BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G33060.1
Length=1829
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491382 jgi|Araly1|491382|fgenesh2_kg.7__815__AT4G33060.1 2584 0.0
> Ahg491382 jgi|Araly1|491382|fgenesh2_kg.7__815__AT4G33060.1
Length=1667
Score = 2584 bits (1399), Expect = 0.0
Identities = 1571/1653 (95%), Gaps = 16/1653 (1%)
Strand=Plus/Plus
Query 43 GAGATGTCGACGGTGTACGTGCTAGAGCCGCCGACAAAGGGAAAGGTCATTGTAAATACT 102
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GAGATGTCGACGGTGTACGTGCTAGAGCCGCCGACAAAGGGAAAGGTCATTGTAAATACA 60
Query 103 ACTCATGGTCCAATCGACGTCGAGCTTTGGCCTAAGGAAGCGCCCAAATCCGTACGGAAC 162
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 61 ACTCATGGTCCAATCGACGTCGAGCTATGGCCTAAGGAAGCGCCTAAATCCGTACGGAAC 120
Query 163 TTCGTTCAACTATGCCTCGAGGGTTACTTTGACAACACCATCTTCCATCGTGTCATTCCC 222
|||||||||||||| |||||||||||||| ||||||||||||||||| ||||| ||||||
Sbjct 121 TTCGTTCAACTATGTCTCGAGGGTTACTTCGACAACACCATCTTCCACCGTGTTATTCCC 180
Query 223 GGTTTTCTCGTTCAAGGCGGCGATCCCACCGGCTCCGGAACCGGTGGAGATAGTATATAT 282
|||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||
Sbjct 181 GGTTTTCTCGTTCAAGGCGGCGATCCCACCGGCTCCGGCACTGGTGGAGAGAGTATATAT 240
Query 283 GGAGGTGTCTTTGCCGATGAGTTCCATTCAAGGCTGAGATTTAGCCACCGTGGGATTGTT 342
|||||||||||||||||||| ||||||||||| ||||||||| |||||||||||||||
Sbjct 241 GGAGGTGTCTTTGCCGATGAATTCCATTCAAGATTGAGATTTAACCACCGTGGGATTGTA 300
Query 343 GCCATGGCTAATGCGAGCTCACCTAATTCTAATGGAAGTCAGTTCTTTTTCACTTTGGAT 402
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 301 GCCATGGCTAATGCGAGCTCACCGAATTCTAATGGAAGTCAGTTCTTTTTCACTTTGGAT 360
Query 403 AAGTGTGATTGGCTTGATAAGAAGCACACTATCTTTGGCAAGGTAACGGGCGATTCAATC 462
|||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 361 AAGTCTGATTGGCTTGATAAGAAGCACACTATCTTTGGCAAGGTGACGGGCGATTCAATC 420
Query 463 TACAATCTTTTAAGACTAGGAGAGGTTGACACGAGTAAGGATGATCGACCTCTGGATCCT 522
||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||
Sbjct 421 TACAATCTTTTAAGACTAGGAGAGGTTGACACGAGTAAGGATGATCGGCCACTAGATCCT 480
Query 523 GCTCCGAAAATATTATCTGTCGAGGTTTTGTGGAACCCTTTTGAAGATATTGTTCCTAGA 582
|| ||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||
Sbjct 481 GCCCCGAAAATATTATCTGTTGAGGTTTTGTGGAACCCGTTCGAAGATATTGTTCCTAGA 540
Query 583 GTGTTAG-CAAAGACATCAGAAGAATCTGCTGCTGAAATCAAGGAACC-CCCAACAAAGC 640
||||| | ||||||||||| ||||||||| |||||||||||||||||| || || |||||
Sbjct 541 GTGTT-GACAAAGACATCACAAGAATCTGTTGCTGAAATCAAGGAACCTCCGAA-AAAGC 598
Query 641 CCGTGAAGAAATTGAATTTACTGTCATTCGGAGAAGAAGCTGAAGAAGAGGAAAAGGAAC 700
|||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||
Sbjct 599 CCGTGAAGAAATTGAATTTACTATCATTCGGAGAAGAAGCTGAGGAAGAGGAGAAGGAAC 658
Query 701 TGGCTGTTGTAAAGCAAAAGATTAAGAGCAGTCATGACGTATTGAATGATCCTCGACTTT 760
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 TGGCTGTTGTAAAGCAAAAGATTAAGAGCAGTCATGACGTATTGAATGATCCTCGACTTT 718
Query 761 TGAAGGCAGAAGCTTCAGATAAAGAGA-GGAACGCATCTGAGTCCAAGGAGGTACTATCT 819
|||||||||||||| |||||||||| | |||| ||||||||||| |||||||||||||||
Sbjct 719 TGAAGGCAGAAGCTACAGATAAAGA-ACGGAATGCATCTGAGTCGAAGGAGGTACTATCT 777
Query 820 GTGCGAGAAGCTCTGAATGCTAAGAAAGAAGCGGCTCAAAAAGATAAAAGCTTTTCTGTA 879
