BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G32910.1
Length=2465
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491404 jgi|Araly1|491404|fgenesh2_kg.7__837__AT4G32910.1 3489 0.0
> Ahg491404 jgi|Araly1|491404|fgenesh2_kg.7__837__AT4G32910.1
Length=2260
Score = 3489 bits (1889), Expect = 0.0
Identities = 2126/2242 (95%), Gaps = 9/2242 (0%)
Strand=Plus/Plus
Query 30 TTCAGTTCTTCTCCCTCCGGAAAAGCT-ACAACCCCAATCTAAAACCCTAACGGCCATTT 88
||||| ||||||||||||||||||||| | ||||||||||||||||||||||| ||||||
Sbjct 1 TTCAGGTCTTCTCCCTCCGGAAAAGCTGA-AACCCCAATCTAAAACCCTAACGCCCATTT 59
Query 89 CTACCATCGGAGCTCCGAAAATGCCGGGTATGTCTTCGGAATCTGGCGGTGGAGAATTGG 148
|||| |||||||||||| ||||||||||||| |||||||||| ||||||||||||||||
Sbjct 60 CTACAATCGGAGCTCCG-AAATGCCGGGTATAACTTCGGAATCCGGCGGTGGAGAATTGG 118
Query 149 TTCTGTTTTCGACCAAGGAAAAAACTCCGGTGTTGTATCCTCTAAGCTATGGCCTCAAGT 208
|| ||| |||| | ||||||||| |||||||||||||||||||||||| ||| | ||||
Sbjct 119 TTTTGTCTTCGGCGAAGGAAAAAGTTCCGGTGTTGTATCCTCTAAGCTACGGCTTGAAGT 178
Query 209 CTCCGGTTCACAGGCTCTCCATCTCCTGGGGTTGCGGAAACAACCTACGCGTCACGGTTT 268
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 CTCCGGTTCATAGGCTCTCCATCTCCTGGGGTTGCGGAAACAACCTACGCGTCACGGTTT 238
Query 269 TAAGGAATCCAGAGTTACGCGATGATGACGACGGAGAAGTTGGTGGTAAGGTCGTAAACG 328
|| | || || ||||||||||||||| | || ||||||| ||||||||| ||||||||||
Sbjct 239 TACGAAACCCGGAGTTACGCGATGATAATGATGGAGAAGCTGGTGGTAAAGTCGTAAACG 298
Query 329 TTAGGCTTAGCGGCGAGGATGGCGAAATCAGTGACCCACAGTGGCGAAGGATCGCTTATG 388
||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct 299 TTAGGCTTAGCGGCGAGGATGGCGAAATCAGTGACGCACAGTGGCGAAGGATGGCTTATG 358
Query 389 GATCGGTATCTCCGTTCGCGCTTTTGCAGAGCAGAAGAAACTCAATTTCCAGTTTGTCTA 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 GATCGGTATCTCCGTTCGCGCTTTTGCAGAGCAGAAGAAACTCAATTTCCAGTTTGTCTA 418
Query 449 AGATGGATATGAGTTCCTCTCTGTATCAGACTGCGTGGTGGGAGTACGTAATGGAATACA 508
||||||||||| |||||||| |||| ||||||||||||||||| ||||||||||||||||
Sbjct 419 AGATGGATATGGGTTCCTCTTTGTACCAGACTGCGTGGTGGGAATACGTAATGGAATACA 478
Query 509 GCAGAGATATTAAATCTCTCCTTAGTAATACAATATCTT-TGCCCGCTCCTTTGATTGAA 567
||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 479 GCAGAGATATTAAATCTCTCCTTAGTAATACAATATCTTCT-CCCGCTCCTTTGATTGAA 537
Query 568 GACCCGAGATCAGTTATAAAGAATGCTGAGGAACCAACTTCTTTAAAGGCTGCGTGGGAG 627
||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 538 GACCCAAGATCAGTTATAACGAATGCTGAGGAACCAACTTCTTTAAAGGCTGCGTGGGAG 597
Query 628 TTGATGGAATTATTTTATGCAGATAAGACATGTCTGTCTTGGTTGCCAGAACGGCTCGTT 687
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 TTGATGGAATTGTTTTATGCAGATAAGACATGTCTGTCTTGGTTGCCAGAACGGCTCGTC 657
Query 688 GATTGGTTATCTGAATACGATATACTCCTTTCTAGCTCACATCCAACAATCTACTCAAAG 747
