATCCT 635
Query 673 ACCGACTTGGCGTGCATGGTCCTGGGGCTGACATTGATACTTTGTGTGTTGGGCCATCTT 732
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 636 ACCGACTTGGCGTGCATGGTCCTGGGGCTGACATTGATACTTTGTGTGTTGGGCCATCTT 695
Query 733 ATGTTAACCGGGAGGAGGATTTCTTCATCATCTTGCATGATATATTGGCTGAGATGGAAG 792
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 696 ATGTTAACCGGGAGGAGGATTTCTTCATCATCTTGCATGATATATTGGCTGAGATGGAAG 755
Query 793 AAGTGACTGAGCTCCATCCTGTTCCCGATGCCCATGTTCCGGTCATGAAATTTAAGTTTC 852
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 756 AAGTGACTGAGCTCCATCCTGTTCCCGACGCCCATGTTCCGGTCATGAAATTTAAGTTTC 815
Query 853 AAGGAATACCGATTGATCTGCTCTATGCTAGCATATCACTTTTAGTTGTGCCACAGGATC 912
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 816 AAGGAATACCGATTGATCTGCTCTATGCTAGCATATCACTTTTAGTTGTGCCACAGGATC 875
Query 913 TGGATATCTCCAGCTCTTCTGTGCTGTGTGAAGTTGATGAGCCAACCGTTCGAAGTCTTA 972
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 876 TGGATATCTCCAGCTCTTCTGTGCTGTGTGATGTTGATGAGCCAACCGTTCGAAGTCTTA 935
Query 973 ATGGTTGTAGAGTTGCTGATCAGATTCTTAAACTCGTTCCAAATTTTGAGCACTTCCGGA 1032
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 936 ATGGTTGTAGAGTTGCTGATCAGATTCTGAAACTCGTTCCAAATTTTGAGCACTTCCGGA 995
Query 1033 CAACCTTAAGATGCCTGAAGTACTGGGCTAAGAAGCGTGGGGTGTATTCAAATGTGACTG 1092
|||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 996 CAACTTTAAGATGCCTGAAGTATTGGGCTAAGAAGCGTGGCGTGTATTCAAATGTGACTG 1055
Query 1093 GATTTCTTGGCGGTGTAAACTGGGCACTTTTGGTTGCTCGTGTCTGCCAGCTTTATCCAA 1152
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1056 GATTTCTTGGCGGTGTAAACTGGGCACTTTTGGTTGCTCGTGTCTGCCAGCTCTATCCAA 1115
Query 1153 ATGCAATTCCTAGTATGCTGGTTTCTCGtttttttAGAGTATATACTCAATGGCGGTGGC 1212
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 1116 ATGCAATTCCTAGTATGCTGGTTTCTCGTTTTTTCAGAGTGTATACTCAATGGCGGTGGC 1175
Query 1213 CGAACCCAGTCATGCTTTGTGCAATAGAAGAGGATGAGCTTGGATTTCCTGTCTGGGACC 1272
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1176 CGAACCCAGTCATGCTTTGTGCAATAGAAGAGGATGAGCTTGGATTTCCTGTCTGGGACC 1235
Query 1273 GTCGTAAGAATCATCGCGACCGCTATCACCTTATGCCAATAATAACTCCAGCTTACCCAT 1332
|||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1236 CTCGTAAAAATCATCGTGACCGCTATCACCTTATGCCAATAATAACTCCAGCTTACCCAT 1295
Query 1333 GCATGAATTCTAGTTACAATGTCTCTCAAAGCACTCTTCGCGTTATGACAGAGCAGTTCC 1392
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1296 GCATGAATTCTAGTTACAATGTCTCTCAAAGCACTCTTCGCGTTATGACAGAGCAGTTCC 1355
Query 1393 AGTTTGGTAACAATATCTTGCAGGAGATTGAATTAAATAAACAGCACTGGAGCTCTTTAT 1452
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1356 AGTTTGGTAACAATATCTTGCAGGAGATTGAATTAAATAAACAGCACTGGAGCTCTTTAT 1415
Query 1453 TTGAACAATATATGTTTTTCGAGGCATACAAAAACTACCTTCAGGTTGATATAGTGGCAG 1512
