BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G33020.1 Length=1035 Score E Sequences producing significant alignments: (Bits) Value Ahg353523 jgi|Araly1|353523|fgenesh1_pg.C_scaffold_7000696 1613 0.0 > Ahg353523 jgi|Araly1|353523|fgenesh1_pg.C_scaffold_7000696 Length=1029 Score = 1613 bits (873), Expect = 0.0 Identities = 984/1037 (95%), Gaps = 10/1037 (1%) Strand=Plus/Plus Query 1 ATGGCGTCGATCCTTATCTCCGGAGCTGCCGGAGTCTCGATTCCTCT-AGTTGGAACCCT 59 |||||||||||||||||||||||||||||||||||||| |||||||| | |||||||||| Sbjct 1 ATGGCGTCGATCCTTATCTCCGGAGCTGCCGGAGTCTCTATTCCTCTCA-TTGGAACCCT 59 Query 60 ACTTCCGTTAAACGGTGGCTTAATGAGGGGAGCCAAAGCGTTCGCAGCAGGAGTTATCCT 119 || ||||||||||||||||||||| | ||||| |||||||| || |||||||| ||||| Sbjct 60 CCTCCCGTTAAACGGTGGCTTAATGCGAGGAGCTAAAGCGTTTGCTGCAGGAGTGATCCT 119 Query 120 CGCAACAGGGTTCGTTCACATGCTCTCGGGCGGATCCA-AAGCTTTGTCCGACCCATGTC 178 ||||||||||||||||||||||||||| ||||||| || |||||||||||||||| |||| Sbjct 120 CGCAACAGGGTTCGTTCACATGCTCTCCGGCGGAT-CACAAGCTTTGTCCGACCCGTGTC 178 Query 179 TGCCGGAGTTTCCATGGAAAATGTTCCCTTTTCCAGAATTCTTCGCCATGGTCGCGGCGC 238 ||||||||||||||||||||||||||||||| || |||||||||||||||||||| |||| Sbjct 179 TGCCGGAGTTTCCATGGAAAATGTTCCCTTTCCCTGAATTCTTCGCCATGGTCGCCGCGC 238 Query 239 TTCTTACTCTGCTCGCGGATTTCATGATCACGGGATACTACGAGAGGAAACAGGAGAAGA 298 |||| ||||||||||||||||||||||| || |||||||||||||||||||||||||||| Sbjct 239 TTCTCACTCTGCTCGCGGATTTCATGATTACCGGATACTACGAGAGGAAACAGGAGAAGA 298 Query 299 TGATGAACCAGTCCGTCGAGTCGCTTGGTACGCAAGTTTCGGTTATGTCTGACCCAGGTC 358 ||||||||||||| || ||||||||||||||||| ||||||||||| ||||||||| ||| Sbjct 299 TGATGAACCAGTCAGTGGAGTCGCTTGGTACGCACGTTTCGGTTATATCTGACCCAAGTC 358 Query 359 TTGAATCGGGTTTTCTGAGAGATCAAGAAGATGGAGGGGCGTTGCATATCGTGGGGATGC 418 ||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| Sbjct 359 TTGAATCGGGTTTTCTGAGGGATCAAGAAGATGGAGGGGCGTTGCATATTGTGGGGATGC 418 Query 419 GGGCTCACGCGGAGCATCACCGTCATAGCCTCTCCATGGGTGCCGAAGGTTTTGAGGCTC 478 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 419 GGGCTCACGCGGATCATCACCGTCATAGCCTCTCCATGGGTGCCGAAGGTTTTGAGGCTC 478 Query 479 TCTCTAAGAGAAGTGGTGTTTCCGGTCATGGACACGGCCACAGCCACGGCCACGGGGACG 538 || | ||||||||||| |||||||||||||||||| | ||||||||||||| |||| Sbjct 479 TCGCAAAGAGAAGTGGAGTTTCCGGTCATGGACAC-G-----GCCACGGCCACGGCGACG 532 Query 539 TAGGCTTGGACAGTGGTGTGAGGCACGTTGTTGTTTCTCAGATACTTGAAATGGGAATAG 598 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 533 TAGGCTTGGACAGTGGTGTAAGGCACGTTGTTGTTTCTCAGATACTTGAAATGGGAATAG 592 Query 599 TGTCACATTCAATAATCATAGGAATATCGCTTGGAGTATCACATAGCCCATGCACCATAC 658 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 593 TGTCACATTCAATAATCATAGGAATATCGCTTGGAGTATCACATAGCCCATGCACCATAC 652 Query 659 GTCCTCTCCTTCTCGCTCTTTCCTTCCACCAATTCTTCGAAGGTTTTGCCCTCGGTGGCT 718 |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| Sbjct 653 GTCCTCTCCTTCTCGCTCTTTCCTTCCACCAATTCTTCGAAGGTTTCGCCCTGGGTGGCT 712 Query 719 GCGTCGCAGAGGCCAGACTAACCCCGCGTGGATCTGCCATGATGGCTTTCTTCTTCGCCA 778 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 713 GCGTTGCAGAGGCCAGACTAACCCCGCGTGGATCTGCCATGATGGCTTTCTTCTTCGCCA 772 Query 779 TCACTACTCCGATCGGTGTAGCGGTGGGAACGGCCATTGCCTCATCTTACAACTCTTATA 838 |||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 773 TCACTACTCCCATCGGTGTAGCCGTGGGAACGGCCATTGCCTCATCTTACAACTCTTATA 832 Query 839 GCGTTGCAGCATTGGTGGCTGAAGGAGTGCTCGATTCTCTCTCTGCGGGGATACTTGTGT 898 ||||||| |||||||||||||||||||| |||||||||||||||||||| |||||||| | Sbjct 833 GCGTTGCGGCATTGGTGGCTGAAGGAGTCCTCGATTCTCTCTCTGCGGGAATACTTGTTT 892 Query 899 ACATGGCGCTTGTGGATTTGATCGCTGCGGATTTCTTGAGCAAGAAGATGAGTGTTGATT 958 |||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| Sbjct 893 ACATGGCGCTTGTGGATTTGATTGCTGCTGATTTCTTGAGCAAGAAGATGAGTGTTGATT 952 Query 959 TCAGAGTTCAAGTTGTTTCTTATTGCTTTTTGTTTCTTGGAGCTGGGATGATGTCTGCTC 1018 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 953 TCAGAGTTCAAGTTGTTTCTTATTGCTTTTTGTTTCTTGGAGCTGGGATGATGTCTGCTC 1012 Query 1019 TTGCAATTTGGGCTTGA 1035 |||| |||||| ||||| Sbjct 1013 TTGCTATTTGGACTTGA 1029 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 38504146170 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5