BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G33100.1 Length=595 Score E Sequences producing significant alignments: (Bits) Value Ahg944623 jgi|Araly1|944623|scaffold_700852.1 477 4e-134 > Ahg944623 jgi|Araly1|944623|scaffold_700852.1 Length=317 Score = 477 bits (258), Expect = 4e-134 Identities = 286/299 (96%), Gaps = 3/299 (1%) Strand=Plus/Plus Query 170 ATGGGCTTATTGAAGAAAAAAGATTCAACTTCAGCTCGCTCCTCTACTTCTCCCTGCGCC 229 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 21 ATGGGCTTATTGAAGAAAAAAGATTCAACTTCAGCTCGCTCCTCTACTTCCCCCTGCGCC 80 Query 230 GATTTGCGAAACGCTTACCACAATTGCTTCAACAAATGGTACTCGGAGAAGTTTGTTAAA 289 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 81 GATTTGAGAAACGCTTACCACAATTGCTTCAACAAATGGTACTCGGAGAAGTTTGTTAAA 140 Query 290 GGCCAATGGGATAAAGAAGAGTGTGTTGCCGAGTGGAAAAAATACAGAGACTGTCTCTCG 349 |||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| Sbjct 141 GGCCAATGGGATAAAGAAGAGTGTGTTGTCGAGTGGAAAAAGTACAGAGACTGTCTCTCG 200 Query 350 GAGAATTTAGATGGTAAGCTTCTCACTCGCATTTTGGAGGTAGATGGGGAGCTGAATCCA 409 |||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||| Sbjct 201 GAGAATTTAGATGGCAAGCTTCTCACTCGCATTTTGGAAGTAGATGGTGAGCTGAATCCA 260 Query 410 ACAAAGCAAGCTACTGATTCAAAAGAATCCAGTTCATGATACTTGATCCCCATGTTTTT 468 |||||||||||| ||||| |||||||| ||||||||||||||||| ||||||||||| Sbjct 261 ACAAAGCAAGCT---GATTCTAAAGAATCTAGTTCATGATACTTGATTCCCATGTTTTT 316 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 21786841319 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5