BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G33070.1
Length=2149
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491381 jgi|Araly1|491381|fgenesh2_kg.7__814__AT4G33070.1 2970 0.0
Ahg486945 jgi|Araly1|486945|fgenesh2_kg.6__79__AT5G01320.1 2159 0.0
Ahg349471 jgi|Araly1|349471|fgenesh1_pg.C_scaffold_6000064 1995 0.0
> Ahg491381 jgi|Araly1|491381|fgenesh2_kg.7__814__AT4G33070.1
Length=2059
Score = 2970 bits (1608), Expect = 0.0
Identities = 1814/1916 (95%), Gaps = 4/1916 (0%)
Strand=Plus/Plus
Query 53 TTTTTTAATTTCTCTGTTAGTGAACTCAAACCTTCCCATTTCCATGGACACCAAAATCGG 112
||||| |||||||||||||||||||||||| ||||| ||||| |||||||||||||||||
Sbjct 1 TTTTTCAATTTCTCTGTTAGTGAACTCAAATCTTCCAATTTCTATGGACACCAAAATCGG 60
Query 113 ATCGATCGATGATTGCAAGCCGACGAACGGCGACGTCTGTAGTCCAACAAACGGCACCGT 172
|||||||||| |||||||||||||||| ||||||||| |||||||| |||||||| ||||
Sbjct 61 ATCGATCGATTATTGCAAGCCGACGAATGGCGACGTCGGTAGTCCACCAAACGGCGCCGT 120
Query 173 CGCAACAATCCACAACTCTGTTCCTTCCTCCGCTATCACCATCAACTAC-TGCGACGCGA 231
| |||||||||||||||||||||||||||||||||||||| |||||| | ||||| |||
Sbjct 121 CTCAACAATCCACAACTCTGTTCCTTCCTCCGCTATCACCGTCAACT-CATGCGATTCGA 179
Query 232 CTCTCGGCCGTCACTTAGCTCGTCGTCTCGTCCAAGCCGGCGTTACGGATGTTTTCTCTG 291
|| |||| ||| || ||||||| |||||||||||||||||||| || ||| | |||||||
Sbjct 180 CTATCGGTCGTTACATAGCTCGCCGTCTCGTCCAAGCCGGCGTGACCGATATCTTCTCTG 239
Query 292 TTCCCGGAGATTTCAACCTCACTTTGCTTGATCACCTCATGGCTGAGCCGGACCTCAACC 351
||||||| |||||||||||||||||||||||||||||||||||||||||||| || || |
Sbjct 240 TTCCCGGCGATTTCAACCTCACTTTGCTTGATCACCTCATGGCTGAGCCGGAGCTGAATC 299
Query 352 TAATCGGATGTTGTAACGAGCTAAACGCCGGTTACGCTGCCGACGGTTACGCTAGATCTC 411
| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 300 TGATCGGCTGTTGTAACGAGCTTAACGCCGGTTACGCTGCCGACGGTTACGCTAGATCTC 359
Query 412 GTGGAGTCGGCGCTTGCGTTGTTACCTTCACCGTTGGTGGACTCAGCGTTTTAAACGCGA 471
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 360 GTGGAGTCGGCGCTTGCGTTGTGACCTTCACCGTTGGTGGACTCAGCGTTTTGAACGCGA 419
Query 472 TCGCTGGTGCTTACAGCGAGAATCTTCCTCTTATCTGTATCGTCGGAGGTCCTAACTCTA 531
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 420 TCGCTGGTGCTTACAGCGAGAATCTTCCGCTTATCTGTATCGTCGGAGGTCCTAACTCTA 479
Query 532 ACGATTATGGCACTAACCGGATTCTTCATCACACCATTGGATTACCTGATTTTAGCCAAG 591
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 480 ACGATTATGGCACCAACCGGATTCTTCATCACACCATCGGATTACCTGATTTTAGCCAAG 539
Query 592 AGCTTAGGTGCTTCCAAACGGTGACTTGTTATCAGGCGGTGGTGAACAATTTAGATGATG 651
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 540 AGCTTAGGTGCTTCCAAACGGTGACTTGTTATCAGGCGGTGGTGAACAATTTGGAGGATG 599
