BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G32915.1
Length=745
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491403 jgi|Araly1|491403|fgenesh2_kg.7__836__AT4G32915.1 1003 0.0
Ahg944656 jgi|Araly1|944656|scaffold_700885.1 313 1e-84
> Ahg491403 jgi|Araly1|491403|fgenesh2_kg.7__836__AT4G32915.1
Length=695
Score = 1003 bits (543), Expect = 0.0
Identities = 610/641 (95%), Gaps = 10/641 (2%)
Strand=Plus/Plus
Query 26 AGCCATGGCGACCAGAGCTTTGCTCGCCGTTATATATGCGTCTCCGAATCGCTGCTACAT 85
|||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |||
Sbjct 1 AGCCATGGCGACCAGAGCTTTGCTTGCCGTTATATCTGCGTCTCCGAATCGCTGCTTCAT 60
Query 86 CTCTCCGAGCAGGATCAAAATCCAATCTTTAACTTGTTCTTCTTCAAGTCATTATTACC- 144
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 61 CTCTCCGAGCAGGATCAAAATCCAATCTTTAACTTCCTCTTCTTCAAGTCATTATTACCA 120
Query 145 AA-A-GACAGAGTAGAAAAAACCACAGAATAGCTCGAAGTTACTCGTCTGACTCGGATTC 202
|| | ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 121 AAGACGACAGAGTAGAAAAATCCACAGAATAGCTCCAAGTTACTCGTCTGACTCGGATTC 180
Query 203 CTCCGTTCTTCAGCCGCCGGATGTGGCCCGTCTTGCTCAGACAGCTCGAATCTCTCTAAC 262
||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||
Sbjct 181 CTCCGTTCTTCAGCCGCCGGACGTGTCCCGTCTAGCTCAGACAGCTCGAATCTCTCTAAC 240
Query 263 TCCGG-CGGAGATAGAGGAATGTGAAACTAAAATTCGTCGAGTCATCGACTGGTTTGGGC 321
||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TCCGGAC-GAGATAGAGGAATGTGAAACTAAAATTCGTCGAGTCATCGACTGGTTTGGGC 299
Query 322 AGCTTCAACAAGTTGATGTTAACAGTGTGGAGCCAGCTATTAGAGCAGAAATGGATGGTG 381
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 300 AGCTTCAACAAGTTGATGTTAACAGTGTGGAGCCAGCTATTAGAGCAGAAATGGATGGCG 359
Query 382 GAAATTTGCGAGAGGATGCTCCAGAAACATTTGACAACAGGGACAGTATAAGAGCTTCCA 441
|| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 360 GAGATTTGCGAGAGGATGCTCCAGAAACATTTGAGAACAGGGACAGTATAAGAGCTTCCA 419
Query 442 TTCCAAGCTTTGAGGACGCATATCTAAAAGTCCCTAAAATACTAAACAAAGAGTGACTTT 501
||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct 420 TTCCAAGCTTTGAGGACGCATATTTAAAAGTCCCTAAAATACTTAACAAAGAGTGACTTT 479
Query 502 TTCAGCTTCTTGGAATTGTTTGGCTGAAGAGATTCATTCTCAGATCCGGTTCTTGTTCCA 561
|||||||||||||| ||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 480 TTCAGCTTCTTGGATTTGTTTGCCTGGAGAGATTCATTCTCAGATCCGGTTCTTGTTCCA 539
Query 562 GCATCTCTATGTTTTCTAAAATTGGTTAGCAGAAAACAAAATTGCCTCAAAA-TTGTTAA 620
|||||| ||||||||||||||||||||| |||||||||||||||||||||| |||| ||
Sbjct 540 GCATCT--ATGTTTTCTAAAATTGGTTAGGAGAAAACAAAATTGCCTCAAAAATTGTGAA 597
Query 621 GTCTCACGTAGGCTATTA-T-TCTACAACATTTTGTTCACA 659
|||||||||||||||| | | ||||||||||||||||||||
Sbjct 598 GTCTCACGTAGGCTATCACTCTCTACAACATTTTGTTCACA 638
Score = 56.5 bits (30), Expect = 3e-07
Identities = 32/33 (97%), Gaps = 0/33 (0%)
Strand=Plus/Plus
Query 712 AGTGTCTGTGATGGGCCGTTTTGATCCCAGCCT 744
|||||||||||||||||||||||||||| ||||
Sbjct 663 AGTGTCTGTGATGGGCCGTTTTGATCCCGGCCT 695
> Ahg944656 jgi|Araly1|944656|scaffold_700885.1
Length=296
Score = 313 bits (169), Expect = 1e-84
Identities = 192/202 (95%), Gaps = 6/202 (3%)
Strand=Plus/Plus
Query 26 AGCCATGGCGACCAGAGCTTTGCTCGCCGTTATATATGCGTCTCCGAATCGCTGCTACAT 85
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 20 AGCCATGGCGACCAGAGCTTTGCTCGCCGTTATATCTGCGTCTCCGAATCGCTGCTTCAT 79
Query 86 CTCTCCGAGCAGGATCAAAATCCAATCTTTAACTTGTTCTTCTTCAAGTCATTATTACCA 145
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 80 CTCTCCGAGCAGGATCAAAATCCAATCTTTAA------CTTCTTCAAGTCATTATTACCA 133
Query 146 AAGACAGAGTAGAAAAAACCACAGAATAGCTCGAAGTTACTCGTCTGACTCGGATTCCTC 205
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 134 AAGACAGAGTAGAAAAATCCACAGAATAGCTCGAAGTTACTCGTCTGACTCGGATTCCTC 193
Query 206 CGTTCTTCAGCCGCCGGATGTG 227
|||||||||||||||||| |||
Sbjct 194 CGTTCTTCAGCCGCCGGACGTG 215
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27448500240
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5