BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G33100.1

Length=595
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg944623 jgi|Araly1|944623|scaffold_700852.1                        477    4e-134


> Ahg944623 jgi|Araly1|944623|scaffold_700852.1
Length=317

 Score =  477 bits (258),  Expect = 4e-134
 Identities = 286/299 (96%), Gaps = 3/299 (1%)
 Strand=Plus/Plus

Query  170  ATGGGCTTATTGAAGAAAAAAGATTCAACTTCAGCTCGCTCCTCTACTTCTCCCTGCGCC  229
            |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  21   ATGGGCTTATTGAAGAAAAAAGATTCAACTTCAGCTCGCTCCTCTACTTCCCCCTGCGCC  80

Query  230  GATTTGCGAAACGCTTACCACAATTGCTTCAACAAATGGTACTCGGAGAAGTTTGTTAAA  289
            |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  81   GATTTGAGAAACGCTTACCACAATTGCTTCAACAAATGGTACTCGGAGAAGTTTGTTAAA  140

Query  290  GGCCAATGGGATAAAGAAGAGTGTGTTGCCGAGTGGAAAAAATACAGAGACTGTCTCTCG  349
            |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct  141  GGCCAATGGGATAAAGAAGAGTGTGTTGTCGAGTGGAAAAAGTACAGAGACTGTCTCTCG  200

Query  350  GAGAATTTAGATGGTAAGCTTCTCACTCGCATTTTGGAGGTAGATGGGGAGCTGAATCCA  409
            |||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct  201  GAGAATTTAGATGGCAAGCTTCTCACTCGCATTTTGGAAGTAGATGGTGAGCTGAATCCA  260

Query  410  ACAAAGCAAGCTACTGATTCAAAAGAATCCAGTTCATGATACTTGATCCCCATGTTTTT  468
            ||||||||||||   ||||| |||||||| ||||||||||||||||| |||||||||||
Sbjct  261  ACAAAGCAAGCT---GATTCTAAAGAATCTAGTTCATGATACTTGATTCCCATGTTTTT  316



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21786841319


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5