Query 652 CTCATGAACAGATTGATAAAGCAATATCAACAGCTTTGAAAGAGAGCAAGCCTGTGTATA 711
|||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct 600 CTCATGAACAGATTGATATAGCGATATCAACAGCTTTGAAAGAGAGCAAGCCTGTGTATA 659
Query 712 TAAGTGTAAGCTGTAACTTAGCAGCGATTCCTCATCATACATTTAGCCGTGATCCTGTCC 771
|||| ||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 660 TAAGCATAAGCTGTAACTTAGCAGCGATTCCTCATCATACATTTAGCCGTGCTCCAGTCC 719
Query 772 CTTTTTCTCTAGCTCCAAGATTGAGCAACAAGATGGGTTTAGAAGCTGCGGTGGAAGCAA 831
||||||||||||| || ||||||||||||||||||||| |||||||||||||||||||||
Sbjct 720 CTTTTTCTCTAGCGCCTAGATTGAGCAACAAGATGGGTCTAGAAGCTGCGGTGGAAGCAA 779
Query 832 CATTGGAGTTTCTGAATAAGGCTGTGAAGCCAGTTATGGTTGGTGGTCCTAAGTTGCGTG 891
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 CTTTGGAGTTTCTGAATAAGGCTGTGAAGCCAGTTATGGTTGGTGGTCCTAAGTTGCGTG 839
Query 892 TGGCTAAAGCTTGTGATGC-CTTTGTTGAGCTAGCTGATGCTTCAGGCTATGCTTTGGCG 950
||||||||||||||||| | |||||||||||||||||||||||| ||||||||| | ||
Sbjct 840 TGGCTAAAGCTTGTGAT-CTCTTTGTTGAGCTAGCTGATGCTTCTGGCTATGCTAAGCCG 898
Query 951 ATGATGCCTTCTGCGAAAGGCTTTGTACCAGAGCACCATCCTCATTTCATTGGAACTTAT 1010
||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct 899 GCGATGCCTTCTGCGAAAGGCCTTGTACCAGAGCACCATCCTCATTTCATTGGCACTTAT 958
Query 1011 TGGGGAGCAGTGAGCACTCCTTTTTGCTCTGAGATTGTGGAATCTGCGGATGCTTACATT 1070
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 TGGGGAGCAGTGAGCACTCCTTTTTGCTCTGAGATTGTGGAATCTGCGGATGCTTACATT 1018
Query 1071 TTTGCAGGTCCAATCTTCAACGACTATAGCTCTGTTGGTTACTCGCTTCTCCTCAAGAAA 1130
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1019 TTTGCAGGTCCAATCTTCAACGACTATAGCTCTGTGGGTTACTCGCTTCTCCTCAAGAAA 1078
Query 1131 GAAAAAGCCATCGTTGTGCAACCTGATCGTATCACTGTGGCCAATGGTCCTACTTTTGGT 1190
|||||||||||||| ||||| ||||||||| |||||||||| |||||||| || |||||
Sbjct 1079 GAAAAAGCCATCGTCGTGCATCCTGATCGTGTCACTGTGGCTAATGGTCCAACGTTTGGA 1138
Query 1191 TGCATTTTGATGAGCGATTTCTTCAGGGAATTGTCTAAGAGGGTGAAGCGTAACGAGACT 1250
|| || ||||||||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct 1139 TGGGTTCAGATGAGCGATTTCTTCAGGGAATTGGCTAAGAGGGTGAAGCGTAATGAGACT 1198
Query 1251 GCATATGAGAACTACCATAGGATCTTTGTCCCTGAAGGTAAGCCATTGAAGTGTGAATCA 1310
|| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 1199 GCTTATGAGAACTACCATAGGATCTTTGTTCCTGAAGGTAAGCCATTGAAGTGCGAATCA 1258
Query 1311 AGAGAGCCATTGAGAGTTAACACAATGTTCCAGCACATTCAGAAGATGCTCTCTAGTGAA 1370
| ||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 1259 AAAGAGCCATTAAGAGTTAATACAATGTTCCAACACATTCAGAAGATGCTCTCTAGTGAA 1318
