BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G32970.1
Length=2280
Score E
Sequences producing significant alignments: (Bits) Value
Ahg944648 jgi|Araly1|944648|scaffold_700877.1 1378 0.0
Ahg491547 jgi|Araly1|491547|fgenesh2_kg.7__980__AT4G31880.1 193 6e-48
> Ahg944648 jgi|Araly1|944648|scaffold_700877.1
Length=2281
Score = 1378 bits (746), Expect = 0.0
Identities = 899/973 (92%), Gaps = 9/973 (1%)
Strand=Plus/Plus
Query 18 GACGGAGCCTTTTACGGCGAATGGAGGAAGACAGAGCCACCATGACCGGAGCTGTAGCCA 77
|||||| ||||||||||||||||||||||| | ||| ||||||||||||||||||| |
Sbjct 2 GACGGA-ACTTTTACGGCGAATGGAGGAAGAAAAAGCGGCCATGACCGGAGCTGTAGCGA 60
Query 78 CTCGAGACTCGGTGGAACCCAGCGAAGACATACTCATATGCGTCGATGTTGATGCGGAAT 137
| |||| | || ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CCCGAGTCACGATGGAACCTAGCGAAGACATACTCATATGCGTCGATGTTGATGCGGAAT 120
Query 138 CGACGGTGGAGATGAAGACCACTGGAACTAACGGTAAGCCTTTGAACAGGCTCGAGTGCC 197
|||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||
Sbjct 121 CGACGGTGGAGATGAAGACCACTGGAACTAACGGTAAGCCACTGAACAGACTGGAGTGCG 180
Query 198 TCAAGCTAGCCATTACTCGCTTTATCCACGACAAGCTCTCCAGAAATTCCGATCATCGCT 257
||||||||||||||||||||||||| |||||||||||| |||||||||||||||| || |
Sbjct 181 TCAAGCTAGCCATTACTCGCTTTATTCACGACAAGCTCGCCAGAAATTCCGATCACCGTT 240
Query 258 TTGCTTTCGCTACCCTCTCCCAGTCAGCCGCTTGGCTTAAA-AAGGAATTCTCCAACGAT 316
|||||||||||||||||||| | ||||||||||||| ||| ||||||||| ||| |||
Sbjct 241 TTGCTTTCGCTACCCTCTCCAAATCAGCCGCTTGGCC-AAACAAGGAATTCACCAGTGAT 299
Query 317 GCTAAATCTGCTGCTGCTTCTTTAAGAGAAATGTCAGCTACTAGAT-CCTCTGGTCCAGC 375
||| ||||||||||||||||| |||| ||||| |||||||||| || |||||||||||||
Sbjct 300 GCTGAATCTGCTGCTGCTTCTCTAAGGGAAATCTCAGCTACTA-ATTCCTCTGGTCCAGC 358
Query 376 GGATCTCACATTTCTGTTCCAGGAAGCGGCTCAGGAAGCCAAAACTTCCAGAGCACAAAA 435
|||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 359 GGATCTCACACTTCTGTTCCAGGAAGCGGCTCAGGGAGCCAAAACTTCCAGAGCACAAAA 418
Query 436 TCGAATTTTGAGAGTGATTCTCATGTACTGCAGGTCATCCGTGAGACCAACCCATGATTG 495
||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 419 CCGAATCTTGAGAGTGATTCTCATATACTGCAGGTCATCCGTGAGACCAACCCATGATTG 478
Query 496 GCCTATAAACCAGAAGCTCTTCACATTGGATGTTATGTACCTGCACGACAAGTCGGGTCC 555
||| ||||| |||||||| ||||||||||||||||||||||||||||||||||| | |||
Sbjct 479 GCCCATAAATCAGAAGCTTTTCACATTGGATGTTATGTACCTGCACGACAAGTCAGCTCC 538
