BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G33020.1
Length=1035
Score E
Sequences producing significant alignments: (Bits) Value
Ahg353523 jgi|Araly1|353523|fgenesh1_pg.C_scaffold_7000696 1613 0.0
> Ahg353523 jgi|Araly1|353523|fgenesh1_pg.C_scaffold_7000696
Length=1029
Score = 1613 bits (873), Expect = 0.0
Identities = 984/1037 (95%), Gaps = 10/1037 (1%)
Strand=Plus/Plus
Query 1 ATGGCGTCGATCCTTATCTCCGGAGCTGCCGGAGTCTCGATTCCTCT-AGTTGGAACCCT 59
|||||||||||||||||||||||||||||||||||||| |||||||| | ||||||||||
Sbjct 1 ATGGCGTCGATCCTTATCTCCGGAGCTGCCGGAGTCTCTATTCCTCTCA-TTGGAACCCT 59
Query 60 ACTTCCGTTAAACGGTGGCTTAATGAGGGGAGCCAAAGCGTTCGCAGCAGGAGTTATCCT 119
|| ||||||||||||||||||||| | ||||| |||||||| || |||||||| |||||
Sbjct 60 CCTCCCGTTAAACGGTGGCTTAATGCGAGGAGCTAAAGCGTTTGCTGCAGGAGTGATCCT 119
Query 120 CGCAACAGGGTTCGTTCACATGCTCTCGGGCGGATCCA-AAGCTTTGTCCGACCCATGTC 178
||||||||||||||||||||||||||| ||||||| || |||||||||||||||| ||||
Sbjct 120 CGCAACAGGGTTCGTTCACATGCTCTCCGGCGGAT-CACAAGCTTTGTCCGACCCGTGTC 178
Query 179 TGCCGGAGTTTCCATGGAAAATGTTCCCTTTTCCAGAATTCTTCGCCATGGTCGCGGCGC 238
||||||||||||||||||||||||||||||| || |||||||||||||||||||| ||||
Sbjct 179 TGCCGGAGTTTCCATGGAAAATGTTCCCTTTCCCTGAATTCTTCGCCATGGTCGCCGCGC 238
Query 239 TTCTTACTCTGCTCGCGGATTTCATGATCACGGGATACTACGAGAGGAAACAGGAGAAGA 298
|||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 239 TTCTCACTCTGCTCGCGGATTTCATGATTACCGGATACTACGAGAGGAAACAGGAGAAGA 298
Query 299 TGATGAACCAGTCCGTCGAGTCGCTTGGTACGCAAGTTTCGGTTATGTCTGACCCAGGTC 358
||||||||||||| || ||||||||||||||||| ||||||||||| ||||||||| |||
Sbjct 299 TGATGAACCAGTCAGTGGAGTCGCTTGGTACGCACGTTTCGGTTATATCTGACCCAAGTC 358
Query 359 TTGAATCGGGTTTTCTGAGAGATCAAGAAGATGGAGGGGCGTTGCATATCGTGGGGATGC 418
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 359 TTGAATCGGGTTTTCTGAGGGATCAAGAAGATGGAGGGGCGTTGCATATTGTGGGGATGC 418
Query 419 GGGCTCACGCGGAGCATCACCGTCATAGCCTCTCCATGGGTGCCGAAGGTTTTGAGGCTC 478
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 GGGCTCACGCGGATCATCACCGTCATAGCCTCTCCATGGGTGCCGAAGGTTTTGAGGCTC 478
Query 479 TCTCTAAGAGAAGTGGTGTTTCCGGTCATGGACACGGCCACAGCCACGGCCACGGGGACG 538
|| | ||||||||||| |||||||||||||||||| | ||||||||||||| ||||
Sbjct 479 TCGCAAAGAGAAGTGGAGTTTCCGGTCATGGACAC-G-----GCCACGGCCACGGCGACG 532
Query 539 TAGGCTTGGACAGTGGTGTGAGGCACGTTGTTGTTTCTCAGATACTTGAAATGGGAATAG 598
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 533 TAGGCTTGGACAGTGGTGTAAGGCACGTTGTTGTTTCTCAGATACTTGAAATGGGAATAG 592
Query 599 TGTCACATTCAATAATCATAGGAATATCGCTTGGAGTATCACATAGCCCATGCACCATAC 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 TGTCACATTCAATAATCATAGGAATATCGCTTGGAGTATCACATAGCCCATGCACCATAC 652
Query 659 GTCCTCTCCTTCTCGCTCTTTCCTTCCACCAATTCTTCGAAGGTTTTGCCCTCGGTGGCT 718
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 653 GTCCTCTCCTTCTCGCTCTTTCCTTCCACCAATTCTTCGAAGGTTTCGCCCTGGGTGGCT 712
Query 719 GCGTCGCAGAGGCCAGACTAACCCCGCGTGGATCTGCCATGATGGCTTTCTTCTTCGCCA 778
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 713 GCGTTGCAGAGGCCAGACTAACCCCGCGTGGATCTGCCATGATGGCTTTCTTCTTCGCCA 772
Query 779 TCACTACTCCGATCGGTGTAGCGGTGGGAACGGCCATTGCCTCATCTTACAACTCTTATA 838
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 773 TCACTACTCCCATCGGTGTAGCCGTGGGAACGGCCATTGCCTCATCTTACAACTCTTATA 832
Query 839 GCGTTGCAGCATTGGTGGCTGAAGGAGTGCTCGATTCTCTCTCTGCGGGGATACTTGTGT 898
||||||| |||||||||||||||||||| |||||||||||||||||||| |||||||| |
Sbjct 833 GCGTTGCGGCATTGGTGGCTGAAGGAGTCCTCGATTCTCTCTCTGCGGGAATACTTGTTT 892
Query 899 ACATGGCGCTTGTGGATTTGATCGCTGCGGATTTCTTGAGCAAGAAGATGAGTGTTGATT 958
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 893 ACATGGCGCTTGTGGATTTGATTGCTGCTGATTTCTTGAGCAAGAAGATGAGTGTTGATT 952
Query 959 TCAGAGTTCAAGTTGTTTCTTATTGCTTTTTGTTTCTTGGAGCTGGGATGATGTCTGCTC 1018
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 953 TCAGAGTTCAAGTTGTTTCTTATTGCTTTTTGTTTCTTGGAGCTGGGATGATGTCTGCTC 1012
Query 1019 TTGCAATTTGGGCTTGA 1035
|||| |||||| |||||
Sbjct 1013 TTGCTATTTGGACTTGA 1029
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38504146170
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5