Query 1371 ACCGCTGTGATTGCTGAAACCGGTGATTCTTGGTTCAATTGCCAAAAACTAAAGCTGCCA 1430
|||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct 1319 ACCGCTGTGATTGCTGAAACCGGTGATTCTTGGTTCAATTGCCAGAAACTAAAGTTGCCA 1378
Query 1431 AAAGGATGTGGGTACGAGTTTCAGATGCAGTATGGATCGATTGGGTGGTCTGTTGGTGCA 1490
| ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1379 AGAGGCTGTGGATACGAGTTTCAGATGCAGTATGGATCGATTGGGTGGTCTGTTGGTGCA 1438
Query 1491 ACTCTAGGATACGCACAGGCATCACCAGAGAAGCGAGTGTTGGCATTCATCGGTGATGGG 1550
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1439 ACTCTAGGATACGCACAGGCATCACCAGAGAAGCGAGTGTTGGCATTCATCGGTGACGGG 1498
Query 1551 AGTTTCCAAGTCACGGTTCAGGACATATCAACAATGCTGCGTAATGGACAGAAGACGATC 1610
||||||||||| |||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1499 AGTTTCCAAGTGACGGCTCAGGACATATCAACAATGCTGCGTAATCGACAGAAGACGATC 1558
Query 1611 ATCTTCTTGATTAACAATGGTGGCTACACCATTGAAGTAGAGATTCATGACGGTCCTTAT 1670
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1559 ATCTTCTTGATTAACAATGGTGGCTACACCATTGAAGTAGAGATTCATGATGGTCCTTAT 1618
Query 1671 AACGTGATTAAGAACTGGAACTACACTGGTCTCGTTGACGCCATTCATAACGGTGAAGGC 1730
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1619 AACGTGATTAAGAACTGGAACTACACTGGTCTCGTTGACGCCATTCATAACGGTGAAGGC 1678
Query 1731 AATTGCTGGACTGCAAAGGTGAGATACGAAGAGGAGTTAGTGGAGGCGATTACGACAGCG 1790
|||||||||||| |||||||||||||||| |||||||||||||||||||| | ||||||
Sbjct 1679 AATTGCTGGACTACAAAGGTGAGATACGAGGAGGAGTTAGTGGAGGCGATCAAGACAGCA 1738
Query 1791 ACGACGGAGAAGAAAGATTGTCTATGTTTCATAGAAGTGATTCTTCACAAGGATGATACG 1850
|| | |||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1739 ACAATGGAGAAGAAAGATTGTCTATGTTTCATAGAAGTGATTCTTCATAAGGATGATACG 1798
Query 1851 AGCAAAGAGTTGCTTGAGTGGGGCTCACGCGTCTCTGCTGCTAACAGCCGTCCTCCCAAT 1910
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 1799 AGCAAAGAGTTGCTTGAGTGGGGCTCACGCGTATCTGCTGCTAATAGCCGTCCTCCCAAT 1858
Query 1911 CCTCAGTAGAAGAAGCAACACAGAATCTTCAATGCTTCTTACCAATTTAGTGACAT 1966
|||||||||||||||||||||||| |||||| ||||||||||||||| ||||||||
Sbjct 1859 CCTCAGTAGAAGAAGCAACACAGAGTCTTCACTGCTTCTTACCAATTCAGTGACAT 1914
> Ahg486945 jgi|Araly1|486945|fgenesh2_kg.6__79__AT5G01320.1
Length=1952
Score = 2159 bits (1169), Expect = 0.0
Identities = 1631/1854 (88%), Gaps = 32/1854 (2%)
Strand=Plus/Plus
Query 96 ATGGACACCAAAATCGGATCGATCGATGA-TTGCAAGCCGACGAAC-GGCGACGTCTGTA 153
|||||||||||||| ||||| ||||| | || ||||| || ||| ||||||||| | |
Sbjct 1 ATGGACACCAAAATAGGATCCATCGA-CACGTGTAAGCCAAC-AACTGGCGACGTCGGAA 58
Query 154 GTCCAACAAACGGCACCGTCGCAACAATCCACAACTCTGTTCCTTCCTCCGCTATCACCA 213