|||||| |||||| ||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 658 GATTGGCTATCTGTATACGATATACTCCTCTCAAGCTCACATCCAACAATCTACTCAAAG 717
Query 748 CTCCAGGATTTCCAAAAGGAACTTGTTGGCCTGCAGGCCATCGAGGATGATCCAAGATAC 807
|| |||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 718 CTTGAGGATTTCCAAAAGGAACTTGTTGGCCTACAGGCCATCGAGGATGATCCTAGATAC 777
Query 808 TGGGAAGTGATGGCTTCTGCTTTATCAGTTGGTTGGCTAGAAATAGTGGTGAAGTTGTTA 867
|||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 778 TGGGGAGTGATGGCATCTGCTTTATCAGTCGGTTGGCTAGAAATAGTGGTGAAGTTGTTA 837
Query 868 CACCTACATGGTTCTTATCAACTAGACCAGCTGGGACATCGTGAGACAGAAAATGGTTTG 927
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 838 CACTTACATGGTTCTTATCAACTAGACCAGCTGGGACATCGTGAGACAGAAAATGGTCTG 897
Query 928 GTAGAAGCGGTTGCTGTTCTCATTTCAAAAATGCCACGAATGCGGCCACAACTAGAAGAT 987
|||||||| |||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 898 GTAGAAGCCCTTGCTGTTCTCATTTCAAAAATGCCACGAATGCGTCCAAAACTAGAAGAT 957
Query 988 GGGAAATTTGGTGAATGCTCTGCAGCAAAGCCTGACTTTATGAAGACACGAGAAAGATGG 1047
||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 958 GGGAAGTTTGGTGAATGCTATGCAGCAAAGCCTGACTTTATGAAGACACGAGAAAGATGG 1017
Query 1048 CAGTCTCAGATAACTAAACTAGAGTGCAGTGCCTTCTGGGTTCAATGTGCTCACCATCAG 1107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 CAGTCTCAGATAACTAAACTAGAGTGCAGTGCCTTCTGGGTTCAATGTGCTCACCATCAG 1077
Query 1108 ACCCGTGAGGGCTTGAGAAATATGTTGAAGATCATGATAGGAAATGCTGATTGCCTCAGA 1167
||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 1078 ACCCGCGAGGGCTTGAGAAATATGTTGAAGATCATGATGGGAAATGCTGATTGCCTCACA 1137
Query 1168 GCTGCGACATGTAACTGGATGGAGCTTTTTGTTTCACATCTTCTTTATCTCAGGCCATTT 1227
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 GCTGCGACATGTAATTGGATGGAGCTTTTTGTTTCACATCTTCTTTATCTCAGGCCATTC 1197
Query 1228 ACGAAGGGATTAGATGGCATGCATAGCCTAGCCCAGAAGTGTGTTCAGTCAAAGCCA-GT 1286
||||||||||||||| |||||||||| || |||||||| |||||||||||||||||| ||
Sbjct 1198 ACGAAGGGATTAGATAGCATGCATAGTCTCGCCCAGAAATGTGTTCAGTCAAAGCCATGT 1257
Query 1287 TAACACTTCCCATAAGCTTCTAAGACTGCTTATTGGAATTCTTGGAGAAAATACTGAGGT 1346
||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1258 -AACACTTTCCATAAGCTCCTAAGACTGCTTATTGGAATTCTTGGAGAAAATACTGAGGT 1316
Query 1347 TGTTCTGGCAGAGTGTTCCAAAGAATTTGGCTCCTGGATGGTTGCACATGCCATGGAATT 1406
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1317 TGTTCTGGCAGAGTGTTCCAAAGAGTTTGGCTCCTGGATGGTTGCACATGCCATGGAATT 1376
Query 1407 ATTGACAGCTGGAAGCGAAGAAGGAGAAGTTCTTGTACATGAGGAACAGCGTAAGTTGGG 1466
|||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||
Sbjct 1377 ATTGACAGCTGGAAGCGATGAAGGAGAAGTTCTTGTACATGAGGAGCAGCGAAAGTTGGG 1436
Query 1467 TGGAATTAACATGGAAGAGCTCCATAGACTTGTTTATGCTCAAGTTCTTTCTTCTCATGC 1526
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1437 TGGAATCAACATGGAAGAGCTCCACAGACTTGTTTATGCTCAAGTTCTTTCTTCTCATGC 1496
