BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G33000.1
Length=1001
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491392 jgi|Araly1|491392|fgenesh2_kg.7__825__AT4G33000.2 1155 0.0
> Ahg491392 jgi|Araly1|491392|fgenesh2_kg.7__825__AT4G33000.2
Length=915
Score = 1155 bits (625), Expect = 0.0
Identities = 752/813 (92%), Gaps = 10/813 (1%)
Strand=Plus/Plus
Query 49 AGATCAAGCTCTCTCACTGTCGGAGAGCAATTCTGCGCCGTCTTT-ATACCTTTCTTTGC 107
|||||||||||||||||||| ||||| ||| ||||||| || ||| ||||||||||||||
Sbjct 1 AGATCAAGCTCTCTCACTGTTGGAGAACAAATCTGCGCTGT-TTTCATACCTTTCTTTGC 59
Query 108 CATTATCGATGTCCT-AGTTTCCTCCGTCGGACAATGCTTCGATTGCCGCAGCACATCGC 166
|||| | |||||||| | ||||||||||||||||||||||||||||||| | ||||||||
Sbjct 60 CATTGTTGATGTCCTCA-TTTCCTCCGTCGGACAATGCTTCGATTGCCGGACCACATCGC 118
Query 167 CTCG-GACATGTCAGCACGCGGATCTGGAACGTCTTGCTCGTGAATCTCAATTTTCAGTC 225
|| | |||||||||||||||||||| ||||||||||| |||||||||| ||||||||||
Sbjct 119 CT-GACACATGTCAGCACGCGGATCTCGAACGTCTTGCCCGTGAATCTCGATTTTCAGTC 177
Query 226 AATGAAGTTGAAGCTTTGTATGAGCTATTCAAGAAATTGAGCTGTTCAATTATTGATGAC 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 AATGAAGTTGAAGCTTTGTATGAGCTATTCAAGAAATTGAGCTGTTCAATTATTGATGAC 237
Query 286 GGCTTGATTCACAAGGAAGAGCTTAGACTGGCGCTGTTCCAAGCTCCATATGGTGAGAAC 345
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 238 GGCTTGATTCACAAGGAAGAGCTTCGACTGGCGCTGTTCCAAGCTCCATATGGTGAGAAC 297
Query 346 CTCTTTCTTGATAGGGTTTTTGATTTGTTCGATGAAAAGAAGAATGGGGTTATTGAGTTT 405
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 298 CTCTTTCTTGATAGGGTTTTTGATCTGTTCGATGAAAAGAAGAATGGGGTTATTGAGTTT 357
Query 406 GAGGAATTCATCCATGCACTCAGTGTCTTTCATCCCTATGCATCAATCCAGGAGAAGACC 465
|| |||||||| ||||| |||||||||||||||||||||||| |||| ||||||||| |
Sbjct 358 GAAGAATTCATACATGCTCTCAGTGTCTTTCATCCCTATGCACCAATAGAGGAGAAGATC 417
Query 466 GA-TTTTGCATTTAGGCTCTATGATCTAAGACAAACTGGATTCATTGAGCGAGAAGAGGT 524
|| |||| | ||||||||||| |||||||||||||| ||||| |||||||||||||||||
Sbjct 418 GACTTTTCC-TTTAGGCTCTACGATCTAAGACAAACCGGATTTATTGAGCGAGAAGAGGT 476
Query 525 GCAACAAATGGTTTCTGCTATTCTCTTGGAATCTGATATGATGCTATCCGATGAACTTCT 584
|||||||||||||||||||||||| |||||||||||||| |||| || |||||||||||
Sbjct 477 GCAACAAATGGTTTCTGCTATTCTGATGGAATCTGATATGTTGCTGTCTGATGAACTTCT 536
Query 585 GACCATGATTATTGATAAAACATTTGCTGATGCAGATTCTGACAAAGACGGTAAAATTAG 644
| ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 537 GGCCATGATTATTGATAAAACATTTGCTGATGCAGATTCCGACAAAGATGGTAAAATTAA 596
Query 645 TAAGGATGAATGGAATGTCTATGTGCATAAACATCCTAGCTTGTTGAAGAATATGACTCT 704
||||| |||||||| || ||||||| ||| ||||| |||||||||||||||||||||||
Sbjct 597 CAAGGAGGAATGGAAGGTGTATGTGCTTAAGCATCCGAGCTTGTTGAAGAATATGACTCT 656
Query 705 TCCTTACCTAAAGGATGTGACGACAGCATTCCCAAGTTTTATATTCAACACTGAGGTTGA 764
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 TCCTTACCTAAAGGATGTGACGACAGCATTCCCAAGTTTTATATTCAACACTGAGGTTGA 716
Query 765 AGACTGAGGCA-CAAC-TGTCCATGCAACACCGGTCATCTTTTTTCTGCTTGGTCCTGTA 822
||| | ||||| || | |||||||| |||||| || ||||||||||||||||||| |||
Sbjct 717 AGATTAAGGCAGCACCGTGTCCATGGAACACCCGTTGTCTTTTTTCTGCTTGGTCCCGTA 776
Query 823 ATTCGAGTGAGATTGTCATAGCGCAAGAGCAGA 855
||||||||||||||||||| |||||| ||||||
Sbjct 777 ATTCGAGTGAGATTGTCATGGCGCAAAAGCAGA 809
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37207966992
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5