BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G32900.2
Length=866
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491406 jgi|Araly1|491406|fgenesh2_kg.7__839__AT4G32900.1 1195 0.0
> Ahg491406 jgi|Araly1|491406|fgenesh2_kg.7__839__AT4G32900.1
Length=823
Score = 1195 bits (647), Expect = 0.0
Identities = 732/772 (95%), Gaps = 9/772 (1%)
Strand=Plus/Plus
Query 12 AAGGCTTAGCTTTGTTCCTCTGTCGCCTTGGAGA-ATCTCCAGAAGCGTATCATGTGGCC 70
||||||||||||| ||||||||||||| ||||| ||| |||||||| || |||||||||
Sbjct 1 AAGGCTTAGCTTTCTTCCTCTGTCGCCGAGGAGATATCGCCAGAAGCATACCATGTGGCC 60
Query 71 TTCGTCTCGAAACTCTTCGCAGCCTCAAGCTATGAGACAAGAAAAGAAGTCGATATCTGT 130
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 61 TTCGTCTCGAAACTCTTCGCAGCCTCAAGCTATGAGACAAGACAAGAAGTCGATATCTGG 120
Query 131 GAGTTTTAGAGCAGAGAATCTCATACCAGGGGTTGTGATAGGATTCATCATAGGTATGAT 190
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GAGTTTTAGGGCAGAGAATCTCATACCAGGGGTTGTGATAGGATTCATCATAGGTATGAT 180
Query 191 ATTGGATTTATCACAGCAAGTGACCTCCCCAGTGAAAAGGAGCAGACTTTTATCCAGCAA 250
||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 181 ATTGGATTTATCACAACAAGTGAAATCCCCAGTGAAAAGGAGCAGACTTTTATCGAGCAA 240
Query 251 GGTCCAGAAGCAGAGTTCTGTACCAGGCAATGGCAAGGACCAAGAGCTTAAAATGGTACT 310
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 241 GGTCCAGAAGCAGAGTTCTGTACCAGGCAATGGCAAGGACCAAGAGCTTAAAATGGTATT 300
Query 311 GGTAGTTAGGCAAGACTTGAAGATGAGAACGGGCAAAATTGCGTCACAGTGTGCACATGC 370
||||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||
Sbjct 301 GGTAGTTAGGCAAGACTTGAAGATGAGGACAGGCAAAATTGCGTCACAGTGTGCCCATGC 360
Query 371 TGCCACCGGCATGTATGCAGAGTTGATGCAGAGTGACCGATACCTTCTGCGGCGATGGGA 430
|||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct 361 TGCCACCGGCATGTATGCAGAGTTGATGCAGAGTGACCGATATCTTCTGAGGCGATGGGA 420
Query 431 GGAAAATGGGCAGCCAAAGATAGTCGTCACTTGCAAAAACCAGCAAGAAA--T--GAATA 486
||||| ||||| ||||||||||| ||||||||||||||||||||||||| | |||||
Sbjct 421 AGAAAACGGGCAACCAAAGATAGTTGTCACTTGCAAAAACCAGCAAGAAATGTAAGAATA 480
Query 487 AGATCACAGAGGCTGCTGAGAGCGTTGGCCTCCCGACTTTTGTTGTAGCTGATGCTGGAA 546
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 481 AGATCACAGAGGCGGCTGAGAGCGTTGGCCTCCCGACTTTTGTTGTAGCTGATGCTGGCA 540
Query 547 GAACTGAGGTTGCGGCTGGATCAAGAACAGTTCTTGCAGTTGGACCTGGACCAAAGGAGT 606
|||| |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 541 GAACAGAGGTTGCGGCTGGATCAAGAACAGTTCTTGCAGTTGGGCCTCGACCAAAGGAGT 600
Query 607 TGGTTGATTCCATAACTGGTAGGCTGGCTTTACTCTGATTCAGGAGCTTTTTCTTGGCGT 666
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TGGTTGATTCCATAACTGGTAGGCTGGCTTTACTCTGATTCAGGAGCTTTTTCTTGGCGT 660
Query 667 AGTTCCTCTGGGATTTTGATTTCTCCAGGATTAAGGTTAATTCAGGCAAGGCAA-T-GT- 723
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 661 AGTTCCTCTGGGATTTTGATTTCTCCAGGATTAAGGTTAATTCAGGCAAGGCATGTTGTG 720
Query 724 T-GTTGTGTAATGATTATTCAAGGTACATGTTAGATTTGTTGTTGGTTAATT 774
| ||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 721 TTGTTGTGTAATGATTAAACAAGGTACATGTTAGATTTGTTGTTGGTTAATT 772
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32061373197
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5