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1416 TTGAACAATATATGTTTTTCGAGGCATATAAAAACTACCTTCAGGTTGATATAGTGGCAG 1475
Query 1513 CAGATGCAGAAGATTTATTGGCTTGGAAGGGTTGGGTGGAGTCGCGGTTCAGACAGCTGA 1572
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1476 GAGATGCAGAAGATTTATTGGCTTGGAAGGGTTGGGTGGAGTCGCGGTTCAGACAGCTGA 1535
Query 1573 CCTTAAAGATAGAAAGAGACACTAATGGGATGTTAATGTGCCATCCCCAACCAAATGAGT 1632
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1536 CCTTAAAGATAGAAAGAGACACTAATGGGATGTTAATGTGCCATCCCCAACCAAATGAGT 1595
Query 1633 ATGTAGACACGGCTAGGCAGTTTCTGCATTGTGCCTTTTTCATGGGCTTGCAGAGGGCAG 1692
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1596 ATGTAGACACGGCTAGGCAGTTTCTGCATTGTGCCTTTTTCATGGGCTTGCAGAGGGCAG 1655
Query 1693 AGGGAGTTGGGGGTCAAGAATGTCAACAGTTTGATATACGTGGTACTGTCGATGAGTTCA 1752
|||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 1656 AGGGAGTTGGTGGTCAAGAATGTCAACAATTTGATATACGTGGTACGGTCGATGAGTTCA 1715
Query 1753 GACAAGAAGTAAACATGTATATGTTTTGGAAACCTGGGATGGATGTTTTCGTTTCTCATG 1812
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 1716 GACAAGAAGTAAACATGTATATGTTCTGGAAACCTGGGATGGATGTGTTCGTTTCTCATG 1775
Query 1813 TTCGTAGACGACAGCTTCCACCTTTTGTTTTCCCTAATGGATATCGAAGGCCTCGGCAGT 1872
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 1776 TTCGTAGACGACAGCTTCCTCCTTTTGTTTTCCCAAATGGATATCGAAGGCCTCGGCAGT 1835
Query 1873 CCAGGCACCAAAATCTACCGGGTGGAAAATCTGGTGAAGATGGCAGTGTTTCTCATTCCG 1932
||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 1836 CCAGGCACCAAAATCAACCGGGTGGAAAATCTGGTGAAGATGGCACTGTTTCTCATTCTG 1895
Query 1933 GCTCTGTGGTGGAGAGGCATGCCAAGCGAAAGAACGATAGTGAAATGATGGATGTGAGGC 1992
|||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct 1896 GCTCTGTGGTGGAGAGGCATGCCAAGAGAAAGAACGATAGTGAAATGATGGATGCGAGGC 1955
Query 1993 CAGAGAAACCTGAGAAGCGTGCATCTCTTAGTCCACAGAGTCTAGATATAGTTTCTCCTG 2052
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1956 CAGAGAAACCTGAGAAGCGTGCATCTCTTAGTCCACAGAGTCTAGATATAGTTTCTCCTG 2015
Query 2053 AAAATAGTGCTATCACAACTGGTTGGACTCCTCCTGTTTGCAACCTTAGAAGGCCACCAA 2112
||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2016 AAAGTAGTGCTATCACTACTGGTTGGACTCCTCCTGTTTGCAACCTTAGAAGGCCACCAA 2075
Query 2113 GCGAGGAAATAGAAGCTGATAATTTGAACACTGAGTGTACTGAACTCACAGACTTAGCTC 2172
||||||||||||||||||| ||||||||||| |||||||||||||||||| |||| ||||
Sbjct 2076 GCGAGGAAATAGAAGCTGAAAATTTGAACACCGAGTGTACTGAACTCACAAACTTTGCTC 2135
Query 2173 GAAATGAGTGTAACTCTGGCAGCGAGCAAGTTCTTGAAGTAGATAGTATGGCTGTAGTTC 2232
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2136 GAAATGAGTGTAACTCTGGCAGCGAGCAAGTTCTTGAAGTAGATAGTATGGCTCTAGTTC 2195
Query 2233 AAGAATGCTCTGATCCTGCTGAGCCTTTGGGAAAGTGTGTAACACCTGACTCT-GTTGAT 2291
