BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G32860.1
Length=749
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491410 jgi|Araly1|491410|fgenesh2_kg.7__843__AT4G32860.1 1131 0.0
> Ahg491410 jgi|Araly1|491410|fgenesh2_kg.7__843__AT4G32860.1
Length=723
Score = 1131 bits (612), Expect = 0.0
Identities = 689/726 (95%), Gaps = 5/726 (1%)
Strand=Plus/Plus
Query 26 CTCTCTCTCCCTCACACACGCACATATGCAAATACACGACGACATGGAGGTTTGCTCAAC 85
||||||||| | |||||| |||| ||||||||||||||||||||||||||||| |||||
Sbjct 1 CTCTCTCTCACACACACATACACACATGCAAATACACGACGACATGGAGGTTTGTTCAAC 60
Query 86 AGTCACAACGAAGAAGCTCTCAAGCCTGGCCAAGCTAATTCTCTTCACCATACAGAAGGT 145
|||||| |||||||||||||||||||||||||||||| | ||||||||||| ||||||||
Sbjct 61 AGTCACGACGAAGAAGCTCTCAAGCCTGGCCAAGCTAGTCCTCTTCACCATCCAGAAGGT 120
Query 146 TTCAGACGCCTCACGTCACAAACTCCTCACAACCCTCGATCCACATCTACTCGCGAAACG 205
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 121 TTCAGACGCCTCACGTCATAAACTCCTCACAACCCTCGATCCACATCTACTCGCTAAACG 180
Query 206 TGGCAAGATCCTACGCAAATCCTTAAACGAAGCCGTTTCAACCTCCCACTCACGCATCAC 265
|||||||||||||||||||||| ||||||| ||||| |||||||| ||||||||||||||
Sbjct 181 TGGCAAGATCCTACGCAAATCCCTAAACGACGCCGTCTCAACCTCTCACTCACGCATCAC 240
Query 266 GTGCCGTCCTTCCGACCACCAAGATGTGCGATCATCCTTCATCTCCCCTGTCCCGCTCCA 325
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 241 GTGCCGTCCTTCCGACCACCAAGATGTCCGATCATCCTTCATCTCCCCTGTCCCGCTCCA 300
Query 326 GCTAGAGTACGAGTTCAGCTGCAGCAGCACCCCACCGAGACGTTCCTACGCCACCACCGT 385
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 301 GCTAGAGTACGAGTTCAGCTGCAGCAGCACCCCACCGAGACCTTCCTACGCCACCACCGT 360
Query 386 AAGCAAAGGACGACGTAGTAACGGATCTCATAACAGACCGCTCATCAACAAGCGCCAACG 445
||||||||| |||||||||||||| ||||| |||| ||||||||||||||||||||||||
Sbjct 361 AAGCAAAGGGCGACGTAGTAACGGGTCTCACAACAAACCGCTCATCAACAAGCGCCAACG 420
Query 446 CCAAGCGTATATCCGTTACAACACACTTCCCAAGGTTCGTGACTCCATCTGGGACCGACA 505
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CCAAGCGTATATCCGGTACAACACACTTCCCAAGGTTCGTGACTCCATCTGGGACCGACA 480
Query 506 CGTAG-CGGCGGCAGTATTTCCCGACGTAGCTAGCAGCACCGGTACGATGGAAAGCTGCC 564
||| | |||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 481 CGT-GTCGGCGGCAGTGTTTCCCGACGTAGCAAGCAGCACCGGTACGATGGAAAGCTGCC 539
Query 565 ACGTGGACAGAGCTGCGGAGGAGTTTATACAGAGTTTCTATAGACAGCTGAGGTTGCAGA 624
| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 540 ATGTGGACAGAGCTGCGGAGGAGTTTATACAGAGGTTCTATAGACAGCTGAGGTTGCAGA 599
Query 625 AGTGGATGATGGCTCAGGAGGTTTAAAACAGTAACTTACTTTACGAAAAATCTTATCGAA 684
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 600 AGTGGATGATGGCTCAGGAGGTTTAAAACAGTAACTTACTTTACAAAAAATCTTATGGAA 659
Query 685 AAA-TAAAATATTAAGTATTCTAGGTAACTTTGGTAGTCTTGTTTTGACTTTCTAATTTC 743
||| ||||| | ||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 660 AAAATAAAA-AC-AAGTATTTTAGGTAACTTTCGTAGTCTTGTTTTGACTTTCTAATTTC 717
Query 744 TCCTTT 749
||||||
Sbjct 718 TCCTTT 723
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27600991908
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5