BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G33110.1
Length=1324
Score E
Sequences producing significant alignments: (Bits) Value
Ahg944622 jgi|Araly1|944622|scaffold_700851.1 1738 0.0
Ahg894049 jgi|Araly1|894049|Al_scaffold_0006_2045 409 3e-113
Ahg890727 jgi|Araly1|890727|Al_scaffold_0007_2713 409 3e-113
> Ahg944622 jgi|Araly1|944622|scaffold_700851.1
Length=1110
Score = 1738 bits (941), Expect = 0.0
Identities = 1045/1095 (95%), Gaps = 8/1095 (1%)
Strand=Plus/Plus
Query 82 GATGGAGAAGATTATTGACGTAGCTTATGGCGCATCAGTGAAGGTGGGTTTGACGTTGTT 141
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 22 GATGGAGAAGATTATTGACGTAGCTTATGGCGCATCAGTGAAGGCGGTTTTGACGTTGTT 81
Query 142 GGAGATGAATCTGTTGCCGGATATTGTCATTAGGCGGCTCACACGTCTGCTTCTGGCCGG 201
||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 82 GGAGAAGAATCTGTTGCCGGATCTTGTCATTAGGCGGCTCACACGTCTGCTTCTGGCCGG 141
Query 202 TCGTCTCCGTTCCGGTTACAAACCCACGGCGGAGATGCAACTCTCCGATCTCCTCCGTTT 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 142 TCGTCTCCGTTCCGGTTACAAACCCACGGCGGAGATGCAACTCTCCGATCTCCTCGGTTT 201
Query 262 TGTTGACTCTATAAAGAAGATGCCTATAGCTATCCATACCGAGAAGCCAAAGACTCAACA 321
|||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 202 TGTTGAATCTATAAAGAAGATGCCTATAGCTATCAATACCGAGAAGCCAAAGACTCAACA 261
Query 322 CTATGAATTACCGACAGCTTTCTTCGAACTTGTCCTTGGAAGAAACATGAAGTACAGCTC 381
|||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 262 CTATGAATTACCAACAGCTTTCTTCGAACTTGTTCTTGGAAGAAACATGAAATACAGCTC 321
Query 382 TTGTTACTTCTCAAACGATTCAAGTAGCTTAGAAGATGCAGAGGAAGCAATTTTGGCTCT 441
||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct 322 TTGTTACTTCTCAAACGATTCAACTAGCTTAGAAGATGCAGAGGAAGCTATTTTGGCTCT 381
Query 442 TTATTGTGAAAGAGCTAAAGTGGAAGATGGTCAAAGTGTTCTTGATATCGGATGTGGCTG 501
|||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 382 TTATTGTGAAAGAGCTAAAGTGGAAGATGGACAAAGTGTTCTTGATGTCGGATGTGGCTG 441
Query 502 GGGATCCTTGTCTTTGTACATTGCACGCAAGTACAGCAAATGCAAGTTAACCGGTATCTG 561
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 442 GGGATCTTTGTCTTTGTACATTGCCCGCAAGTACAGCAAATGCAAGTTAACCGGTATTTG 501
Query 562 CAACTCCAAAACGCAGAAAGCATTTATCGATGAGAAATGCCGGAAACTCGGGCTTCAGAA 621
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 502 CAACTCAAAAACACAGAAAGCATTTATCGATGAGAAATGCCGGAAACTCGGGCTTCAGAA 561
Query 622 TATCGAAATCATTGTCGCGGATATTAGCACTTTTGAGCATGAAGGGACATACGATCGGA- 680
||||||||| ||||| ||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 562 TATCGAAATTATTGTTGCGGATATTAGCACTTTTGAGCATGAAAGGACATACGATC-GAG 620
Query 681 TATTCTCCATCGAGATGTTTGAGCATATGAAAAACTATGGAGAGCTACTAAAGAAGATAG 740
||||||||||||| ||||| ||||| ||||||||||| ||||||||||| ||||||||||
Sbjct 621 TATTCTCCATCGAAATGTTCGAGCACATGAAAAACTACGGAGAGCTACTGAAGAAGATAG 680
Query 741 GAAAGTGGATGAAGGAAGATAGTCTTCTGTTTGTTCACTATTTCTGCCATAAGACATTTG 800
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 681 GAAAGTGGATGAAGGAAGATAGTCTTCTGTTTGTTCACTATTTCTGCCATAAGACATTTG 740
Query 801 CTTACCACTTTGAGGATGTGAATGACGATGACTGGATCACAAGACACTTCTTCAGCGGAG 860
||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct 741 CTTACCACTTTGAGGATGTGAATGACGATGACTGGATCACACGACACTTTTTCAGCGGAG 800
Query 861 GAACAATGCCATCAGC-AGATCTTCTGCTATATTTTCAAGAAAATGTTTCGATTGTGGAT 919
|||||||||||||||| | ||||||| |||||||| ||||||||||||||||||||||||