|||||||||||||||| |||||||||||||||||||||||||||||||||||| || |||
Sbjct 2196 AAGAATGCTCTGATCCGGCTGAGCCTTTGGGAAAGTGTGTAACACCTGACTCTAGT-GAT 2254
Query 2292 GTGGTAGCATGTGTAAGTGGGCAGGAAGAAAACTTAGATCGTAATTTGAGGTCTGTATCC 2351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2255 GTGGTAGCATGTGTAAGTGGGCAGGAAGAAAACTTAGATCGTAATTTGAGGTCTGTATCC 2314
Query 2352 ATCAGTGGTACTGACTCCCCACTTCTTCCGAG 2383
||||||||||||||||||| || |||||||||
Sbjct 2315 ATCAGTGGTACTGACTCCCAACCTCTTCCGAG 2346
Score = 322 bits (174), Expect = 9e-87
Identities = 270/313 (86%), Gaps = 19/313 (6%)
Strand=Plus/Plus
Query 2382 AGCAGATCCTGTGGGCAGAACCGTGATTATGA-G---GGTTTCGGGTTTCCTGCTGCAAA 2437
|||||||| ||||||||||||||||||||||| | ||||| |||||||||||||||||
Sbjct 2374 AGCAGATCTTGTGGGCAGAACCGTGATTATGAGGTTAGGTTTTGGGTTTCCTGCTGCAAA 2433
Query 2438 TTCAGATCC-TATGGGAAAGAAAAACTTGTACTCTCAAAGCGGCATGTCGGAAGACCTTC 2496
||||||||| | |||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct 2434 TTCAGATCCGT-TGGGAAAGGAAAACTTGTACTCTCAAAGTGGCATGTCGGAAGACCTTC 2492
Query 2497 AGTCAAACTCTTTGGTGAGCGGGATGGAGAAGTCGGAAGACAGAGCTAGGTCA-GAATCT 2555
|||||||||||||||| |||||||||||||||||||||||||||||||| || | | |
Sbjct 2493 AGTCAAACTCTTTGGTCAGCGGGATGGAGAAGTCGGAAGACAGAGCTAGCACAAGCAGGT 2552
Query 2556 TTC-CAGAA-GTC-ACAGA-T-AAGG-CAT---G-CTATTGACGTGAAGAAAACGGGGGA 2605
| | || ||| || | | || | | | | |||||||||||||||||||| || |
Sbjct 2553 TAAGCTTAAAGTCCACTGTGTGAACGTCCTCTAGGCTATTGACGTGAAGAAAACGAGG-A 2611
Query 2606 TTTCAACTCAAATTGTTGCGTTGGACAGACGACAGAGTCCAGAAGCTTTT-GGTAAGTGA 2664
| ||||||||||||||| || |||||||||||||| |||||||||||||| |||||||||
Sbjct 2612 TATCAACTCAAATTGTTACGGTGGACAGACGACAGGGTCCAGAAGCTTTTTGGTAAGTGA 2671
Query 2665 ATTTTTAATATGG 2677
| |||||||||||
Sbjct 2672 ACTTTTAATATGG 2684
> Ahg320377 jgi|Araly1|320377|fgenesh1_pm.C_scaffold_4000434
Length=2367
Score = 1853 bits (1003), Expect = 0.0
Identities = 1465/1688 (87%), Gaps = 31/1688 (2%)
Strand=Plus/Plus
Query 412 CTCCTAAAAGCTATGGAATTACGAAGCCGCTCTCTCTTGCTGGGCCTTCTTCGGCGGATA 471
||| ||| | ||||||||| |||||||| || ||| ||||||| |||| | | || |||
Sbjct 59 CTCTTAAGACCTATGGAATCACGAAGCCACTTTCTATTGCTGGTCCTTGTGCCGCTGATG 118
Query 472 TTAAGCGTAATGTGGAGCTGGAGAAG-TACTTGGTTGATGAGGGACTCTACGAGAGCAAG 530
||||||||||| |||| || |||||| | | ||||||||||||| ||||| |||||||||
Sbjct 119 TTAAGCGTAATTTGGAACTAGAGAAGTTTC-TGGTTGATGAGGGGCTCTATGAGAGCAAG 177
Query 531 GATGATACCATGCGGCGAGAGGAAGTTCTAGG-ACGCATCGATCAGATTGTAAAGCACTG 589
|| || || |||||| ||||||||||||| || ||||| |||||||||||||| |||||
Sbjct 178 GAAGAAACTATGCGGAGAGAGGAAGTTCT-GGTGCGCATTGATCAGATTGTAAAACACTG 236
Query 590 GGTGAAACAGTTAACGCAG-CAAAGAGGATATACTGATCAGATGGTGGAAGATGCAAATG 648
||||||||||||||| | | || || || ||||| |||||||||||||| ||||||||||