|||| ||| | | ||||||||||||| | ||| | ||| |||| | | ||||
Sbjct 59 GTCCCCCAAGCAACGCCGTCGCAACAAT-C-CAAGAC---TCC--GCTCC-C-ACCACC- 108
Query 214 TCAACTACTGCGACGCGACTCTCGGCCGTCACTTAGCTCGTCGTCTCGTCCAAGCCGGCG 273
|||| || ||| ||||||||||| ||||||||||| || ||||| ||||||||||| |
Sbjct 109 GCAAC--CTCCGAAGCGACTCTCGGACGTCACTTAGCCCGCCGTCTTGTCCAAGCCGGAG 166
Query 274 TTACGGATGTTTTCTCTGTTCCCGGAGATTTCAACCTCACT-TTGCTTGATCACCTCATG 332
| || || |||||||||||||||| ||||| ||||| ||| || ||||| ||||||||
Sbjct 167 TCACCGACATTTTCTCTGTTCCCGGTGATTTTAACCTAACTCTT-CTTGACCACCTCATC 225
Query 333 GCTGAGCCGGACCTCAACCTA-ATCGGATGTTGTAACGAGCTAAACGCCGGTTACGCTGC 391
|| || || || ||||| | | |||||||| || |||||||| |||||||||||||| ||
Sbjct 226 GCCGAACCAGAGCTCAA-CAACATCGGATGCTGCAACGAGCTTAACGCCGGTTACGCCGC 284
Query 392 CGACGGTTACGCTAGATCTCGTGGAGTCGGCGCTTGCGTTGTTACCTTCACCGTTGGTGG 451
||| ||||||||| |||||||||||||||| |||||||| || |||||||||||||||||
Sbjct 285 CGATGGTTACGCTCGATCTCGTGGAGTCGGTGCTTGCGTCGTGACCTTCACCGTTGGTGG 344
Query 452 ACTCAGCGTTTTAAACGCGATCGCTGGTGCTTACAGCGAGAATCTTCCTCTTATCTGTAT 511
|||||||||||| ||||||||||| ||||| ||||| |||||||| || | ||||||||
Sbjct 345 ACTCAGCGTTTTGAACGCGATCGCAGGTGCATACAGTGAGAATCTGCCAGTGATCTGTAT 404
Query 512 CGTCGGAGGTCCTAACTCTAACGA-TTATGGCACTAACCGGATTCTTCATCACACCATTG 570
|||||||||||||||||| || || || |||||| |||||||||||||||||||||||||
Sbjct 405 CGTCGGAGGTCCTAACTCCAATGACTT-TGGCACAAACCGGATTCTTCATCACACCATTG 463
Query 571 GATTACCTGATTTTAGCCAAGAGCTTAGGTGCTTCCAAACGGTGACTTGTTATCAGGCGG 630
| ||||||||||||||||||||||||||||| ||||| || || ||||| |||||||| |
Sbjct 464 GTTTACCTGATTTTAGCCAAGAGCTTAGGTGTTTCCAGACTGTTACTTGCTATCAGGCTG 523
Query 631 TGGTGAACAATTTAGATGATGCTCATGAACAGATTGATAAAGCAATATCAACAGCTTTGA 690
||||||||||||| || ||||||||||||||||| || || || ||||||||||||||||
Sbjct 524 TGGTGAACAATTTGGAGGATGCTCATGAACAGATCGACAAGGCGATATCAACAGCTTTGA 583
Query 691 AAGAGAGCAAGCCTGTGTATATAAGTGTAAGCTGTAACTTAGCAGCGATTCCTCATCATA 750
||||||||||||||||||| || || | |||||||||||||| |||| |||||||| ||
Sbjct 584 AAGAGAGCAAGCCTGTGTACATTAGCATCAGCTGTAACTTAGCTGCGACTCCTCATCCTA 643
Query 751 CATTTAGC-CGTGATCCTGTCCCTTTTTCTCTAGCTCCAA-GATTGAGCAACAAGATGGG 808
||||| || |||||||||||||||||| | ||| |||||| || ||||||||||||||||
Sbjct 644 CATTT-GCTCGTGATCCTGTCCCTTTTGCCCTAACTCCAAGGA-TGAGCAACAAGATGGG 701
Query 809 TTTAGAAGCTGCGGTGGAAGCAACATTGGAGTTTCTGAATAAGGCTGTGAAGCCAGTTAT 868
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 702 TTTAGAAGCTGCGGTGGAAGCAACATTGGAGTTTCTGAACAAGGCAGTGAAGCCAGTTAT 761
Query 869 GGTTGGTGGTCCTAAGTTGCGTGTGGCTAAAGCTTGTGATGCCTTTGTTGAGCTAGCTGA 928