Query 556 TGATAATTGTACTCACGATGTGTATGACTCTCTTGTTGATGCTATAGAGCGTGTTTCGGA 615
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 539 TGATAATTGTACTCACGATGTGTATGACTCTCTTGTTGATGCTTTAGAGCGTGTTTCGGA 598
Query 616 GTATGAAGGTTACATCTTTGAGGGCAGTCATGGGCTTTCACAGTCTGTTTTCAGGCGTAT 675
||||||||| |||||||||||| ||||||| |||||| | ||||||||||||||||||||
Sbjct 599 GTATGAAGGCTACATCTTTGAGAGCAGTCACGGGCTTGCGCAGTCTGTTTTCAGGCGTAT 658
Query 676 GTCAACGTTGTTATCACATCCTCCTCAAAGATGTGCTCAAGTTGATCTCCCCAAGCC-TC 734
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 659 GTCAACGTTGTTATCACATCCTCCTCAAAGATGTGCTCAAGTTGATCTCCCCAAGCCCTC 718
Query 735 CTGCAAAGAAGCCAGCTGTTTCCTGTGATAAATC-AGCCTCAGATTCAACGAAAGGAGCG 793
|||||||||||||||||||||||||||| | || | |||| | ||||| |||||||||
Sbjct 719 -TGCAAAGAAGCCAGCTGTTTCCTGTGATCAGTCCA-CCTCGGGTTCAAAGAAAGGAGCA 776
Query 794 AAGCAACCGTTAGaaaaaaaaCCTAAGACAAACACAAAGAGAATACACAGCCTAGGCAAA 853
||||||||||||||||||| |||| ||||||||||||||| |||||||||||||||||
Sbjct 777 AAGCAACCGTTAGAAAAAACTTCTAATACAAACACAAAGAGAGTACACAGCCTAGGCAAA 836
Query 854 GAGAAAACATCTGATTTCAAAAAGTATGATGAAAAGATAGTTGGGTCGAGGGTTAAAATC 913
|||||| |||||||| ||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 837 GAGAAAGCATCTGATCTCAAAAACTATGATGAAAATTTAGTTGGGTCGAGGGTTAAAATC 896
Query 914 TGGTGGCCGTTGGATCGCGCGTATTATGAAGCTGTGGTCATTTCATATTGTTCTGCTAAA 973
|||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 897 TGGTGGCCTTTGGATCGCGCGTATTATGAAGCTGTGGTCATTTCATATTATTCTGCTAAA 956
Query 974 GAGAGACATCGGG 986
| |||||||||||
Sbjct 957 GCGAGACATCGGG 969
Score = 597 bits (323), Expect = 1e-169
Identities = 386/417 (93%), Gaps = 2/417 (0%)
Strand=Plus/Plus
Query 1502 AAAATCCTTGAGATGGTTCAACAACCAGTGGCTGAAGAAGAGGATCTTGCAGAAACTAAG 1561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1776 AAAATCCTTGAGATGGTTCAACAACCAGTGGCTGAAGAAGAGGATCTTGCAGAAACTGAG 1835
Query 1562 ACTAAGACATACAAGCGAGCTCGAGTCGAAAGCTCCAGCGTTCATAAAGCTGATGGCGAG 1621
| | ||||| |||||||||| ||||||| ||| |||||| ||| ||||||||||||||||
Sbjct 1836 AGTCAGACACACAAGCGAGCGCGAGTCGGAAGTTCCAGCCTTCGTAAAGCTGATGGCGAG 1895
Query 1622 ATGGAGAAGGAAGCTGCAGAAGGAGAACCCTCTTGCCGGTCCCACAAATCGAGTGCTGAG 1681
||||||||| |||||||||||||||||||||||||||| || || ||||| |||||||||
Sbjct 1896 ATGGAGAAGAAAGCTGCAGAAGGAGAACCCTCTTGCCGTTCTCAAAAATCCAGTGCTGAG 1955