Sbjct 237 GGTGAAACAGTTAACTC-GTCAGAGGGGCTATACAGATCAGATGGTGGACGATGCAAATG 295
Query 649 CTGTCATTTTCACCTTTGGATCCTACCGACTTGGCGTGCATGGTCCTGGGGCTGACATTG 708
| ||||||||||| |||||||| ||||| ||||| || || || ||| ||||||| ||||
Sbjct 296 CCGTCATTTTCACTTTTGGATCTTACCGCCTTGGAGTTCACGGACCTAGGGCTGATATTG 355
Query 709 ATACTTTGTGTGTTGGGCCATCTTATGTTAACCGGGAGGAGGATTTCTTCATCATCTTGC 768
|||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 356 ATACTTTGTGTGTTGGCCCATCTTATGTTAACCGAGAGGAGGATTTCTTCATTATCTTGC 415
Query 769 ATGATATATTGGCTGAGATGGAAGAAGTGACTGAGCTCCATCCTGTTCCCGATGCCCATG 828
|||||| |||||||| ||||||||||||||||| || || |||||| | ||||||||||
Sbjct 416 GTGATATGTTGGCTGAAATGGAAGAAGTGACTGAACTTCAACCTGTTACTGATGCCCATG 475
Query 829 TTCCGGTCATGAAATTTAAGTTTCAAGGAATACCGATTGATCTGCTCTATGCTAGCATAT 888
| || ||||||||||||||||| ||||||||| ||||||||| || |||||||||||||
Sbjct 476 TCCCAGTCATGAAATTTAAGTTCCAAGGAATATTGATTGATCTTCTGTATGCTAGCATAT 535
Query 889 CACTTTTAGTTGTGCCACAGGATCTGGATATCTCCAGCTCTTCTGTGCTGTGTGAAGTTG 948
| ||| ||||| | |||||||||||||||||||||| |||||||||||||||||| || |
Sbjct 536 CGCTTCTAGTTATCCCACAGGATCTGGATATCTCCAACTCTTCTGTGCTGTGTGACGTGG 595
Query 949 ATGAGCCAACCGTTCGAAGTCTTAATGGTTGTAGAGTTGCTGATCAGATTCTTAAACTCG 1008
|||| | ||| || || ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 596 ATGAACAAACTGTCCGCAGTCTTAATGGTTGTAGGGTTGCTGATCAGATTCTTAAACTCG 655
Query 1009 TTCCAAATTTTGAGCACTTCCGGACAACCTTAAGATGCCTGAAGTACTGGGCTAAGAAGC 1068
||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 656 TTCCAAATTCCGAGCACTTCCGGACAACATTAAGATGCCTGAAGTACTGGGCTAAGAAGC 715
Query 1069 GTGGGGTGTATTCAAATGTGACTGGATTTCTTGGCGGTGTAAACTGGGCACTTTTGGTTG 1128
||||||| ||||||||||| |||||||||||||| |||||||||||||||||| ||||||
Sbjct 716 GTGGGGTCTATTCAAATGTTACTGGATTTCTTGGTGGTGTAAACTGGGCACTTCTGGTTG 775
Query 1129 CTCGTG-TCTGCCAGCTTTATCCAAATGCAATTCCTAGTATGCTGGTTTCTCGttttttt 1187
| || | | |||||||||||||||||||| |||||||||||| |||||||||| ||||||
Sbjct 776 CACG-GCTGTGCCAGCTTTATCCAAATGCTATTCCTAGTATGTTGGTTTCTCGATTTTTT 834
Query 1188 AGAGTATATACT-CAATGGCGGTGGCCGAACCCAGTCATGCTTTGTGCAATAGAAGAGGA 1246
|| ||||||| | |||||||| ||||| || |||||||||||||||||||||||||| ||
Sbjct 835 AGGGTATATA-TACAATGGCGCTGGCCAAATCCAGTCATGCTTTGTGCAATAGAAGAAGA 893
Query 1247 TGAGCTTGGATTTCCTGTCTGGGACCGTCGTAAGAATCATCGCGACCGCTATCACCTTAT 1306
||||||| | ||||| |||||||||| || || |||||||| ||||||||||| |||||
Sbjct 894 TGAGCTTAGCTTTCCAGTCTGGGACCCACGAAAAAATCATCGTGACCGCTATCATCTTAT 953
Query 1307 GCCAATAATAACTCCAGCTTACCCATGCATGAATTCTAGTTACAATGTCTCTCAAAGCAC 1366
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 954 GCCAATAATAACTCCTGCATACCCATGCATGAATTCTAGTTACAATGTCTCTCAAAGCAC 1013
Query 1367 TCTTCGCGTTATGACAGAGCAGTTCCAGTTTGGTAACAATATCT-TGCAGGAGATTGAAT 1425
