BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G32890.1
Length=1202
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491407 jgi|Araly1|491407|fgenesh2_kg.7__840__AT4G32890.1 1618 0.0
> Ahg491407 jgi|Araly1|491407|fgenesh2_kg.7__840__AT4G32890.1
Length=1191
Score = 1618 bits (876), Expect = 0.0
Identities = 1106/1212 (91%), Gaps = 36/1212 (3%)
Strand=Plus/Plus
Query 1 ACATGAACCATAACTTTCTCTAACATCACTCTCCTTTACACAACCCCAAAAATAGACCTC 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1 ACATGAACCATAACTTTCTCTAACATCACTCTCCTTTACACAACCCTAAAAATAGACCTC 60
Query 61 ACCTCTCTCGTCTTCTCTATTCTCTCCGCTCCTTAATTTCCAATTCCAACCTTCTCTGTT 120
||||| || | || || || | | || || |||| || ||| |||||||||||
Sbjct 61 TTCTCTC-CG-C-TC-CT-TT-T-T---TTCATTTATTTACAGTTCTAACCTTCTCTG-- 108
Query 121 TTGCCTTGATGGAAAAGAT-AGCTCCGGAGCTCTTCCTCGTCGCCGGTAACCCGGACTCT 179
|| || |||||| | | | || ||||||| |||||||||||||||||| | ||||||
Sbjct 109 TT---TT-ATGGAACGGCTAACCT-CGGAGCTTTTCCTCGTCGCCGGTAACACTGACTCT 163
Query 180 TTCGTCGTCGACGACCTCCTCGACTTCTCTAACGACGACGGCGAAGTTGACGACGGCTTA 239
|||||||||||||||||||| ||||| |||||||||||||| ||| |||||||||||||
Sbjct 164 TTCGTCGTCGACGACCTCCTTGACTTTTCTAACGACGACGGTGAAATTGACGACGGCTTT 223
Query 240 AACACTCTTCCCGATTCTT-CAACACTCTCCACCGGCACTCTCACCGACAGTTCCAACTC 298
|||||||||||||||||| | || ||||||||||||||||||||||||||||||||||
Sbjct 224 GACACTCTTCCCGATTCTTCCGCCA-TCTCCACCGGCACTCTCACCGACAGTTCCAACTC 282
Query 299 CTCCTCGCTTTTCACCGACGGCACTGGCTTCTCCGACCTATATATTCCGA-ATGACGATA 357
|||||||||||||||||||||||||||||| |||||||| | | |||||| | |||||||
Sbjct 283 CTCCTCGCTTTTCACCGACGGCACTGGCTTTTCCGACCTCTGTGTTCCGAGA-GACGATA 341
Query 358 TAGCAGAATTAGAATGGTTATCAAATTTTGTGGAAGAATCATTCGCAGGAGAAGACCAAG 417
|||| |||||||||||| |||||||||||||||||||||||||| ||||||||| |||||
Sbjct 342 TAGCTGAATTAGAATGGCTATCAAATTTTGTGGAAGAATCATTCTCAGGAGAAGTCCAAG 401
Query 418 ACAAGCTTCACTTATTTTCCGGTTTAAAAAACCCTCAAACCACCGGGTCGACCCTGACCC 477
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 402 ACAAGCTTCACTTATTATCCGGTTTAAAAAACCCTCAAACCACCGGGTCGACCCTGACCC 461
Query 478 ACTTAATTAAACCCGAACCCGAACTTGA---TCATCAATTCATCGACATCGATGAATCCA 534
|| | ||||||||||||||||||| || | |||||||||||||||||||||||||||
Sbjct 462 ACCTGATTAAACCCGAACCCGAACCCGATTTTGATCAATTCATCGACATCGATGAATCCA 521
Query 535 ACGTCGCCGTTCCTGCCAAGGCCAGAAGCAAGAGATCACGTTCTGCAGCCTCCACGTGGG 594
||||||| ||||| ||||| || ||||||||||||||||| |||||||||||||||||||
