BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G32880.1
Length=3023
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491408 jgi|Araly1|491408|fgenesh2_kg.7__841__AT4G32880.1 4918 0.0
Ahg473277 jgi|Araly1|473277|fgenesh2_kg.1__3231__AT1G30490.1 289 1e-76
Ahg496218 jgi|Araly1|496218|fgenesh2_kg.8__2034__AT5G60690.1 139 1e-31
> Ahg491408 jgi|Araly1|491408|fgenesh2_kg.7__841__AT4G32880.1
Length=3015
Score = 4918 bits (2663), Expect = 0.0
Identities = 2907/3024 (96%), Gaps = 19/3024 (1%)
Strand=Plus/Plus
Query 9 TCTCTCTCATCCCACTACAAATCTTATATACAAGTTTCGCAAATCTTGACTCTTCACGTT 68
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TCTCTCTCATCCCACTACAAATCTTATATACAAGTTTCGCAAATCTTGACTCTTCACGTT 60
Query 69 GTGGATCTATCTAGAGAGATAAGTAAGAGAGAGGAAGAGTAAGGAAGAAAGTGGTTGAAC 128
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 61 GTGGATCTATCTAGAGAGATAAGTAAGAGAGAGGAAGAGTAAGGACGAAAGTGGTTGAAC 120
Query 129 TGTAGCAGAGTCTGAGGTTTGAATCTTGTAGTTCCCATTGAAGCATGCTTCACCGTTTTT 188
|||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 121 TGTAGCAGCGTCTGAGGTTTGAATCTTGTAGTTCGCATTGAAGCATGCTTCACCGTTTTT 180
Query 189 TCCGAAGGAAGTTACTCATCCACTGAGAGAGAAAGAGGGATTTGG-A-----GATAGAGA 242
||||||||||||||||||||||||||||||||||||||||||||| | || |||||
Sbjct 181 TCCGAAGGAAGTTACTCATCCACTGAGAGAGAAAGAGGGATTTGGAACTTTTGAGAGAGA 240
Query 243 AAGAAATTTCTCAGATGGGTTTGTGAGAATTCACAGC-AAGAGCAAGAAACTCCTATATC 301
|| |||||||||||||||||||||||||||||||||| || ||||||||||| |||||||
Sbjct 241 AACAAATTTCTCAGATGGGTTTGTGAGAATTCACAGCGAA-AGCAAGAAACTTCTATATC 299
Query 302 TTCCTTTGCTTCCAGAGACCAGCGTGATCAAAAACAAATATTTTTACGG-AAC-AAAATT 359
||||||||||||||||||||||| |||||| ||||||||| || ||||| | | ||||
Sbjct 300 TTCCTTTGCTTCCAGAGACCAGCTTGATCAGAAACAAATA-TTCTACGGTATCTAAAA-C 357
Query 360 AAATAGAGAGATCGGAGAGGATCAAAGATGGGAGGAGGAAGCAATAATAGTCACAATATG 419
||||||||||||| ||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 358 AAATAGAGAGATCAGAGAGGATCAAAGAT--G-GGAGGAAGCAATAATAGTCACAATATT 414
Query 420 GACAACGGGAAGTACGTGAGGTACACTCCTGAACAAGTGGAAGCTCTGGAGAGACTCTAC 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 415 GACAACGGGAAGTACGTGAGGTACACTCCTGAACAAGTGGAAGCTCTGGAGAGACTCTAC 474
Query 480 AATGACTGTCCTAAACCGAGCTCTATGCGCCGCCAACAGCTAATCCGCGAATGTCCTATC 539
||||||||||||||||||||||||||||||||||| || || ||||| ||||||||||||
Sbjct 475 AATGACTGTCCTAAACCGAGCTCTATGCGCCGCCAGCAACTGATCCGGGAATGTCCTATC 534
Query 540 CTCTCCAACATCGAGCCTAAACAGATAAAAGTCTGGTTCCAGAACCGCAGGTGTAGAGAA 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 535 CTCTCCAACATCGAGCCTAAACAGATAAAAGTCTGGTTCCAGAACCGCAGGTGTAGAGAA 594
