BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G32870.1

Length=599
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg491409 jgi|Araly1|491409|fgenesh2_kg.7__842__AT4G32870.1          797    0.0  


> Ahg491409 jgi|Araly1|491409|fgenesh2_kg.7__842__AT4G32870.1
Length=563

 Score =  797 bits (431),  Expect = 0.0
 Identities = 487/515 (95%), Gaps = 0/515 (0%)
 Strand=Plus/Plus

Query  1    GCATCGAAGCAAAATCGTAGGCCAAATGGGAACGGAAACGGTGTCGTTTAAGTGGGAGGG  60
            ||| ||||||||| ||||||| ||||||||||||||||||| ||||||||||||||| ||
Sbjct  1    GCACCGAAGCAAATTCGTAGGTCAAATGGGAACGGAAACGGCGTCGTTTAAGTGGGAAGG  60

Query  61   TAAGAAAGTCGCTCAAGTCAACGGTGTCACGGCTGAGAAAGTTTGGTCGGTTTTTTCTGA  120
             ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  61   CAAGAAAGTCGCTCAAGTCAACGGTGTCACGGCTGAGAAAGTCTGGTCGGTTTTTTCTGA  120

Query  121  CTTCTGCAACGTCCAAGAGTGGTTCCCATCAGTCGATACGTGTTACCGAGTCCAAGGAAC  180
            ||| |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct  121  CTTTTGCAACGTCCAAGAGTGGTTCCCAGCAGTCGACACGTGTTACCGAGTCCAAGGAAC  180

Query  181  CGATGGTGTACCGGGTCTGATCCGATACTGCTCCACCACCAAAACCAAGGAAGAGGGAAG  240
            |||||||| |||||||||||||||||||||| |||| ||||||||||||||||||| |||
Sbjct  181  CGATGGTGAACCGGGTCTGATCCGATACTGCGCCACGACCAAAACCAAGGAAGAGGAAAG  240

Query  241  CAGGTGGGCTAAAGAGAAGCTGGTCAAGATCGATCCCATTGGACGGTGTTTGAGCTATGA  300
            ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct  241  CAGGTGGGCTAAAGAGAGGCTGGTCAAGATGGATCCCATTGGACGGTGTTTGAGCTATGA  300

Query  301  GATCCTCGAGAATAACGTAGGGTTTAGATCTTACGTGGCGACAGTCCAAGTAACGCCAGT  360
            ||| |||||||||||||| ||||| ||||||||||||||||||||| |||||| ||||||
Sbjct  301  GATTCTCGAGAATAACGTTGGGTTCAGATCTTACGTGGCGACAGTCGAAGTAATGCCAGT  360

Query  361  GGACGGTGAAGATCAAGTGTCTCGAATCGAGTGGTCGTTTGTTGCCGATCCTGTTGATGG  420
            ||||||||| |||||||| || |||||||||||||||||||| |||||||||||||||||
Sbjct  361  GGACGGTGACGATCAAGTATCACGAATCGAGTGGTCGTTTGTGGCCGATCCTGTTGATGG  420

Query  421  TTGGAAGAAGGAAGACCTCGAATCATACGTTGACTTTTGCCTTCAACATATGGCCAACAA  480
            |||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||
Sbjct  421  TTGGAAGAAGGAAGACCTTGAATCCTACGTTGACTTTTGCCTTCAACATATGGCCAAGAA  480

Query  481  AATGGAACTCAATCTGTAATATCTTTTTCTTTCTT  515
            |||||||||||||||||||||||||||||||||||
Sbjct  481  AATGGAACTCAATCTGTAATATCTTTTTCTTTCTT  515



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21939463675


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5