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 778 GTGCGAGAAGCTCTGAATACTAAGAAAGAAGCGGCTCAAAAAGATAAAAGCTTTTCTGTA 837
Query 880 TCTGATACAGTTGGAAATAGTGATGATGACGATGATGGTGAAGATGAGACTAAATTTGAT 939
||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 838 TCTGATACAGTTGGACATAGTGATGATGACGATGATGATGAAGATGAGACTAAATTTGAT 897
Query 940 GCAAAGATGAGGAATCAAGTGCTCAGCAGAAGGAAGGAGATTGGAGATACGCCTTCAAAG 999
||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 898 GCAAAGATGAGGAATCAAGTGCTCAGCAGAAGGAAGGAGATGGGAGACACGCCTTCAAAA 957
Query 1000 CCGACTCAGaaaaaaaaGAGCTCTAGCCTGAAAGGCCGTGAAGAGTCTACGCAAAGGTCT 1059
|| ||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 958 CCAACTCAGAAAAAAAAGAGCTCTAGTCTGAAAGGCCGTGAAGAGTCTATGCAAAGGTCT 1017
Query 1060 GATGCTGTAAGTAGTGAAGATGAGAAACCAAGGATGGAAAAGTTGTCCTTGAAGAAAAAA 1119
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 1018 GATGCTGTAAGTAGTGAAGACGAGAAACCAAGGATGGAAAAGTTATCCTTGAAGAAAAAA 1077
Query 1120 GGAATAGGCTCAGAAGCCAAAGCCGAACATATGGAGAAAGGAGACACTGATTTACAGCTT 1179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 GGAATAGGCTCAGAAGCCAAAGCCGAACATATGGAGAAAGGAGACACTGATTTACAGCTT 1137
Query 1180 TACAACGCTTCTGAACGCGCCCGGCAGTTGCATAAGTTGAAAAAGCGCAGACTGCAAGGA 1239
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1138 TACAACGCTTCTGAACGCGCCCGGCAGTTGCATAAGTTGAAAAAACGCAGACTGCAAGGA 1197
Query 1240 AATGAGGATTCTGTGTTAGCAAAACTCGAGAAGTTTAAGCAGTCTATCTCTGCAAAACCG 1299
||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1198 AATGAGGATGCTGTGTTAGCAAAACTCGAGAAGTTTAAGCAGTCTATATCTGCAAAACCG 1257
Query 1300 TTTACCTCGAGTAATGAACCAGTAGTGTTGACCTCGAGTAGTGAACCAGTTGACAATAAA 1359
||||||||||||||||||||||||| ||| |||||||||||||||||||| |||||||||
Sbjct 1258 TTTACCTCGAGTAATGAACCAGTAGCGTTTACCTCGAGTAGTGAACCAGTAGACAATAAA 1317
Query 1360 GAAGAAGATCTCTCTGATTGGAAGAATGTAAAGCTCAAGTTTGCTCCTGAGCGTGGCAAG 1419
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1318 GAAGAAGATCTCTCTGATTGGAAGAAAGTAAAGCTCAAGTTTGCTCCTGAGCGTGGCAAG 1377
Query 1420 GATAAAATGTCACGCAGGGATGATCCAGATGCGTATATGGTGGTTGACCCTCTTCTTGAA 1479
||||||||||| |||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct 1378 GATAAAATGTCGCGCAGGGATGATCCAGATGCGTATGTGGTGGTCGACCCTCTTCTTGAA 1437
Query 1480 AAGGGAAAAGAGAAGTTCAACAGAATGCAAGCCAAACAAAAACGAAGGGAGCGAGAATGG 1539
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1438 AAGGGAAAAGAGAAGTTCAACAGAATGCAAGCAAAACAAAAACGAAGGGAGCGAGAATGG 1497
Query 1540 TCTGGAAAATCTCTTGCCTGAGTTTGGAAATCTTAACCATTTAATTTTGTTTT-CTTATG 1598
|| |||||||||||||||||||||||| ||||||||| ||| |||||| |||| ||| ||
Sbjct 1498 TCAGGAAAATCTCTTGCCTGAGTTTGGGAATCTTAACAATTCAATTTTTTTTTACTTTTG 1557
Query 1599 TTG--------ATCCTTAAGATGCCCGTTCACTGTCAAAATCTCTCCTGTTT-AAACTTA 1649
||| ||||||||||| |||||| |||||||||||||||||||||| |||||||
Sbjct 1558 TTGTTTTGTTGATCCTTAAGATACCCGTTGACTGTCAAAATCTCTCCTGTTTTAAACTTA 1617
Query 1650 GATACATTCAGAGACATGAATGAGCATCTTAAA 1682
||||||| ||||||||||| |||||||||||||
Sbjct 1618 GATACATACAGAGACATGAGTGAGCATCTTAAA 1650
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68676711735
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5