BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G32960.1
Length=1001
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491398 jgi|Araly1|491398|fgenesh2_kg.7__831__AT4G32960.1 1467 0.0
> Ahg491398 jgi|Araly1|491398|fgenesh2_kg.7__831__AT4G32960.1
Length=939
Score = 1467 bits (794), Expect = 0.0
Identities = 894/942 (95%), Gaps = 7/942 (1%)
Strand=Plus/Plus
Query 27 ACATCGGCGGCGAATGGAGGAAGAGAGAGTGGCCGTGACCGGAGTAGGAACGACTCGATA 86
|||||| ||||||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct 2 ACATCGACGGCGAATGGAGGAAGACAGAGTGGCCGTGACCGGAGTAGGAGCGACTCGATA 61
Query 87 CGCGCTTAAACCGGGGCGTATAAAAAGCGAGGACATACTCATCTGTATCGATGTAGATGC 146
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||
Sbjct 62 CGCGCTTAAACCGGGGCGTATAAAAAGCGAAGACATACTCATCTGCATCGATGTAGACGC 121
Query 147 AGAATCGATGGTGGAGATGAAGACCACTGGAACTAATGGTAGGCCTTTGATCAGGATGGA 206
|||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 122 GGAATCGATGGTGGAGATGAAGACCACTGGAACAAACGGTAGGCCTTTGATCAGGATGGA 181
Query 207 GTGCGTCAAGCAAGCCATTATTCTCTTCATTCACAATAAGCTGTCCATTAATCCTGATCA 266
|||||||||||||||||||||||||||||| ||||| ||||| ||||||||||| |||||
Sbjct 182 GTGCGTCAAGCAAGCCATTATTCTCTTCATCCACAACAAGCTCTCCATTAATCCCGATCA 241
Query 267 TCGCTTTGCTTTCGCTACGCTCGCCAAATCAGCCGCTTGGCTTAAAAAGGAGTTCACAAG 326
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||
Sbjct 242 TCGCTTTGCTTTCGCTACTCTCGCCAAATCAGCCGCCTGGCTTAAAAAGGAGTTCACCAG 301
Query 327 TGATGCTGAATCTGCTGTTGCTTCCCTTAGAGGATTGTCAGGTAATAAATCCTCTAGTCG 386
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 302 CGATGCTGAATCTTCTGTTGCTTCCCTTAGAGGATTGTCACCTAATAAATCCTCTAGTCG 361
Query 387 AGCGGATCTCACACTTCTCTTCCGAGCAGCAGCTCAGGAAGCCAAAGTTTCCAGAGCACA 446
|||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||
Sbjct 362 AGCGGATCTCACACTTCTCTTCCGGGCTGCAGCTCAGGAAGCCAAAGTTTCTAGAGCACA 421
Query 447 GAACCGAATTTTCAGGGTGATTCTCATATACTGTAGGTCATCTATGAGACCAACCCATGA 506
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 422 TAACCGAATTTTCAGGGTGATTCTCATATACTGCAGGTCATCTATGAGACCAACCCATGA 481
Query 507 GTGGCCCTTAAACCAGAAGCTCTTCACGTTGGATGTTATGTACCTGCACGACAAGCCAAG 566
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 482 GTGGACCTTAAACCAGAAGCTCTTCACGTTGGATGTTATGTACCTGCACGACAAGCCAAG 541
Query 567 TCCTGATAATTGTCCACAAGATGTGTATGACTCTCTTGTCGATGCAGTAGAACATGTTTC 626
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 542 TCCTGATAATTGTCCTCAAGATGTGTATGACTCTCTTGTCGATGCAGTAGAACATGTTTC 601
Query 627 AGAGTATGAAGGTTACATATTTGAGAGCGGTCAAGGGCTTGCACGGTCTGTTTTCAAGCC 686
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 602 AGAGTATGAAGGTTACATATTTGAGAGTGGCCAAGGGCTTGCACGGTCTGTTTTCAAGCC 661
Query 687 AATGTCAATGCTGTTAACTCATCCTCAACAAAGATGTGCTCAAGATGATCTTGACATCCC 746
||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 662 CATGTCAATGTTGTTATCTCATCCTCAACAAAGATGTGCTCAAGATGATCTTGACATCCC 721
Query 747 CATGTCTCTTGCAAAGAAAGTGCCTGTGACTGAGGCGGCAAGTGCTGTAGATCCTCACAA 806
|| ||||||||||||||| |||||||||||||||||||||| |||| |||||| ||||||
Sbjct 722 CAGGTCTCTTGCAAAGAAGGTGCCTGTGACTGAGGCGGCAAATGCTCTAGATCATCACAA 781
Query 807 TGGGAACAATATTCAGATCATAAACTAATGAAA-CACttttttttttttCTT--GTATCT 863
||||||||| | ||||||||||||||||||||| ||||||||||||||| || ||||||
Sbjct 782 TGGGAACAACAATCAGATCATAAACTAATGAAAACACTTTTTTTTTTTTTTTATGTATCT 841
Query 864 TTTGGTCATGACATGGTTGTGAGTTTCGCATGTGaaaaaaaTACTCAAAACCTGTAGTGA 923
|||||||||||||||||||| |||||||||||||||||||||||||||||| | |||||
Sbjct 842 TTTGGTCATGACATGGTTGTAAGTTTCGCATGTGAAAAAAATACTCAAAAC-T--AGTGA 898
Query 924 CAACTTGTTCTAGATCCATCAAGTAAGAAACTCAAATGTCCA 965
||||||||||||||||||| ||||||||||||||||||||||
Sbjct 899 CAACTTGTTCTAGATCCAT-AAGTAAGAAACTCAAATGTCCA 939
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37207966992
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5