Query 600 AAACAGCGAAAAGAGGCGTCACGACTTCAAGCTGTGAATAGGAAGCTAACGGCAATGAAC 659
|||||||| ||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 595 AAACAGCGGAAAGAGGCGTCTCGACTTCAAGCTGTGAATCGGAAGCTAACGGCAATGAAC 654
Query 660 AAGCTTTTGATGGAAGAGAATGACCGCTTGCAAAAGCAAGTGTCTCACTTGGTTTATGAG 719
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 655 AAGCTTTTGATGGAAGAGAATGACCGCTTGCAAAAGCAAGTGTCTCACTTGGTTTACGAG 714
Query 720 AACAGCTATTTTCGCCAACATCCTCAAAACCAGGGGAATTTGGCTACCACAGATACTAGC 779
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||| ||||
Sbjct 715 AACAGCTATTTTCGCCAACATCCTCAAAACCAGGGGAATTTGGCCACCACGGATAATAGC 774
Query 780 TGTGAGTCAGTGGTGACGAGTGGTCAACACCACTTGACCCCTCAACATCAGCCTCGTGAT 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 775 TGTGAGTCAGTGGTGACGAGTGGTCAACACCACTTGACCCCTCAACATCAGCCTCGTGAT 834
Query 840 GCTAGTCCTGCTGGATTATTGTCCATTGCGGATGAAACTTTAACAGAGTTCATTTCCAAG 899
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 835 GCTAGCCCTGCTGGATTATTGTCCATTGCGGATGAAACTTTAACAGAGTTCATTTCTAAG 894
Query 900 GCGACTGGAACCGCTGTCGAGTGGGTCCAAATGCCTGGGATGAAGCCTGGTCCGGATTCC 959
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 895 GCCACTGGAACCGCTGTCGAGTGGGTCCAAATGCCTGGGATGAAGCCTGGTCCGGATTCC 954
Query 960 ATAGGAATCGTTGCTATTTCTCATGGATGCACGGGAATCGCTGCTCGTGCTTGCGGCCTT 1019
||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||
Sbjct 955 ATAGGAATCGTTGCTATTTCTCACGGATGCACGGGAATCGCAGCCCGTGCTTGCGGCCTT 1014
Query 1020 GTGGGTCTTGATCCCACAAGGGTCGCGGAGATCCTAAAGGATAAGCCTTGTTGGTTGCGT 1079
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1015 GTGGGTCTTGATCCCACAAGGGTCGCGGAGATCCTAAAGGATAAGCCTTGTTGGTTGCGT 1074
Query 1080 GATTGCAGATCTCTGGATATAGTTAACGTACTATCCACTGCAAATGGTGGAACCCTTGAA 1139
|||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 1075 GATTGCAGATCTCTAGATATTGTTAACGTACTCTCCACTGCAAATGGTGGAACCCTTGAA 1134
Query 1140 CTAATCTACATGCAGCTTTATGCGCCGACAACACTGGCACCAGCTCGTGACTTCTGGATG 1199
||||||||||||||| |||| |||||||||||| |||| |||||||||||||||||||||
Sbjct 1135 CTAATCTACATGCAGTTTTACGCGCCGACAACATTGGCGCCAGCTCGTGACTTCTGGATG 1194
Query 1200 CTACGTTACACATCTGTAATGGAAGACGGGAGCCTTGTGATATGCGAACGATCACTGAAC 1259
|||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 1195 CTACGTTACACATCTGTAATGGAAGACGGGAGCCTTGTGATATGCGAACGCTCGTTGAAC 1254
Query 1260 AATACACAAAACGGGCCAAGTATGCCTCCGTCTCCTCATTTCGTTAGGGCAGAGATTTTA 1319
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 1255 AATACACAAAACGGGCCAAGTATGCCTCCGTCTCCTCATTTCGTTAGAGCAGAGATTCTA 1314
