BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G32860.1 Length=749 Score E Sequences producing significant alignments: (Bits) Value Ahg491410 jgi|Araly1|491410|fgenesh2_kg.7__843__AT4G32860.1 1131 0.0 > Ahg491410 jgi|Araly1|491410|fgenesh2_kg.7__843__AT4G32860.1 Length=723 Score = 1131 bits (612), Expect = 0.0 Identities = 689/726 (95%), Gaps = 5/726 (1%) Strand=Plus/Plus Query 26 CTCTCTCTCCCTCACACACGCACATATGCAAATACACGACGACATGGAGGTTTGCTCAAC 85 ||||||||| | |||||| |||| ||||||||||||||||||||||||||||| ||||| Sbjct 1 CTCTCTCTCACACACACATACACACATGCAAATACACGACGACATGGAGGTTTGTTCAAC 60 Query 86 AGTCACAACGAAGAAGCTCTCAAGCCTGGCCAAGCTAATTCTCTTCACCATACAGAAGGT 145 |||||| |||||||||||||||||||||||||||||| | ||||||||||| |||||||| Sbjct 61 AGTCACGACGAAGAAGCTCTCAAGCCTGGCCAAGCTAGTCCTCTTCACCATCCAGAAGGT 120 Query 146 TTCAGACGCCTCACGTCACAAACTCCTCACAACCCTCGATCCACATCTACTCGCGAAACG 205 |||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| Sbjct 121 TTCAGACGCCTCACGTCATAAACTCCTCACAACCCTCGATCCACATCTACTCGCTAAACG 180 Query 206 TGGCAAGATCCTACGCAAATCCTTAAACGAAGCCGTTTCAACCTCCCACTCACGCATCAC 265 |||||||||||||||||||||| ||||||| ||||| |||||||| |||||||||||||| Sbjct 181 TGGCAAGATCCTACGCAAATCCCTAAACGACGCCGTCTCAACCTCTCACTCACGCATCAC 240 Query 266 GTGCCGTCCTTCCGACCACCAAGATGTGCGATCATCCTTCATCTCCCCTGTCCCGCTCCA 325 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 241 GTGCCGTCCTTCCGACCACCAAGATGTCCGATCATCCTTCATCTCCCCTGTCCCGCTCCA 300 Query 326 GCTAGAGTACGAGTTCAGCTGCAGCAGCACCCCACCGAGACGTTCCTACGCCACCACCGT 385 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 301 GCTAGAGTACGAGTTCAGCTGCAGCAGCACCCCACCGAGACCTTCCTACGCCACCACCGT 360 Query 386 AAGCAAAGGACGACGTAGTAACGGATCTCATAACAGACCGCTCATCAACAAGCGCCAACG 445 ||||||||| |||||||||||||| ||||| |||| |||||||||||||||||||||||| Sbjct 361 AAGCAAAGGGCGACGTAGTAACGGGTCTCACAACAAACCGCTCATCAACAAGCGCCAACG 420 Query 446 CCAAGCGTATATCCGTTACAACACACTTCCCAAGGTTCGTGACTCCATCTGGGACCGACA 505 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 CCAAGCGTATATCCGGTACAACACACTTCCCAAGGTTCGTGACTCCATCTGGGACCGACA 480 Query 506 CGTAG-CGGCGGCAGTATTTCCCGACGTAGCTAGCAGCACCGGTACGATGGAAAGCTGCC 564 ||| | |||||||||| |||||||||||||| |||||||||||||||||||||||||||| Sbjct 481 CGT-GTCGGCGGCAGTGTTTCCCGACGTAGCAAGCAGCACCGGTACGATGGAAAGCTGCC 539 Query 565 ACGTGGACAGAGCTGCGGAGGAGTTTATACAGAGTTTCTATAGACAGCTGAGGTTGCAGA 624 | |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 540 ATGTGGACAGAGCTGCGGAGGAGTTTATACAGAGGTTCTATAGACAGCTGAGGTTGCAGA 599 Query 625 AGTGGATGATGGCTCAGGAGGTTTAAAACAGTAACTTACTTTACGAAAAATCTTATCGAA 684 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| Sbjct 600 AGTGGATGATGGCTCAGGAGGTTTAAAACAGTAACTTACTTTACAAAAAATCTTATGGAA 659 Query 685 AAA-TAAAATATTAAGTATTCTAGGTAACTTTGGTAGTCTTGTTTTGACTTTCTAATTTC 743 ||| ||||| | ||||||| ||||||||||| ||||||||||||||||||||||||||| Sbjct 660 AAAATAAAA-AC-AAGTATTTTAGGTAACTTTCGTAGTCTTGTTTTGACTTTCTAATTTC 717 Query 744 TCCTTT 749 |||||| Sbjct 718 TCCTTT 723 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 27600991908 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5