Sbjct 801 GAACAATGCCATCAGCCA-ATCTTCTCCTATATTTCCAAGAAAATGTTTCGATTGTGGAT 859
Query 920 CATTGGCTCGTAAGCGGGACGCATTATGCAAAAACAAGTGAAGAGTGGCTAAAAAGAATG 979
||||||||| ||| ||||| |||||||||||| ||||||||||||||||| |||||||||
Sbjct 860 CATTGGCTCATAAACGGGAAGCATTATGCAAAGACAAGTGAAGAGTGGCTCAAAAGAATG 919
Query 980 GATAAGGAGATAGTTGCAGTaaaaaaaaTCATGGAAGTGACTTATGGGAAAGAAGAAGCA 1039
|||||||||||||||||| ||||| | || ||||||||||| ||||||||||||||||||
Sbjct 920 GATAAGGAGATAGTTGCAATAAAAGAGATAATGGAAGTGACATATGGGAAAGAAGAAGCA 979
Query 1040 GTGAAGTGGATGGTTTACTGGAGAACCTTCTTCATCGCGGTTGCTGAGCTTTTCGGATAC 1099
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 980 GTGAAGTGGATGGTTTACTGGAGAACCTTCTTCATCGCAGTTGCTGAGCTTTTCGGATAC 1039
Query 1100 AACAATGGAGAAGAGTGGATGGTTGCACACTTCCTCTTCAAGAAGAAATGATGATGATTT 1159
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1040 AACAATGGAGAAGAGTGGATGGTTGCACACTTCCTCTTCAAGAAGAAATGATGAT--TT- 1096
Query 1160 CTTTATTTTTCTTCC 1174
||||||||| |||||
Sbjct 1097 CTTTATTTT-CTTCC 1110
> Ahg894049 jgi|Araly1|894049|Al_scaffold_0006_2045
Length=267
Score = 409 bits (221), Expect = 3e-113
Identities = 245/257 (95%), Gaps = 0/257 (0%)
Strand=Plus/Plus
Query 894 TTCAAGAAAATGTTTCGATTGTGGATCATTGGCTCGTAAGCGGGACGCATTATGCAAAAA 953
|||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 11 TTCAGGAAAATGTTTCGATTGTGGATCATTGGCTCGTAAACGGGACGCATTATGCAAAGA 70
Query 954 CAAGTGAAGAGTGGCTAAAAAGAATGGATAAGGAGATAGTTGCAGTaaaaaaaaTCATGG 1013
|||||||||||||| | ||||||||||||||||||||||||||| ||||| | || ||||
Sbjct 71 CAAGTGAAGAGTGGGTCAAAAGAATGGATAAGGAGATAGTTGCAATAAAAGAGATAATGG 130
Query 1014 AAGTGACTTATGGGAAAGAAGAAGCAGTGAAGTGGATGGTTTACTGGAGAACCTTCTTCA 1073
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 131 AAGTGACATATGGGAAAGAAGAAGCAGTGAAGTGGATGGTTTACTGGAGAACCTTCTTCA 190
Query 1074 TCGCGGTTGCTGAGCTTTTCGGATACAACAATGGAGAAGAGTGGATGGTTGCACACTTCC 1133
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 191 TCGCGGTAGCTGAGCTTTTCGGGTACAACAATGGAGAAGAGTGGATGGTTGCACACTTCC 250
Query 1134 TCTTCAAGAAGAAATGA 1150
|||||||||||||||||
Sbjct 251 TCTTCAAGAAGAAATGA 267
> Ahg890727 jgi|Araly1|890727|Al_scaffold_0007_2713
Length=267
Score = 409 bits (221), Expect = 3e-113
Identities = 245/257 (95%), Gaps = 0/257 (0%)
Strand=Plus/Plus
Query 894 TTCAAGAAAATGTTTCGATTGTGGATCATTGGCTCGTAAGCGGGACGCATTATGCAAAAA 953
|||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 11 TTCAGGAAAATGTTTCGATTGTGGATCATTGGCTCGTAAACGGGACGCATTATGCAAAGA 70
Query 954 CAAGTGAAGAGTGGCTAAAAAGAATGGATAAGGAGATAGTTGCAGTaaaaaaaaTCATGG 1013
|||||||||||||||| ||||||||||| ||||||||||||||| ||||| | || ||||
Sbjct 71 CAAGTGAAGAGTGGCTCAAAAGAATGGACAAGGAGATAGTTGCAATAAAAGAGATAATGG 130
Query 1014 AAGTGACTTATGGGAAAGAAGAAGCAGTGAAGTGGATGGTTTACTGGAGAACCTTCTTCA 1073
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 131 AAGTGACATATGGGAAAGAAGAAGCAGTGAAGTGGATGGTTTACTGGAGAACCTTCTTCA 190
Query 1074 TCGCGGTTGCTGAGCTTTTCGGATACAACAATGGAGAAGAGTGGATGGTTGCACACTTCC 1133
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 191 TCGCGGTAGCTGAGCTTTTCGGGTACAACAATGGAGAAGAGTGGATGGTTGCACACTTCC 250
Query 1134 TCTTCAAGAAGAAATGA 1150
|||||||||||||||||
Sbjct 251 TCTTCAAGAAGAAATGA 267
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49521669183
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5