BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G32950.1
Length=981
Score E
Sequences producing significant alignments: (Bits) Value
Ahg328437 jgi|Araly1|328437|fgenesh1_pm.C_scaffold_7000664 1458 0.0
> Ahg328437 jgi|Araly1|328437|fgenesh1_pm.C_scaffold_7000664
Length=969
Score = 1458 bits (789), Expect = 0.0
Identities = 920/982 (94%), Gaps = 14/982 (1%)
Strand=Plus/Plus
Query 1 ATGGGATTTTGTTTTTGTTTATCCTCAGGAGGATCAACAGAT-AAAAGTCAGATTTATGA 59
|||||||||||||| ||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 1 ATGGGATTTTGTTTGTGTTTATCCTCAGGAGGATCAACAGATCGAAA-TCAGATTTATGA 59
Query 60 GATAACTGATTATGGACAAGAAAATGCAGTTTTATACTCTGACCACCATGTTGTTCCTCA 119
||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 60 GATAACTGATTATGGACAAGAAAATGCAGTTTTATACTCTG------A---TGTTCCTCA 110
Query 120 AAACTTGGGCTCTGTCTCTTCTTTAGCCGGAGGCAAGGGCTTGAACCAAGATGCTGCCAT 179
| |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 111 AGACTTTGGCTCTGTCTCTTCTTTAGCCGGAGGAAAGGGCTTGAACCAAGATGCTGCCAT 170
Query 180 TCTCCACCTGGGATATGGAACAGAAGAAGGAGCGTTATGTGGAGTGTTTGATGGGCATGG 239
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 171 TCTCCACCTGGGATATGGAACACAAGAAGGAGCGTTATGTGGAGTGTTTGATGGGCATGG 230
Query 240 ACCGAGAGGTGCGTTTGTGAGCAAGAACGTAAGGAACCAATTGCCATCTATACTCTTAGG 299
||||||||||| || || ||||||| ||||||||||||||||||||||||||| ||| |
Sbjct 231 ACCGAGAGGTGAATTCGTAAGCAAGATCGTAAGGAACCAATTGCCATCTATACTATTAAG 290
Query 300 CCACATGAATAATCATTCAGTGACTCGAGACTGGAAACTCATATGCGAAACATCGTGTTT 359
|| |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 291 TCATATGAATAATCATTCAGTGACTCGAGATTGGAAACTCATTTGCGAAACATCGTGTTT 350
Query 360 GGAGATGGACAAAAGGATTCTTAAAGTTAAAAAGATTCATGATTGCTCTGCTTCTGGAAC 419
||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 351 GGAGATGGACAAAAGAATTCTTAAAGTTAAAAAGATTCATGATTGCTCTTCTTCTGGAAC 410
Query 420 TACTGCTGTTCTCGCCGTTAAACATGGAAATCAAGTGATGGTGGCAAATCTTGGGGATTC 479
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 411 TACTGCTGTTCTCGCCGTTAAACATGGAAACCAAGTGATGGTGGCAAATCTTGGAGATTC 470
Query 480 AAGGGCTGTCATGATTGGAACAAGTGAGGATGGAGAAACCAAGGTGGCTCAGTTGACCAA 539
||||||||| |||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct 471 AAGGGCTGTGATGATTGGAACAAGTGAGAATGGAGAAACCAAGGTGGTTCAGTTGACCAA 530
Query 540 TGACCTGAAGCCAAGTGTCCCAAGCGAAGCGGAGAGAATAAGGAAAAGAAACGGAAGGGT 599
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 531 TGACCTGAAGCCAAGTGTCCCAAGCGAAGCGGAGAGAATAAGGAAACGAAACGGAAGGGT 590
Query 600 GTTAGCTTTGGAGTCGGAACCTCACATTCTGAGAGTTTGGCTTCCAACCGAAAACCGACC 659
|| ||||| ||||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct 591 ATTGGCTTTAGAGTCGGAACCTCACCTTCTAAGAGTTTGGCTTCCAACCGAAAACCGACC 650
Query 660 AGGCCTAGCCATGTCGCGGGCTTTTGGTGATTTCCTCCTTAAAAGCTACGGTGTCATTGC 719
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 651 AGGCCTAGCCATGTCCCGGGCTTTTGGTGATTTCCTCCTTAAAAGCTACGGTGTCATTGC 710
Query 720 GACTCCGCAAGTCTCTACGCATCAAATCACTTCCAGCGACCAATTTCTACTCCTTGCTTC 779
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 711 GACTCCACAAGTCTCTACGCATCAAATCACTTCCAGCGACCAATTTCTACTGCTTGCTTC 770
Query 780 AGACGGGGTGTGGGATGTACTTAGTAACGAGGAAGTGGCAACGGTGGTGATGAAGTCAGC 839
|| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 771 TGATGGGGTGTGGGATGTACTTAGTAACGAAGAAGTGGCAACGGTGGTGATGAAATCAGA 830
Query 840 AAGTGAGGCAGGAGCGGCCAACGAGGTGGCAGAGGCGGCGACTAATGCGTGGATCCAGAA 899
|||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 831 AAGTGAAGCAGGAGCGGCCAACGCGGTGGCAGAGGCGGCGACTAATGCGTGGATCCAGAA 890
Query 900 ATTTCCAACGGTTAAGATTGACGATATCTCTGTCGTGTGTCTCTCTCTCAACAAGAAGCA 959
|| ||||||||||||| |||| ||||||||||||||||||||| |||||||| | ||| |
Sbjct 891 ATATCCAACGGTTAAGGTTGATGATATCTCTGTCGTGTGTCTCCCTCTCAACTACAAG-A 949
Query 960 TAATCCACAGCCACAAATATGA 981
||||||||||||||||||
Sbjct 950 GG--CCACAGCCACAAATATGA 969
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36445508652
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5