Query 1682 CCCGGAGACTTGCAGC-CTAAGAACCTCCCTGAACCTTGCTCTGTCACACAACAGCTGGC 1740
|||||||||| ||||| | |||||||||||| ||||||||||||||||||||||||||||
Sbjct 1956 CCCGGAGACTCGCAGCGC-AAGAACCTCCCTCAACCTTGCTCTGTCACACAACAGCTGGC 2014
Query 1741 TAAGGTCAAACAGAGCATTTTAGACACTGTAGCCAGTGTAAGACAGTTTCGCTGTGAGCT 1800
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2015 TAAGGTGAAACAGAGCATTTTAGACACTGTAGCCAGTGTAAGACAGTTTCGCTGTGAGCT 2074
Query 1801 GGAAAGAAAGGAACAGAGCATTGCAGACACTTTAAGCATTGTACGACAGTTCCGATCTGA 1860
|| ||||||||||||||||||| ||| ||||| ||||||||||||| |||||| |||||
Sbjct 2075 GGGGAGAAAGGAACAGAGCATTGTAGATACTTTGAGCATTGTACGACTGTTCCGTTCTGA 2134
Query 1861 GATCGAGGAAAAGGAAGATATGCTAGAAGCTTCACTCCTGGAAATCGATGTGTTAGG 1917
||| |||||||||||||| || ||||||||||||||||||||||| || ||||||||
Sbjct 2135 GATTGAGGAAAAGGAAGACATTCTAGAAGCTTCACTCCTGGAAATTGACGTGTTAGG 2191
Score = 499 bits (270), Expect = 3e-140
Identities = 353/390 (91%), Gaps = 17/390 (4%)
Strand=Plus/Plus
Query 985 GGATAAAGAAGCTAATCAAACGGGATGTGATGAAGAAGCCTCCACAATGCCCCAGAAGAA 1044
||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 1055 GGATAAAGAAGCTAATCAAACGGGATGTGTTGAAGAAGCTTCCACAATGCCCCAGAAGAA 1114
Query 1045 GAAAGCTAAGACACGCAAGGAACAGTCAACTAATAAGCAATCAAAGATGCTTTCACCATT 1104
||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1115 GAAAGCTAAGACAAGCAAGGAACAGTCAGTTAATAAGCAATCAAAGATGCTTTCACCATT 1174
Query 1105 TCCACCTAATGTTAAAAAGGAT------G------AT---GAGGTTCCCCAAATATCAAG 1149
||||| | |||||||||||||| | || ||||||||||||||||||||
Sbjct 1175 TCCACTTTATGTTAAAAAGGATGACGAGGTCATACATGGAGAGGTTCCCCAAATATCAAG 1234
Query 1150 GAGGCAGGCAGAACAAGTTCTCAGTAACTGTGCTAGCCAGATTAAAAAGTATCTGACAGA 1209
|||||||||||||||||||||||||| ||||||||||||| | |||||||||||||||||
Sbjct 1235 GAGGCAGGCAGAACAAGTTCTCAGTAGCTGTGCTAGCCAGCTCAAAAAGTATCTGACAGA 1294
Query 1210 AGCAGGGAAATTGTCGAGCGTCTCCTTAGCTAATCCCAGTGATGTAGTGGATTCAATATG 1269
||||| ||||| |||||||||| |||| | ||| | ||||||||||||||||||||||||
Sbjct 1295 AGCAGTGAAATCGTCGAGCGTCCCCTTGGATAAGCACAGTGATGTAGTGGATTCAATATG 1354
Query 1270 TGGAAGG-GCATTTGATGCTTTAAAGCAGGAAGATGTTGTTGCTAATGAAAAAGAAGACC 1328
|| |||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1355 TG-AAGGAGCATTTGATGCTTTAAAGCAGGAAGAAGTTGTTGCTAATGAAAAAGAAGACC 1413
Query 1329 GTCAAGGCCCAAGAGAAGCGGCAGTAAAGG 1358