Query 1320 CCAAGTGGTTACCTCATTAGACCTTGCGAAGGAGGTGGATCCATTCTTCACATTGTCGAT 1379
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 1315 CCAAGTGGTTACCTCATTAGACCCTGCGAAGGAGGTGGATCCATTCTTCACATTGTTGAT 1374
Query 1380 CATTTCGATCTTGAGCCATGGAGTGTGCCAGAAGTTCTTCGTTCTCTCTATGAGTCCTCC 1439
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 1375 CATTTCGATCTTGAGCCATGGAGTGTGCCCGAAGTTCTTCGTTCTCTCTATGAGTCGTCC 1434
Query 1440 ACTTTACTCGCCCAAAGAACTACAATGGCCGCTCTGCGCTATTTGAGGCAAATATCTCAA 1499
|| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 1435 ACGTTACTCGCCCAAAGAACCACCATGGCCGCTCTGCGCTATTTGAGGCAAATATCTCAA 1494
Query 1500 GAGATTTCACAACCTAACGTAACAGGTTGGGGAAGAAGACCAGCGGCTCTTAGAGCACTT 1559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1495 GAGATTTCACAACCTAACGTAACAGGTTGGGGAAGAAGACCAGCGGCTCTTAGAGCACTT 1554
Query 1560 AGCCAAAGGCTTAGCAAAGGATTCAACGAAGCAGTGAATGGGTTCAGCGATGAAGGATGG 1619
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1555 AGCCAAAGGCTCAGCAAAGGATTCAACGAAGCAGTTAATGGGTTCAGCGATGAAGGATGG 1614
Query 1620 TCCATCCTAGAGAGTGATGGTATCGATGATGTCACTCTTCTTGTGAACTCCTCTCCCACA 1679
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1615 TCCATCCTAGAGAGCGATGGTATCGATGATGTCACTCTTCTTGTGAACTCCTCTCCCACA 1674
Query 1680 AAGATGATGATGACTTCAAGTCTCCCATTTGCCAATGGCTACACTTCTATGCCTAGCGCG 1739
||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| |||
Sbjct 1675 AAGATGATGATGACTTCAAGTCTTCCATTTGCCAATGGCTTCACTTCTATGCCTAGTGCG 1734
Query 1740 GTCTTATGTGCCAAAGCTTCCATGTTATTACAAAATGTTCCACCTTCGATTCTGCTGCGG 1799
|||||||||||||||||||||||| ||||||||||||||||||| || ||||| ||||||
Sbjct 1735 GTCTTATGTGCCAAAGCTTCCATGCTATTACAAAATGTTCCACCCTCAATTCTTCTGCGG 1794
Query 1800 TTCTTGAGGGAACATAGACAAGAATGGGCAGACAATAGCATCGATGCATATTCGGCCGCA 1859
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 1795 TTCTTGAGGGAACATAGGCAAGAATGGGCAGACAATAGCATCGATGCATACTCGGCCGCA 1854
Query 1860 GCCATCAAAGCAGGCCCTTGTAGCTTACCAATCCCTCGCCCAGGGAGCTTTGGTGGTCAA 1919
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1855 GCCATCAAAGCAGGCCCTTGTAGCTTACCAATCCCTCGCCCAGGGAGCTTTGGTGGTCAA 1914
Query 1920 GTCATTCTTCCTCTAGCTCACACTATAGAGAATGAAGAGTTTATGGAAGTCATTAAGCTT 1979
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1915 GTCATTCTTCCTCTAGCTCACACTATAGAGAATGAAGAGTTTATGGAAGTGATTAAGCTT 1974
Query 1980 GAGAGCTTGGGGCACTACCAAGAAGACATGATGATGCCTGCTGATATCTTCCTTCTGCAA 2039
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1975 GAGAGCTTGGGGCACTACCAAGAAGACATGATGATGCCTGCTGATATCTTCCTTCTGCAA 2034
Query 2040 ATGTGCAGTGGGGTGGATGAGAACGCAGTTGAATCATGCGCAGAGCTTATATTTGCACCA 2099