|||||||||||| |||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct 762 GGTTGGTGGTCCAAAGTTGCGTGTGGCTAAAGCAAGTGATGCCTTTGTGGAGCTAGCTGA 821
Query 929 TGCTTCAGGCTATGCTTTGGCGATGATGCCTTCTGCGAAAGGCTTTGTACCAGAGCACCA 988
|||||||||||| || | ||| |||||||||| || |||||||||||||||||| ||||
Sbjct 822 TGCTTCAGGCTACCCTCTCGCGGTGATGCCTTCGGCAAAAGGCTTTGTACCAGAGAACCA 881
Query 989 TCCTCATTTCATTGGAACTTATTGGGGAGCAGTGAGCACTCCTTTTTGCTCTGAGATTGT 1048
|||||| |||||||| ||||| |||||||||||||||||||| || ||||||||||||||
Sbjct 882 TCCTCACTTCATTGGTACTTACTGGGGAGCAGTGAGCACTCCGTTCTGCTCTGAGATTGT 941
Query 1049 GGAATCTGCGGATGCTTACATTTTTGCAGGTCCAATCTTCAACGACTATAGCTCTGTTGG 1108
|||||||| |||||||||||||| ||||||||||| ||||||||||| ||||| || ||
Sbjct 942 CGAATCTGCAGATGCTTACATTTTCGCAGGTCCAATATTCAACGACTACAGCTCCGTGGG 1001
Query 1109 TTACTCGCTTCTCCTCAAGAAAGAAAAAGCCATCGTTGTGCAACCTGATCGTATCACTGT 1168
|||||| ||||||||||||||||||||||||||| ||||||| ||||| || || |||
Sbjct 1002 TTACTCACTTCTCCTCAAGAAAGAAAAAGCCATCATTGTGCATCCTGACCGCGTCGTTGT 1061
Query 1169 GGCCAATGGTCCTACTTTTGGTTGCATTTTGATGAGCGATTTCTTCAGGGAATTGTCTAA 1228
||| ||||||||||| ||||||||| || |||||||||||||||| ||||||||| ||||
Sbjct 1062 GGCTAATGGTCCTACGTTTGGTTGCGTTCTGATGAGCGATTTCTTTAGGGAATTGGCTAA 1121
Query 1229 GAGGGTGAAGCGTAACGAGACTGCATATGAGAACTACCATAGGATCTTTGTCCCTGAAGG 1288
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 1122 GAGGGTGAAGCGTAACGAGACCGCTTATGAGAACTACCATAGGATCTTTGTCCCTGAAGG 1181
Query 1289 TAAGCCATTGAAGTGTGAATCAAGAGAGCCATTGAGAGTTAACACAATGTTCCAGCACAT 1348
|||||||||||| || || | || || || |||||||| ||| |||||||||| |||||
Sbjct 1182 TAAGCCATTGAAATGCAAACCTAGGGAACCTTTGAGAGTCAACGCAATGTTCCAACACAT 1241
Query 1349 TCAGAAGATGCTCTCTAGTGAAACCGCTGTGATTGCTGAAACCGGTGATTCTTGGTTCAA 1408
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1242 TCAGAAGATGCTCTCTAGTGAAACCGCTGTGATTGCTGAAACTGGTGATTCTTGGTTCAA 1301
Query 1409 TTGCCAAAAACTAAAGCTGCCAAAAGGATGTGGGTACGAGTTTCAGATGCAGTATGGATC 1468
|||||| || ||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 1302 TTGCCAGAAGCTAAAGCTGCCTAAAGGATGTGGGTATGAGTTTCAGATGCAGTATGGATC 1361
Query 1469 GATTGGGTGGTCTGTTGGTGCAACTCTAGGATACGCACAGGCATCACCAGAGAAGCGAGT 1528
||||| |||||||||||||| ||| ||||||| ||||||||||||||||||||| ||||
Sbjct 1362 AATTGGCTGGTCTGTTGGTGCGACTTTAGGATATGCACAGGCATCACCAGAGAAGAGAGT 1421
Query 1529 GTTGGCATTCATCGGTGATGGGAGTTTCCAAGTCACGGTTCAGGACATATCAACAATGCT 1588
|||| | |||||||| || |||||||||||||| || | |||||||||||| || ||| |
Sbjct 1422 GTTGTCTTTCATCGGAGACGGGAGTTTCCAAGTGACTGCTCAGGACATATCTACGATGAT 1481
Query 1589 GCGTAATGGACAGAAGACGATCATCTTCTTGATTAACAATGGTGGCTACACCATTGAAGT 1648