||||| |||||||||||||| ||||||||||| |||| |||| | |||||||||||
Sbjct 1014 ACTTCGTGTTATGACAGAGCAATTCCAGTTTGGCAACACGATCTGT-CAGGAGATTGAGC 1072
Query 1426 TAAATAAACAGCACTGGAGCTCTTTATTTGAACAATATATGTT-TTTCGAGGCATACAAA 1484
|||||||| | |||||||| || |||||||| ||||||||||| ||| |||||||| |||
Sbjct 1073 TAAATAAAAAACACTGGAGTTCCTTATTTGAGCAATATATGTTCTTT-GAGGCATATAAA 1131
Query 1485 AACTACCTTCAGGTTGATATAGTGGCAGCAGATGCAGAAGATTTATTGGCTTGGAAGGGT 1544
|||||||||||||||||| || | ||| |||||| |||||||||||||| ||||| |||
Sbjct 1132 AACTACCTTCAGGTTGATGTACTAGCATTAGATGCCGAAGATTTATTGGCATGGAAAGGT 1191
Query 1545 TGGGTGGAGTCGCGGTTCAGACAGCTGACCTTAAAGATAGAAAGAGACACTAATGGGATG 1604
||||||||||| |||||||| || |||||||| ||||||||| ||||||| |||||||||
Sbjct 1192 TGGGTGGAGTCACGGTTCAGGCAACTGACCTTGAAGATAGAACGAGACACAAATGGGATG 1251
Query 1605 TTAATGTGCCATCCC-CAACCAAATGAGTATGTAGACACGGCTAGGCAGTTTCTGCATTG 1663
||||||||||| ||| ||||||||||||||||||||||| | | |||||||| |||||
Sbjct 1252 TTAATGTGCCA-CCCTCAACCAAATGAGTATGTAGACACTTCAAAGCAGTTTCAACATTG 1310
Query 1664 TGCCTTTTTCATGGGCTTGCAGAGGGCAGAGGGAGTTGGGGGTCAAGAATGTCAACAGTT 1723
|||||||||||||||||||||||||||||| ||| |||| || |||||||||||||||||
Sbjct 1311 TGCCTTTTTCATGGGCTTGCAGAGGGCAGAAGGATTTGGTGGCCAAGAATGTCAACAGTT 1370
Query 1724 TGATATACGTGGTACTGTCGATGAGTTCAGACAAGAAGTAAACATGTATATGTTTTGGAA 1783
|||||||||||| || || || |||||||| ||||| ||||||||||||||||||||||
Sbjct 1371 TGATATACGTGGAACAGTGGACGAGTTCAGGCAAGATGTAAACATGTATATGTTTTGGAG 1430
Query 1784 ACCTGGGATGGATGTTT-TCGTTTCTCATGTTCGTAGACGACAGCTTCCACCTTTTGTTT 1842
||||||||||||||| | | |||||||||||||| ||||| ||||||||| |||||||||
Sbjct 1431 ACCTGGGATGGATGTGTAT-GTTTCTCATGTTCGAAGACGGCAGCTTCCATCTTTTGTTT 1489
Query 1843 TCCCTAATGGATATCGAAGGCCTCGGCAGTCCAGGCACCAAAATCTACCGGGTGGAAAAT 1902
| || ||||||||| ||||||||||||||| |||||||| |||| || | || ||
Sbjct 1490 TTCCAAATGGATATAAAAGGCCTCGGCAGTCAAGGCACCAGAATCAACAATGCAGAGAAC 1549
Query 1903 CTGGTGAAGATGG-CAGT-GTTTCTCAT-TCCGGCTCTGTGG-TGGAGAGGCATGCCAAG 1958
||||||| | || | || | |||| | ||| |||||| | |||| | || | |||
Sbjct 1550 CTGGTGAGGG-GGTC-GTTGCTTCTT-TGTCCAACTCTGTTGATGGATATGC--G--AAG 1602
Query 1959 CGAAAGAACGATAGTGAAATGATGGATGTGAGGCCAGAGAAACCTGAGAAGCGTGCATCT 2018
||||||| |||| |||||| |||||| |||||||||||| ||||||||||||||||
Sbjct 1603 AGAAAGAATGATAATGAAATTATGGATACCCGGCCAGAGAAACGTGAGAAGCGTGCATCT 1662
Query 2019 CTTAGTCCACAGAGTCTAGATATAGTTTCTCCTGAAAATAGTGCTATCACAACTGGTTG- 2077
| ||||||||| ||||| ||| |||||||||||| | |||| |||||| |||||| |
Sbjct 1663 CGTAGTCCACATAGTCTGGATGCAGTTTCTCCTGACAGCAGTGGTATCACTACTGGT-GA 1721
Query 2078 GACTCCTC 2085
||||||||
Sbjct 1722 GACTCCTC 1729
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 100977239495
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5