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2035 ATGTGCAGTGGGGTGGATGAGAACGCAGTTGAATCATGCGCAGAGCTTATCTTTGCACCA 2094
Query 2100 ATCGACGCATCTTTCTCTGATGATGCACCAATCATTCCTTCCGGTTTCCGCATCATTCCT 2159
|||||||| ||||||||||||||||| || |||||||||||||| |||||||||||||||
Sbjct 2095 ATCGACGCCTCTTTCTCTGATGATGCCCCCATCATTCCTTCCGGCTTCCGCATCATTCCT 2154
Query 2160 CTAGATTCCAAATCAGAGGGGTTGAGTCCTAACCGAACGCTAGACCTAGCGTCGGCTCTA 2219
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2155 CTAGATTCCAAATCAGAGGGGTTGAGTCCTAACCGAACGCTAGACCTAGCGTCGGCTCTA 2214
Query 2220 GACGTAGGGAGCAGAACAGCCGGAGATTCATGTGGAAGCAGAGGAAACTCAAAGTCCGTT 2279
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2215 GACGTAGGGAGCAGAACAGCCGGAGATTCATGTGGAAGCAGAGGGAACTCAAAGTCCGTG 2274
Query 2280 ATGACTATAGCGTTTCAGCTAGCTTTTGAGATGCATATGCAAGAGAATGTAGCCTCAATG 2339
|||||||||||||||||||||||||||||||||||||||||||| || ||||| || |||
Sbjct 2275 ATGACTATAGCGTTTCAGCTAGCTTTTGAGATGCATATGCAAGAAAACGTAGCTTCCATG 2334
Query 2340 GCTAGACAGTATGTAAGAAGTGTGATCGCGTCGGTTCAACGGGTCGCACTTGCTCTCTCT 2399
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2335 GCTAGACAATATGTAAGAAGTGTGATCGCGTCGGTTCAACGGGTCGCACTTGCTCTCTCT 2394
Query 2400 CCTTCTTCTCATCAGCTAAGTGGCTTGCGTCCTCCACCCGCGTCACCCGAAGCTCACACT 2459
||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 2395 CCTTCCTCTCATCAGCTAAGTGGCTTGCGTCCTCCACCCGCGTCACCGGAAGCTCATACC 2454
Query 2460 CTCGCTCGCTGGATCTCTCACTCTTATAGATGTTACCTTGGCGTTGATCTTCTCAAACCT 2519
||||||||||||||||||||||| |||||||||||||||||||||||||| || ||||||
Sbjct 2455 CTCGCTCGCTGGATCTCTCACTCCTATAGATGTTACCTTGGCGTTGATCTCCTTAAACCT 2514
Query 2520 CATGGAACTGATCTTCTCAAGTCTCTTTGGCACCATCCTGACGCTGTCATGTGTTGCTCA 2579
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2515 CATGGAACCGATCTTCTCAAGTCTCTTTGGCACCATCCTGACGCCGTCATGTGTTGCTCA 2574
Query 2580 CTCAAGGCCTTATCTCCGGTATTCACATTTGCGAACCAAGCTGGTTTAGACATGCTGGAG 2639
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2575 CTCAAGGCCTTAGCGCCGGTATTCACATTTGCGAACCAAGCTGGTTTAGACATGCTGGAG 2634
Query 2640 ACGACGTTGGTGGCACTTCAAGATATCACTCTCGACAAGATCTTCGACAACAACAACGGG 2699
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2635 ACGACGTTGGTGGCACTTCAAGATATCACTCTCGACAAGATCTTCGACAACAACAACGGG 2694
Query 2700 AAGAAGACTTTATCCTCCGAATTCCCTCAGATCATGCAACAGGGGTTTATGTGTATGGAT 2759
||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2695 AAGAAGACTTTATGCTCCGATTTCCCTCAGATCATGCAACAGGGGTTTATGTGTATGGAT 2754
Query 2760 GGAGGAATATGCATGTCGAGCATGGGAAGAGCAGTAACGTACGAGAAGGCTGTTGGGTGG 2819