Sbjct 522 ACGTCGCTGTTCCGGCCAAAGCGAGAAGCAAGAGATCACGCTCTGCAGCCTCCACGTGGG 581
Query 595 CTTCCCGTCTTTTATCCTTAGCCGATTCCGACGAAACCAATCCCAAGAAGAAACAACGAA 654
||||||| ||||||||| ||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 582 CTTCCCGCCTTTTATCCCTAGCCGACTCCAACGAAACCAATCCCAAGAAGAAACAACGAA 641
Query 655 GAGTGAAAGAACAAGACTTCGCCGGAGATATGGACGTGGATTGCGGAGAAAGC-GGAGGA 713
|||| ||||||||||||||||||| |||||||||||| || |||||||||| | ||||||
Sbjct 642 GAGTTAAAGAACAAGACTTCGCCGCAGATATGGACGTAGACTGCGGAGAAA-CTGGAGGA 700
Query 714 GGACGACGTTGTTTGCACTGCGCGACGGAGAAGACGCCGCAATGGAGGACGGGACCTATG 773
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 701 GGACGACGTTGTCTGCACTGCGCGACGGAGAAGACGCCGCAATGGAGGACGGGACCGATG 760
Query 774 GGTCCGAAGACGCTTTGTAACGCTTGCGGAGTGAGGTACAAATCAGGGAGGCTCGTGCCG 833
|||||||||||||| || |||||||||||||| |||||||||||||||||||||||||||
Sbjct 761 GGTCCGAAGACGCTGTGCAACGCTTGCGGAGTAAGGTACAAATCAGGGAGGCTCGTGCCG 820
Query 834 GAGTATAGACCGGCGTCGAGTCCGACGTTCGTGATGGCGAGGCACTCGAACTCTCACCGG 893
||||||||||||||||| || || ||||||||||||||||| ||||||||||||||||||
Sbjct 821 GAGTATAGACCGGCGTCAAGCCCTACGTTCGTGATGGCGAGACACTCGAACTCTCACCGG 880
Query 894 AAAGTGATGGAGCTCCGGCGACAGAAGGAGATGAGAGACGAGCATTTGCTGAGTCAGCTT 953
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 881 AAAGTGATGGAGCTCCGGCGACAGAAGGAGATGAGAGACGAGCATTTGCTGAGTCAGCTT 940
Query 954 AGGTGTGAGAATCTACTGATGGATATCAGATCCAACGGTGAAGATTTCTTAATGCATAAT 1013
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 941 AGGTGTGAGAATCTACTGATGGATATCAGATCCAACGGTGAAGATTTAGTAATGCATAAT 1000
Query 1014 AATACTAACCACGTGGCTCCTGATTTTAGACACTTAATCTAGTTTTCTATTTCCACGTGG 1073
|||| ||||||||| ||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 1001 AATAATAACCACGTTGCTCCTGATTTTAGACACTTAATCTAGCTTCCTATTTCCACGTGG 1060
Query 1074 ATAATTTCGCAATAATTTGTTCGTTTCGTTTAGCTTTAtttttttttttttcctttttaa 1133
|||||||||||||||||||||| |||||||||||||| ||||||||||||| |||||||
Sbjct 1061 ATAATTTCGCAATAATTTGTTCTTTTCGTTTAGCTTTTTTTTTTTTTTTTTT-TTTTTAA 1119
Query 1134 cat-tt----gtttttcattttCTGCAGACTACT--T-CTAGTACTATTGATATATTTGA 1185
||| || |||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 1120 CATCTTAATTGTTTTTCATTTTCTGCAGACTACTACTACTAGTACTATTGATATATTTGA 1179
Query 1186 TAGCTTTTGTTT 1197
|| |||||||||
Sbjct 1180 TAACTTTTGTTT 1191
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44870673309
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5