||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 1482 TCGTAACGGACAGAAGACGATCATCTTCTTGATTAACAACGGTGGCTACACCATAGAAGT 1541
Query 1649 AGAGATTCATGACGGTCCTTATAACGTGATTAAGAACTGGAACTACACTGGTCTCGTTGA 1708
||||||||||| |||||||| || ||||| ||||||||||||||||||||||| || ||
Sbjct 1542 GGAGATTCATGATGGTCCTTACAATGTGATCAAGAACTGGAACTACACTGGTCTTGTCGA 1601
Query 1709 CGCCATTCATAACGGTGAAGGCAATTGCTGGACTGCAAAGGTGAGATACGAAGAGGAGTT 1768
|| |||||||||||||||||||| |||||||| |||||||||||||||| ||||||||
Sbjct 1602 TGCTATTCATAACGGTGAAGGCAAATGCTGGACCACAAAGGTGAGATACGAGGAGGAGTT 1661
Query 1769 AGTGGAGGCGATTACGACAGCGACGAC-GGAGAAGAAAGATTGTCTATGTTTCATAGAAG 1827
|||||| ||||||| ||| ||||| | ||||||||||||| |||| |||||||| ||||
Sbjct 1662 AGTGGAAGCGATTAAGACCGCGAC-ATTGGAGAAGAAAGATAGTCTTTGTTTCATTGAAG 1720
Query 1828 TGATTCTTCACAAGGATGATACGAGCAAAGAGTTGCTTGAGTGGGGCTCACGCGTCTCTG 1887
||||| ||||||| ||||||||||||||||||||||||||||||||||| |||||| |||
Sbjct 1721 TGATTGTTCACAAAGATGATACGAGCAAAGAGTTGCTTGAGTGGGGCTCTCGCGTCGCTG 1780
Query 1888 CTGCTAACAGCCGTCCTCCCAATCCTCAGTAGAAG-AAGC-AACACAGAATCTT 1939
||||||| | |||||||||||||| ||||||||| ||| ||| | |||||||
Sbjct 1781 CTGCTAATGGTCGTCCTCCCAATCCCCAGTAGAAGCAAGAGAAC-C-GAATCTT 1832
> Ahg349471 jgi|Araly1|349471|fgenesh1_pg.C_scaffold_6000064
Length=1779
Score = 1995 bits (1080), Expect = 0.0
Identities = 1501/1705 (88%), Gaps = 26/1705 (2%)
Strand=Plus/Plus
Query 228 GCGACTCTCGGCCGTCACTTAGCTCGTCGTCTCGTCCAAGCCGGCGTTACG-GATGTTTT 286
||||||||||| ||||||||||| || ||||| ||||||||||| || | | ||| ||||
Sbjct 88 GCGACTCTCGGACGTCACTTAGCCCGCCGTCTTGTCCAAGCCGGAGTCA-GCGATATTTT 146
Query 287 CTCTGTTCCCGGAGATTTCAACCTCA-CTTTGCTTGATCACCTCATGGCTGAGCCGGACC 345
|||||||||||| ||||||||||| | || ||||||| || ||||| || || ||||| |
Sbjct 147 CTCTGTTCCCGGGGATTTCAACCT-ATCTCTGCTTGACCAGCTCATCGCCGACCCGGAGC 205
Query 346 TCAACCTA-ATCGGATGTTGTAACGAGCTAAACGCCGGTTACGCTGCCGACGGTTACGCT 404
|||| | | ||||| || || |||||||| ||||| || |||||||||||||||||||||
Sbjct 206 TCAA-CAACATCGGCTGCTGCAACGAGCTTAACGCTGGATACGCTGCCGACGGTTACGCT 264
Query 405 AGATCTCGTGGAGTCGGCGCTTGCGTTGTTACCTTCACCGTTGGTGGACTCAGCGTTTTA 464
||||||||||||| || ||||| || || || ||||||||||||||||||||||||||
Sbjct 265 CGATCTCGTGGAGTTGGTGCTTGTGTCGTGACTTTCACCGTTGGTGGACTCAGCGTTTTG 324
Query 465 AACGCGATCGCTGGTGCTTACAGCGAGAATCTTCCTCTTATCTGTATCGTCGGAGGTCCT 524
||||||||||||||||| ||||| |||||||| || | |||||||||||||||||||||
Sbjct 325 AACGCGATCGCTGGTGCATACAGTGAGAATCTGCCAGTGATCTGTATCGTCGGAGGTCCT 384
Query 525 AACTCTAACGA-TTATGGCACTAACCGGATTCTTCATCACACCATTGGATTACCTGATTT 583