||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 2755 GGAGGAATATGCATGTCAAGCATGGGAAGAGCAGTAACGTACGAGAAGGCTGTTGCATGG 2814
Query 2820 AAAGTGTTGAACGACGACGAAGATCCTCATTGTATCTGCTTCATGTTCCTCAACTGGTCT 2879
|||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 2815 AAAGTGTTGAACGACGACGAAGATGCTCATTGTATCTCCTTCATGTTCCTCAACTGGTCT 2874
Query 2880 TTTATATGACCTTTTTTCCATGTTTTTCCTTAATTATCAAAACACAGACCtttttttCCG 2939
||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 2875 TTTATATGAAATTTTTTCCAAGTTTTTCCTTAATTATCAAAACACAGCCCTTTTTTTCCA 2934
Query 2940 GAGATATATTTATATATACTCTTA-CTCTTAGTTAATTTGTATTTAGTTATATCATCTCT 2998
|||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 2935 GAGATATATTTATATATACTCTTAACTCTTAGTTAATTTGTATTTAGTTAT--CATCTCT 2992
Query 2999 AATTTTGAAAGAATTTACTTACTT 3022
||||| ||||||||||| ||||||
Sbjct 2993 AATTT-GAAAGAATTTATTTACTT 3015
> Ahg473277 jgi|Araly1|473277|fgenesh2_kg.1__3231__AT1G30490.1
Length=2838
Score = 289 bits (156), Expect = 1e-76
Identities = 610/819 (74%), Gaps = 72/819 (9%)
Strand=Plus/Plus
Query 425 CGGGAAGTACGTGAGGTACACTCCTGAACAAGTGGAAGCTCTGGAGAGACTCTACAATGA 484
||| |||||||| || ||||| || |||||||| |||||||| |||||| | || |||
Sbjct 244 CGGCAAGTACGTTAGATACACGCCGGAACAAGTTGAAGCTCTTGAGAGAGTTTATGCTGA 303
Query 485 CTGTCCTAAACCGAGCTCTATGC-GCCGCCAACAGCTAATCCGCGAATGTCCTATCCTCT 543
||||||||||| |||||| | | | | |||||||| || || |||||||| || ||||
Sbjct 304 GTGTCCTAAACCTAGCTCTCT-CAGAAGACAACAGCTTATTCGTGAATGTCCGATTCTCT 362
Query 544 CCAACATCGAGCCTAAACAGATAAAAGTCTGGTTCCAGAACCGCAGGTGTAGAGAAAAAC 603
|||||||||||| |||||| ||||| ||||||||||| ||||| ||| |||| || |
Sbjct 363 GTAACATCGAGCCTCGACAGATCAAAGTTTGGTTCCAGAATCGCAGATGTCGAGAGAAGC 422
Query 604 AGCGAAAAGAGGC-GTCACGACTTCAAG-CTGTGAATAGGAAGCTAACG-GCAATGAACA 660
|| | |||||| | | | || |||| || | ||||| |||||||| | | || |||||||
Sbjct 423 AGAGGAAAGAGTCAG-CTCGTCTTC-AGACAGTGAACAGGAAGCTGA-GTGCCATGAACA 479
Query 661 AGCTTTTGATGGAAGAGAATGACCGCTTGCAAAAGCAAGTGTCTCA-CTTGGTTTATGAG 719
|||||||||||||||||||||| || ||||| |||||||| || || |||||||||||||
Sbjct 480 AGCTTTTGATGGAAGAGAATGATCGTTTGCAGAAGCAAGTCTC-CAACTTGGTTTATGAG 538
Query 720 AACAGCTATTTTCGCCAACATCCTCAAAAC-CAGGGGAATT-TGG--CTACCACAGATA- 774
|| | | | | | |||||| || | || | || ||| | |||||||| |
Sbjct 539 AATGGGT-TCAT-GA-AACATCG--AATCCACACTGC--TTCTGGGACGACCACAGACAA 591
Query 775 CTAGCTGTGAGTCAGTGGT-GACGAGTGGTCAACA-C--CA-CTTG-ACC-CCTCAACA- 826
| ||||||||||| ||||| | || |||||| || | || | | | || |||||
Sbjct 592 C-AGCTGTGAGTCTGTGGTCGT-GATTGGTCAGCAACGTCAGCA-GCAAAACC-CAACAC 647
Query 827 -TCAGCCTC----G--TGATGCTAGT--CCT-GCTGGATTATTGTC-C-ATTGCGGATGA 874