||||||||||||| ||||||||||| ||||
Sbjct 1414 GTCAAGGCCCAAGGGAAGCGGCAGTGAAGG 1443
Score = 217 bits (117), Expect = 4e-55
Identities = 136/145 (94%), Gaps = 2/145 (1%)
Strand=Plus/Plus
Query 1356 AGGAACAACAGAGAGCAGCAGAAGTTTCTACCCCTGAGCTAACTTGTGTACCTGAGAGGG 1415
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1570 AGGAACAACAGAAAGCAGCAGAAGTTTCTACCCCTGAGCTAACTTGTGTACCTGAGAGGA 1629
Query 1416 GACTGAACCTGGAGCAGTCACTAAGTGTTTGTCCTCATGATTCATCTGTCAAATC-AGCT 1474
||||||||||||||| ||| ||||| |||||||||| |||||||||||||| || ||||
Sbjct 1630 AACTGAACCTGGAGCATTCATTAAGTTTTTGTCCTCACGATTCATCTGTCAA-TCCAGCT 1688
Query 1475 ATTTCTTCTATGAATGAGAATGGAC 1499
|||||||||||||||||||||||||
Sbjct 1689 ATTTCTTCTATGAATGAGAATGGAC 1713
Score = 97.1 bits (52), Expect = 5e-19
Identities = 58/61 (95%), Gaps = 0/61 (0%)
Strand=Plus/Plus
Query 1914 TAGGGGAGAAGATATCGGGAATCAACAAAATCCTCAACTGAAGATCATCAAGTGGATTGC 1973
||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |||||
Sbjct 2221 TAGGGGAGAAGATATCGGGAATCAACAAAATACTCAACTGAAGATCATGAAGTGAATTGC 2280
Query 1974 A 1974
|
Sbjct 2281 A 2281
> Ahg491547 jgi|Araly1|491547|fgenesh2_kg.7__980__AT4G31880.1
Length=2844
Score = 193 bits (104), Expect = 6e-48
Identities = 201/247 (81%), Gaps = 10/247 (4%)
Strand=Plus/Plus
Query 1085 TCAAAGATGCTTTCACCATTTCCACCTAATGTTAAAAAGGATGATGAGGTTCCCCAAATA 1144
||| |||||||||||||||||| || | |||||||||||||||||||| || ||||||||
Sbjct 788 TCAGAGATGCTTTCACCATTTCTACATTATGTTAAAAAGGATGATGAGATTTCCCAAATA 847
Query 1145 TCAAGGAGGCAGGCAGAACAAGTTCTCAGTAACTGTGCTAGCCAGATTAAAAAGTATCTG 1204
||| ||||| ||||||||||||||||||||||||||||||| || | |||| ||||||
Sbjct 848 TCACGGAGGTTGGCAGAACAAGTTCTCAGTAACTGTGCTAGCAAGCTCAAAACTTATCTG 907
Query 1205 ACAGAAGCAGGGAAATTGTCGAGCGTCTCCTT-AGCTAA-TCCCAGTGATGTAGTGGATT 1262
|| ||||||| ||||| || | | ||| |||| || ||| | || | |||||| ||
Sbjct 908 ACTGAAGCAGTGAAATCGTTGGGTGTC-CCTTTAGATAAGTATG-GTAAAATAGTGGCTT 965
Query 1263 CAATATGTGGAAGGG-CATTT-GATGCTTTA-AAGCAGGAAGATGTTGTTGCTAATGAAA 1319
| ||||||| ||||| |||| | |||||| || ||||| | ||| |||| |||||||
Sbjct 966 CGATATGTG-AAGGGACATTCAG-TGCTTTGCAA-CAGGACCAAGTTTTTGCAAATGAAA 1022
Query 1320 AAGAAGA 1326
|||||||
Sbjct 1023 AAGAAGA 1029
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85855412230
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5