Query 1527 TTTGACTTGGCAGATAGCTCCTATTTATCTAGCATCGTGCGAGAAACAGGGATTAGGCTT 1586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1497 TTTGACTTGGCAGATAGCTCCTATTTATCTAGCATCGTGCGAGAAACAGGGATTAGGCTT 1556
Query 1587 ATTAGAGCTGTTGTTCTACAGGCAGCCTGTTCAAGAGAATCAGATGCTTATTAAGAGCCT 1646
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1557 ATTAGAGTTGTTGTTCTACAGGCAGCCTGTTCAAGAGAATCAGTTGCTTATTAAGAGCCT 1616
Query 1647 AGAGATTTGCCGTCTCTATGAACTCAGTAATGTCAGTGCTAAACTAATGAAGATTTCTGG 1706
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1617 AGAGATTTGCCGTCTATATGAACTCAGTAATGTCAGTGCTAAACTTATGAAGATTTCTGG 1676
Query 1707 AGTGCATCATTGGAAACATGGGAGGAAAGGCTCAGGGATTTTCTGGCTCCAGCAAGCTCG 1766
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1677 AGTACATCATTGGAAACATGGGAGGAAAGGCTCTGGGATTTTCTGGCTCCAGCAAGCTCG 1736
Query 1767 GGACGAAAATTGTCTCAGCGTGATTGCTCAACAGCTGTTTGATTCTGTTGGAAAATCATT 1826
||| ||| |||||||| ||||||||||||||||||||||||| ||||| ||||| |||||
Sbjct 1737 GGATGAACATTGTCTCGGCGTGATTGCTCAACAGCTGTTTGACTCTGTGGGAAAGTCATT 1796
Query 1827 GTCTGATGAAAGTCTCAAGCAATGGGAAGGCCTAGTCGAGTTGCTGGGTTCGGAATCACA 1886
|||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 1797 GTCTGATGAAAGCCTCAAACAATGGGAAGGCCTAGTCGAGTTACTGGGTTCGGAATCACA 1856
Query 1887 GATCTCTGGTGGTCTCGATTTTCTTCACAAGTATAGAGATTTCAAGAGATCGCTGAAGGT 1946
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1857 GATCTCTGGTGGTCTCGATTTTCTTCACAAGTATAGAGATTTCAAGAGATCGCTGAAGCT 1916
Query 1947 AGTCCATGATGGAAAAACTATAGATGCAGCTCATGAAGCCGTAGAGAGACTTGTATCGCT 2006
||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct 1917 AGTCCATGATGGAAAAACTATAGATGCAGCTTATGAAGCCGTAGAGAGACTTGTATGGCT 1976
Query 2007 AATGAAGAGCCCTTCTACTCCTCAACGCTTCTGGCTTCCTCTTCTGCATGATTCATTGAA 2066
|||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1977 AATGAAGAGCGCTTCTACTCCTCAACGCTTTTGGCTTCCTCTTCTGCATGATTCATTGAA 2036
Query 2067 GCTGTTGAATTGGCCCGAACGTTCGCTGTTGAATGTAACACAGACC-AACCTGATGTTGA 2125
|||||| |||||||| |||||||||||| ||||||| |||||||| ||| |||||||||
Sbjct 2037 GCTGTTAAATTGGCCAGAACGTTCGCTGATGAATGTTGCACAGACCGAAC-TGATGTTGA 2095
Query 2126 ACAAATTACAAGAGCTATCAATAGCAAGGTTAAGACCAGGCTTCATAGAATCTGAGTTGT 2185
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 2096 ACAAATTACAAGAGCTATCAATTGCAAGGTTAAGACCAGGCTTCATAGAATCTGATTTGT 2155
Query 2186 CTGCTCAAGCTGTGGGTTCAGTGAGACTTGCTCTAGCAACAAATCTCGGACGTGCTTTTC 2245
||||||||||||||||||||||||||||||||| || || ||||||||| | |||||||
Sbjct 2156 GTGCTCAAGCTGTGGGTTCAGTGAGACTTGCTCTGGCCACCAATCTCGGAAGAGCTTTTC 2215
Query 2246 TCGAAGAATGTTAGCGCGGGTT 2267
| |||||||||||| || ||||
Sbjct 2216 TGGAAGAATGTTAGTGCCGGTT 2237
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92902107555
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5