||||| || || || |||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 385 AACTCCAATGACTT-TGGCACAAACCGGATTCTTCATCACACCATTGGTTTACCTGATTT 443
Query 584 TAGCCAAGAGCTTAGGTGCTTCCAAACGGTGACTTGTTATCAGGCGGTGGTGAA-CAATT 642
|||||||||||||||||| |||||||| || ||||| |||||||| |||||||| | |||
Sbjct 444 TAGCCAAGAGCTTAGGTGTTTCCAAACTGTTACTTGCTATCAGGCTGTGGTGAATC-ATT 502
Query 643 TAGATGATGCTCATGAACAGATTGATAAAGCAATATCAACAGCTTTGAAAGAGAGCAAGC 702
| || |||||||||||||| || || | || |||||||||||| ||||||| |||||||
Sbjct 503 TGGAGGATGCTCATGAACAAATCGACATGGCGATATCAACAGCTCTGAAAGAAAGCAAGC 562
Query 703 CTGTGTATATAAGTGTAAGCTGTAACTTAGCAGCGATTCCTCATCATACATTTAGC-CGT 761
||||||| || || || |||||||||||||| || | |||||||| ||||||| || |||
Sbjct 563 CTGTGTACATTAGCGTCAGCTGTAACTTAGCTGCAACTCCTCATCCTACATTT-GCTCGT 621
Query 762 GATCCTGTCCCTTTT-TCTCTAGCTCCAAGATTGAGCAACAAG-ATGGGTTTAGAAGCTG 819
|||||||||||||| | ||| ||||||| |||||||||||| || ||||||||||||
Sbjct 622 TATCCTGTCCCTTTTGAC-CTAACTCCAAGGTTGAGCAACAAGAAT-TGTTTAGAAGCTG 679
Query 820 CGGTGGAAGCAACATTGGAGTTTCTGAATAAGGCTGTGAAGCCAGTTATGGTTGGTGGTC 879
||||||||||||||||||||||||| || ||||| |||||||| || ||||| |||||||
Sbjct 680 CGGTGGAAGCAACATTGGAGTTTCTAAACAAGGCGGTGAAGCCCGTCATGGTCGGTGGTC 739
Query 880 CTAAGTTGCGTGTGGCTAAAGCTTGTGATGCCTTTGTTGAGCTAGCTGATGCTTCAGGCT 939
| ||||||||||||||||||||| | ||||||||||| ||||||||||||||||||||||
Sbjct 740 CCAAGTTGCGTGTGGCTAAAGCTAGGGATGCCTTTGTGGAGCTAGCTGATGCTTCAGGCT 799
Query 940 ATGCTTTGGCGA-TGATGCCTTCTGCGAAAGGCTTTGTACCAGAGCACCATCCTCATTTC 998
|| | |||| | ||||||| ||||| |||||||||||||||||| |||||||||| |||
Sbjct 800 ATCCCCTGGC-AGTGATGCCATCTGCAAAAGGCTTTGTACCAGAGGACCATCCTCACTTC 858
Query 999 ATTGGAACTTATTGGGGAGCAGTGAGCACTCCTTTT-TGCTCTGAGATTGTGGAATCTGC 1057
||||| ||||| ||||||||||||||||| |||||| ||| ||||||||| ||||||||
Sbjct 859 ATTGGTACTTACTGGGGAGCAGTGAGCAC-CCTTTTCTGCAATGAGATTGTCGAATCTGC 917
Query 1058 GGATGCTTACATTTTTGCAGGTCCAATCTTCAACGACTATAGCTCTGTTGGTTACTCGCT 1117
||||||||||||||| ||||||||||| ||||||||||| ||||| || |||||||| ||
Sbjct 918 GGATGCTTACATTTTCGCAGGTCCAATATTCAACGACTACAGCTCCGTGGGTTACTCACT 977
Query 1118 TCTCCTCAAGAAAGAAAAAGCCATCGTTGTGCAACCTGATCGTATCACTGTGGCCAATGG 1177
||||||||||||||||||||||||| ||||||| ||||| || || |||||| |||||
Sbjct 978 TCTCCTCAAGAAAGAAAAAGCCATCATTGTGCATCCTGACCGCGTCGTTGTGGCTAATGG 1037
Query 1178 TCCTACTTTTGGTTGCATTTTGATGAGCGATTTCTTCAGGGAATTGTCTAAGAGGGTGAA 1237
|||||| ||||||||| || ||||||||| ||||||||||| ||| |||||||||||||
Sbjct 1038 TCCTACGTTTGGTTGCGTTCGGATGAGCGAATTCTTCAGGGAGTTGGCTAAGAGGGTGAA 1097
Query 1238 GCGTAACGAGACTGCATATGAGAACTACCATAGGATCTTTGTCCCTGAAGGTAAGCCATT 1297
