BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G33040.1
Length=770
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491387 jgi|Araly1|491387|fgenesh2_kg.7__820__AT4G33040.1 1040 0.0
Ahg488035 jgi|Araly1|488035|fgenesh2_kg.6__1169__AT5G11930.1 93.5 2e-18
> Ahg491387 jgi|Araly1|491387|fgenesh2_kg.7__820__AT4G33040.1
Length=729
Score = 1040 bits (563), Expect = 0.0
Identities = 698/758 (92%), Gaps = 30/758 (4%)
Strand=Plus/Plus
Query 1 GATTCCTTCTTTTGTTTTAAACTTCTTTTTGATTCTTTCTATATATACAAATACAAAATC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GATTCCTTCTTTTGTTTTAAACTTCTTTTTGATTCTTTCTATATATACAAATACAAAATC 60
Query 61 TCCTCTTCTTCTTGAAAAAGCTCTTTACGTTtctctctctctctctAATTGCCTGCTATG 120
||||||||||||||||||||||| ||||| |||||||||||| ||||||||||||||
Sbjct 61 TCCTCTTCTTCTTGAAAAAGCTCCTTACGGTTCTCTCTCTCT----AATTGCCTGCTATG 116
Query 121 ATGCAAGAATTAGGCTTACAACGTTTCTCAAACGACGTCGTTCGCTTAGACCTCACTCCT 180
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 117 ATGCAAGAATTAGGCTTAGAACGTTTCTCAAACGACGTCGTTCGCTTAGACCTCACTCCT 176
Query 181 CCTTCTCAAACCTCATCTACTTCTCTTTCCATCGACGAAGAGGAATCAACGGAAGCCAAG 240
||| | ||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 177 CCT-C--AAACCTCTTCTACTTCTCTCTCCATCGACGAAGAGGAATCAACGGAAGCCAAG 233
Query 241 ATCCGACGGCTGATATCGGAGCATCCTGTGATCATCTTCAGTAGATCTTCATGTTGCATG 300
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 234 ATCCGACGGCTGATATCGGAGCATCCTGTGATCATCTTCAGTAGATCGTCATGTTGCATG 293
Query 301 TGCCACGTCATGAAGAGACTCTTAGCAACGATCGGCGTAATCCCCACCGTCATCGAGCTC 360
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 294 TGCCACGTCATGAAAAGACTCTTAGCAACGATCGGCGTAATCCCCACCGTCATCGAGCTC 353
Query 361 GATGATCACGAGGTTTCCTCTCTTCCCACGGCTCTACAAGATGAATATTCCGGTGGCGTC 420
||||||||||||||||||||||| |||||||||||| |||| ||||||||||| | |||
Sbjct 354 GATGATCACGAGGTTTCCTCTCTCCCCACGGCTCTAGAAGAAGAATATTCCGGCGAAGTC 413
Query 421 TCCGTCGTTGGTCCTCCGCCGGCGGTTTTCATTGGCCGTGAGTGCGTCGGAGGTCTTGAG 480
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 414 TCCGCCGTTGTTCCTCCGCCGGCGGTTTTCATTGGCCGTGAGTGCGTCGGAGGTCTTGAG 473
Query 481 TCCCTTGTCGCTCTTCACTTAAGTGGTCAACTTGTTCCTAAGCTTGTCCAAGTTGGAGCT 540
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 474 TCCCTCGTCGCTCTTCACTTAAGTGGTCAACTTGTTCCTAAGCTTGTTCAAGTTGGAGCT 533
Query 541 CTTTGGGTATGATTGTAATTTTCATCGTCTTCTTACTTGTGTTAAAATCAATAGGCTTTT 600
||||||||||||||||||||||| || |||| |||||||| |||| | || ||
Sbjct 534 CTTTGGGTATGATTGTAATTTTCCTCATCTTATTACTTGTCTTAACA--AA-AG------ 584
Query 601 GCAGTATCAAAAGAAAACAAAAATTAGGGTTTCACTTCAATTGGTCATGAAAGCCAAATT 660
| | |||||||| |||||||||| ||||||||| ||||||||||| |||
Sbjct 585 --A--A--AAAAGAAA-------TTAGGGTTTCTCTTCAATTGCTCATGAAAGCCTGATT 631
Query 661 CTGATTATCATCAGATGATCATAATTAAACACCCATGTAGAAAATGAATTATGAATAATT 720
||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 632 CTGATTATCATCAGATGATCAAAATTAAATACCCATGTAGAAAATGAATTATGAATAATT 691
Query 721 AAAGATGTGTAATTAGTA-AATTTTATATGATTTGCTT 757
|||||||||||| ||||| |||||||||| ||||||||
Sbjct 692 AAAGATGTGTAAGTAGTATAATTTTATATAATTTGCTT 729
> Ahg488035 jgi|Araly1|488035|fgenesh2_kg.6__1169__AT5G11930.1
Length=634
Score = 93.5 bits (50), Expect = 2e-18
Identities = 96/117 (82%), Gaps = 7/117 (6%)
Strand=Plus/Plus
Query 205 CTTTCCATCGACGAAGAGGA-ATCAACGGAAG-CCAAGATCCGACGGCTGATATCGGAGC 262
||||| |||| |||||||| | || | | || | ||||| ||||||||||||| ||||
Sbjct 132 CTTTCGTTCGATGAAGAGGAGA-CATCAG-AGTCAAAGATTGGACGGCTGATATCAGAGC 189
Query 263 ATCCTGTGATCATCTTCAGTAGATC-T--TCATGTTGCATGTGCCACGTCATGAAGA 316
|||| || ||||| |||| | |||| | ||||||||||||||||||||||||||||
Sbjct 190 ATCCAGTCATCATATTCACTCGATCTTCCTCATGTTGCATGTGCCACGTCATGAAGA 246
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28401573165
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5