BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G32990.1
Length=987
Score E
Sequences producing significant alignments: (Bits) Value
Ahg888801 jgi|Araly1|888801|Al_scaffold_0007_787 1205 0.0
Ahg932816 jgi|Araly1|932816|scaffold_400804.1 627 6e-179
> Ahg888801 jgi|Araly1|888801|Al_scaffold_0007_787
Length=1041
Score = 1205 bits (652), Expect = 0.0
Identities = 746/791 (94%), Gaps = 8/791 (1%)
Strand=Plus/Plus
Query 198 AAGTTTCGATGGCAATACTTGCGTTTGGGAAAATTTTGCTACTGACTCCGAGTCTGTCTC 257
|||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 258 AAGTTTCGATGGCACTACTTGCGTTTGGGATAATTTTGCTACTGACTCCGAGTCTGTCTC 317
Query 258 TGTTTTACGGGGACATGAAAGCGAAGTCAAAAGTGTATCATGGAATGCATCTGGTTCGTT 317
||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 318 CGTTTTACAGGTACATGAAAGCGAAGTCAAAAGTGTATCATGGAATGCATCTGGTTCGTT 377
Query 318 GCTTGCAACTTGTGGTAGAGACAAGTCTGTCTGGATTTGGGAAATACAACCAGAGGAGGA 377
||||||||| ||||||||||||||||||||||||||||||||| ||| ||| | | || |
Sbjct 378 GCTTGCAACATGTGGTAGAGACAAGTCTGTCTGGATTTGGGAAGTACTACC-G-G-AG-A 433
Query 378 CGATGAATTTGATACTATTGCAGTGTTAACTGGTCATTCAGAAGATGTTAAGATGGTCTT 437
||||||||||| | |||||||||||||||||||||||||||||||||||||||| |
Sbjct 434 --ATGAATTTGATTGTGCTGCAGTGTTAACTGGTCATTCAGAAGATGTTAAGATGGTCCT 491
Query 438 GTGGCATCCCACCATGGATGTTTTGTTCTCTTGCAGTTATGATAACACTATCAAGATTTG 497
||||||||| || |||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct 492 GTGGCATCCTACTATGGATGTTTTGTTCTCTTGAAGTTATGATAACACTGTCAAGATTTG 551
Query 498 GTGCTCTGAGGATGAAGATGGTGATTATAATTGTGTACAAACCTTAAGTGAA-CTTAACA 556
||| |||||||||||||||||||||||||||||||| ||||||||| ||||| || ||||
Sbjct 552 GTGGTCTGAGGATGAAGATGGTGATTATAATTGTGTCCAAACCTTAGGTGAATCT-AACA 610
Query 557 ATGGTCATTCTTCTACCGTCTGGAGTATCTCTTTTAATGCTGCAGGGGACAAGATGGTCA 616
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 611 ATGGTCATTCTTCCACCGTCTGGAGTATCTCCTTTAATGCTGCAGGGGACAAGATGGTCA 670
Query 617 CTTGTAGTGATGATCTAGCAGTGAAAATATGGAAGACAGATATTTCAAGGATGCAATCTG 676
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 671 CTTGTAGTGATGATCTAACAGTGAAAATATGGAAGACAGATATTTCAAGGATGCAATCTG 730
Query 677 GTGAAGGATATGTACCCTGGACTCATGTTTGTACACTCTCTGGTTTTCACGATCGTACCA 736
|||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 731 GTGAAGGATATGTACCCTGGACCCATGTTTGTACACTCTCTGCTTTTCACGATCGTACCA 790
Query 737 TATATTCAGTTCATTGGTCAAGGGACGGTGTTATTGCTAGTGGAGCAGGCGATGATACTA 796
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 791 TATATTCAGTTCATTGGTCAAGGGACGGTGTTATTGCTAGCGGAGCAGGCGATGATACTA 850
Query 797 TACAGTTATTTGTGGACAGCGACAGTGACTCTGTTGATGGACCTTCATACAAACTTTTGG 856
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |||
Sbjct 851 TACAGTTATTTGTGGACAGCAACAGTGACTCTGTTGATAGACCTTCATACAAACTCTTGC 910
Query 857 TTAAGAAGGAGAAAGCACATGAAATGGATGTAAATTCGGTCCAATGGGCACCTGATAAGG 916
||||||| |||||||||||||||| |||||||||||| || |||||||||||||||||||
Sbjct 911 TTAAGAAAGAGAAAGCACATGAAAAGGATGTAAATTCAGTGCAATGGGCACCTGATAAGG 970
Query 917 AAAGCCGGTTGCTTGCCTCGGCCAGCGACGATAAAATGGTTAAGATTTGGAAACTTGCCT 976
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 971 AAAGCCGGTTGCTTGCCTCGGCCAGCGACGACAAAATGGTTAAGATTTGGAAGCTTGCCT 1030
Query 977 CGGAGCCATGA 987
||||||||||
Sbjct 1031 GGGAGCCATGA 1041
Score = 283 bits (153), Expect = 1e-75
Identities = 172/181 (95%), Gaps = 2/181 (1%)
Strand=Plus/Plus
Query 1 ATGAAAGTGATGGATAAGAATTTAGGGTTAG-AGGAGGTTCAGAAACTTGAAGGTCACAC 59