||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1098 ACGTAACGTGACGGCTTATGAGAACTACCATAGGATCTTTGTCCCTGAAGGTAAGCCATT 1157
Query 1298 GAAGTGTGAATCAAGAGAGCCAT-TGAGAGTTAACACAATGTTCCAGCACATTCAGAAGA 1356
||| || |||| |||||| | | ||||| | ||| |||||||||| |||||||||||||
Sbjct 1158 GAAATGCAAATCTAGAGAGGC-TCTGAGAATCAACGCAATGTTCCAACACATTCAGAAGA 1216
Query 1357 TGCTCTCTAGTGAAACCGCTGTGATTGCTGAAACCGGTGATTCTTGGTTCAATTGCCAAA 1416
|||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 1217 TGCTCTCTAGTGAAACTGCTGTGATTGCTGAAACTGGTGATTCTTGGTTCAATTGCCAGA 1276
Query 1417 AACTAAAGCTGCCAAAAGGATGTGGGTACGAGTTTCAGATGCAGTATGGATCGATTGGGT 1476
|||| | |||||| ||||||||||||||||||||||| |||||||||||||| ||||| |
Sbjct 1277 AACTTAGGCTGCCTAAAGGATGTGGGTACGAGTTTCAAATGCAGTATGGATCAATTGGTT 1336
Query 1477 GGTCTGTTGGTGCAACTCTAGGATACGCACAGGCATCACCAGAGAAGCGAGTGTTGGCAT 1536
||||||||||||| ||||||||||||||||| ||||||||| | || ||||||||| | |
Sbjct 1337 GGTCTGTTGGTGCGACTCTAGGATACGCACAAGCATCACCAAATAAACGAGTGTTGTCTT 1396
Query 1537 TCATCGGTGATGGGAGTTTCCAAGTCACGGTTCAGGACATATCAACAATGCTGCGTAATG 1596
||||||| || |||||||||||||| |||| ||||||| |||| || ||| | ||||| |
Sbjct 1397 TCATCGGAGACGGGAGTTTCCAAGTGACGGCTCAGGACGTATCCACGATGATTCGTAACG 1456
Query 1597 GACAGAAGACGATCATCTTCTTGATTAACAATGGTGGCTACACCATTGAAGTAGAGATTC 1656
|||||||||| ||||||||| |||||||||| |||||||||||||||||||| |||||||
Sbjct 1457 GACAGAAGACTATCATCTTCCTGATTAACAACGGTGGCTACACCATTGAAGTTGAGATTC 1516
Query 1657 ATGACGGTCCTTATAACGTGATTAAGAACTGGAACTACACTGGTCTCGTTGACGCCATTC 1716
|||| |||||||| || ||||| ||||||||||||||||||||||| || || |||||||
Sbjct 1517 ATGATGGTCCTTACAATGTGATCAAGAACTGGAACTACACTGGTCTTGTCGATGCCATTC 1576
Query 1717 ATAACGGTGAAGGCAATTGCTGGACTGCAAAGGTGAGATACGAAGAGGAGTTAGTGGAGG 1776
|||||||||||||||| |||||||| |||||||||||||||| |||||||||||||| |
Sbjct 1577 ATAACGGTGAAGGCAAATGCTGGACCACAAAGGTGAGATACGAGGAGGAGTTAGTGGAAG 1636
Query 1777 CGATTA-CGACAGCGACGA-CGGAGAAGAAAGATTGTCTATGTTTCATAGAAGTGATTCT 1834
|||||| | ||||| || | |||||||||||||| |||| |||||||| ||||||||| |
Sbjct 1637 CGATTAAC-ACAGCTAC-ATCGGAGAAGAAAGATAGTCTTTGTTTCATTGAAGTGATTGT 1694
Query 1835 TCACAAGGATGATACGAGCAAAGAGTTGCTTGAGTGGGGCTCACGCGTCTCTGCTGCTAA 1894
|||||| ||||||||||||||||||||||||||||||||||| ||| |||| ||||||||
Sbjct 1695 TCACAAAGATGATACGAGCAAAGAGTTGCTTGAGTGGGGCTCTCGCATCTCAGCTGCTAA 1754
Query 1895 CAGCCGTCCTCCCAATCCTCAGTAG 1919
| |||||||||||||||||||||
Sbjct 1755 TGGTCGTCCTCCCAATCCTCAGTAG 1779
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80865590135
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5