||||| || | |||||||| || ||| || || || | |||||||| ||
Sbjct 648 ATCAGCATCCACAGCGTGATGCTAACAACCCAGCTA-ATC-TTCTCTCGATTGCGGAGGA 705
Query 875 AACTTTAACAGAGTTCATTTCCAAGGCGACTGGAACCGCTGTCGAGTGGGTCCAAATGCC 934
|| || | |||||| ||| |||||| || ||||| |||||||| ||||| || |||
Sbjct 706 GACCTTGGCGGAGTTCCTTTGCAAGGCTACAGGAACTGCTGTCGACTGGGTTCAGATGAT 765
Query 935 TGGGATGAAGCCTGGTCCGGATTCCATAGGAATCGTTGCTATTTCTCATGGA--TGCACG 992
|||||||||||||||||||||||| || || ||||| ||| |||| | | | |||| |
Sbjct 766 TGGGATGAAGCCTGGTCCGGATTCTATTGGCATCGTAGCTGTTTCAC--GCAACTGCA-G 822
Query 993 -GGAATCGCTGCTCGTGCTTGCGGCCTTGTGGGTCTT-GATCCCAC-AAGGGTCGCGGAG 1049
||||| || || ||||| |||||||| ||| || || || |||| |||| ||| ||
Sbjct 823 TGGAATAGCAGCACGTGCCTGCGGCCTCGTGAGT-TTAGAACCCATGAAGG-TCGTTGAA 880
Query 1050 ATCCT-AAAGGATAAG-CCTTGTTGGTTGCGTGATTG-CAGATCTCTGGATA-TAGTTAA 1105
||||| |||| || | || | |||||| ||||| || | ||| | | || | | | ||
Sbjct 881 ATCCTCAAAG-ATC-GTCCATCTTGGTTCCGTGACTGTC-GATGTGTCGAGACTC-TGAA 936
Query 1106 CGT-ACTATCC-ACTGCAAATGGTGGAACCCTTGAACTAATCTACA-TGCAGCTTTATGC 1162
|| | || || |||| ||||||||| || |||| || || ||| | ||| |||||||
Sbjct 937 TGTTA-TA-CCTACTGGAAATGGTGGTACTATTGAGCTTGTCAACACT-CAGATTTATGC 993
Query 1163 GCCGACAACACTGGCACCAGCTCGTGACTTCTGGATGCT 1201
|| |||||| | ||| ||||||||||||| |||| |||
Sbjct 994 TCCTACAACATTAGCAGCAGCTCGTGACTTTTGGACGCT 1032
> Ahg496218 jgi|Araly1|496218|fgenesh2_kg.8__2034__AT5G60690.1
Length=3212
Score = 139 bits (75), Expect = 1e-31
Identities = 190/245 (78%), Gaps = 10/245 (4%)
Strand=Plus/Plus
Query 842 TAGTCCTGCTGGATT-ATTGTCCATTGCGGATGAAACTTTAACAGAGTTCATTTCCAAGG 900
||||||||||||||| | | || || || || || ||||| |||||||| | |||||||
Sbjct 1125 TAGTCCTGCTGGATTGA-TCTCAATCGCAGAGGAGACTTTGGCAGAGTTCCTATCCAAGG 1183
Query 901 CGACTGGAACCGCTGTCGAGTGGGTCCAAATGCCTGGGATGAAGCCTGGTCCGGATTCCA 960
| || ||||| ||||| || ||||| || |||||||||||||||||||||||||||||
Sbjct 1184 CTACAGGAACTGCTGTTGATTGGGTTCAGATGCCTGGGATGAAGCCTGGTCCGGATTCGG 1243
Query 961 TAGGAATCGTTGCTATTTCTCATGGATGCACG-GGAATCGCTGCTCGTGCTTGCGGCCTT 1019
| || ||| |||||||||| || |||||| | ||| | || ||||| || || || |||
Sbjct 1244 TTGGCATCTTTGCTATTTCGCAAAGATGCA-GTGGAGTGGCAGCTCGAGCCTGTGGTCTT 1302
Query 1020 GTGGGTCTT-GATCCCAC-AAGGGTCGCGGAGATCCT-AAAGGATAAGCCTTGTTGGTTG 1076
|| || || || || | ||| | || |||||||| |||| || ||| | ||||||
Sbjct 1303 GTTAGT-TTAGAACCTATGAAGATT-GCAGAGATCCTCAAAG-ATCGGCCATCTTGGTTC 1359
Query 1077 CGTGA 1081
|||||
Sbjct 1360 CGTGA 1364
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 114156464265
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5