|||||| |||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 1 ATGAAATTGATGGATAAGAATTTAGGGTTAGTA-GAGGTTCAGAAACTTGAAGGTCACAC 59
Query 60 TGATCGTGTTTGGAACGTCGCCTGGAATCCCGCCGCTGACGGTGTTATTGCTTCCTGCAG 119
||||||||||||||||||||||||||||||||||| ||||||||| |||| ||||||||
Sbjct 60 CGATCGTGTTTGGAACGTCGCCTGGAATCCCGCCGCCGACGGTGTTCTTGCCTCCTGCAG 119
Query 120 TGCCGATAAGACCGTACGAATCTGGGAGCAGAGTTCTCTTACTCGTTCCTGGACCTGCAA 179
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 120 TGCCGATAAGACCGTACGAATCTGGGAGCAGAGCTCGCTTACTCGTTCCTGGACCTGCAA 179
Query 180 G 180
|
Sbjct 180 G 180
> Ahg932816 jgi|Araly1|932816|scaffold_400804.1
Length=1104
Score = 627 bits (339), Expect = 6e-179
Identities = 594/716 (83%), Gaps = 22/716 (3%)
Strand=Plus/Plus
Query 267 GGGACATGAAAGCGAAGTCAAAAGTGTATCATGGAATGCATCTGGTTCGTTGCTTGCAAC 326
||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 365 GGGACATGAAAACGAAGTCAAAAGTGTATCATGGAATGCATCTGGTTCACACCTTGCAAC 424
Query 327 TTGTGGTAGAGACAAGTCTGTCTGGATTTGGGAAATACAACCAGAGGAGGACGATGAATT 386
||| ||||||| |||||||| |||||||||||| | | || | ||| |||| |
Sbjct 425 ATGTAGTAGAGATAAGTCTGTTTGGATTTGGGAAGT---GCTTGAAG-GGA--ATGAGTA 478
Query 387 TGATACTATTGCAGTGTTAACTGGTCATTCAGAAGATGTTAAGATGG-TCTTGTGGCATC 445
|||| | ||| ||||||||||| ||| || ||||||| ||||||| || |||||||
Sbjct 479 TGATTGTGCTGCGGTGTTAACTGGGCATACACAAGATGTGAAGATGGTTC-AATGGCATC 537
Query 446 CCACCATGGATGTTTTGTTCTCTTGCAGTTATGATAACACTATCAAGATTTGGTGCTCTG 505
| |||||||||||||| || |||||||||||||||||||| || ||| ||||||| ||||
Sbjct 538 CTACCATGGATGTTTTATTTTCTTGCAGTTATGATAACACCATAAAGGTTTGGTGGTCTG 597
Query 506 AGGATGAAGATGGTGATTAT-AATTGTGTACAAACCTTAAGTGAACT-TAACAATGGTCA 563
| ||||| |||||||| ||| || ||||| ||||||||| ||||| | |||||| |||||
Sbjct 598 AAGATGATGATGGTGAGTATCAA-TGTGTCCAAACCTTAGGTGAA-TCTAACAACGGTCA 655
Query 564 TTCTTCTACCGTCTGGAGTATCTCTTTTAATGCTGCAGGGGACAAGATGGTCACTTGTAG 623
|||||||| || ||| ||||| ||||| |||||||||||||||||||||||||||||
Sbjct 656 CTCTTCTACGGTGTGGTCCATCTCATTTAACGCTGCAGGGGACAAGATGGTCACTTGTAG 715
Query 624 TGATGATCTAGCAGTGAAAATATGGAAGACAGATATTTCAAGGATGCAATCTGGTGAAGG 683
|||||||||| || |||| |||||| ||| |||||| | |||||||| ||||||||||
Sbjct 716 TGATGATCTAACATTGAAGATATGGGGGACGGATATTGCCAGGATGCAGTCTGGTGAAG- 774
Query 684 AT-ATGTACCCTGGACTCATGTTTGTACACTCTCTGGTTTTCACGATCGTACCATATATT 742
|| ||| ||| |||| |||| ||||||| |||||||||| ||| || ||||||||||| |
Sbjct 775 ATTATGCACCTTGGATTCATCTTTGTACTCTCTCTGGTTATCATGACCGTACCATATACT 834
Query 743 CAGTTCATTGGTCAAGGGACGGTGTTATTG-CTAGTGGAGCAGGCGATGATACTATACAG 801
| | ||| ||||||||||| | |||||| | ||||||||||||||| || |||||| |
Sbjct 835 CTGCTCACTGGTCAAGGGATGACATTATTGTC-AGTGGAGCAGGCGATAATGCTATACGG 893
Query 802 TTATTTGTGGACAGCGA-CAGTGACTCTGTTGATGGACCTTCATACAAACTTTTGGTTAA 860
|| |||||||| ||| | || |||||||||||||||||||||||| || |||||| | ||
Sbjct 894 TTGTTTGTGGAGAGCAAACA-TGACTCTGTTGATGGACCTTCATATAATCTTTTGCTGAA 952
Query 861 GAAGGAGAAAGCACATGAAA-TGGATGTAAATTCGGTCCAATGGGCACCTGATAAGGA-A 918
|||| | ||||||||||||| || |||||||||| ||||||||| |||| | | ||| |
Sbjct 953 GAAGAATAAAGCACATGAAAATG-ATGTAAATTCTGTCCAATGGTCACCCGGTGAGGGGA 1011
Query 919 AGCCGGTTGCTTGCCTCGGCCAGCGACGATAAAATGGTTAAGATTTGGAAACTTGC 974
| |||||| ||||||||||| || |||||| ||||| ||||||||| | |||||
Sbjct 1012 A-CCGGTTACTTGCCTCGGCTAGTGACGATGGGATGGTCAAGATTTGGCAGCTTGC 1066
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36674246154
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5