BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G33130.1
Length=1159
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491374 jgi|Araly1|491374|fgenesh2_kg.7__807__AT4G33130.1 1258 0.0
> Ahg491374 jgi|Araly1|491374|fgenesh2_kg.7__807__AT4G33130.1
Length=943
Score = 1258 bits (681), Expect = 0.0
Identities = 878/964 (91%), Gaps = 50/964 (5%)
Strand=Plus/Plus
Query 85 TCCGTGACA-AACGATGCTCTGTATCAAAGCCGAAGCTCTTCATGAAGATCAAAACCTT- 142
||||||| | ||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1 TCCGTGA-AGAACAATGCTCTGTATCAAAGCCGAAGCTCTTCATGAAGATCAAAA-CTTA 58
Query 143 G-CT--TCCTCTTCTTCTTCTCCTAGCACCGATCGCACCTTCGGAAATGCCACTTTTCGT 199
| || || |||||||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct 59 GCCTCCTCTTCTTCTTCTTCTCCCAGCACCGATCGCAGCTTCGGAAATGCCACTTTTCGT 118
Query 200 CTTCCCATCAATTGGGGAAGCTCGATCCGGAGATATCTGAAGAAGACTGGTACATTCTCG 259
|||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 119 CTTCCCATCAATTGGGGAAGCTCGATCCGGAGGTATTTGAAGAAGACTGGTACATTCTCG 178
Query 260 AGAAGATCTTACTCTTCTGGTGATGGCTCTTTGTTTTTTCCTGATCTCGAT---GAAAGC 316
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 179 AGAAGATCTTACTCTTCTGGTGATGGCTCTTTGTTTTTTCCTCATCTCGATCAGGAAAGC 238
Query 317 AAGATGATTGATCAAACTAGTGGTAGATTTGATGGAAAGACCAAACTATGGTACAAATGT 376
|||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 239 AAGATGCTTGATCAAACTAGGGGTAGATTTGATGGAAAGACCAAACTATGGTACAAATGT 298
Query 377 GAGCTTGAACAAGATATTAAGAGATTGCAGCAGCAGTTACAAGAGGAGATTAACTTACGG 436
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 299 GAGCTTGAACAAGATATTAAGAGATTGCAGCAGCAATTACAAGAGGAGATTAACTTACGG 358
Query 437 TTAGCTCTAACTAGCGCAGTTGAGCATTCTAGTTCACCGTTTATGGATTCGCCTTGTGAA 496
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| ||
Sbjct 359 TTAGCTCTAACTAGCGCAGTTGAGCATTCTAGTTCCCCGTTCATGGATTCGCCTTGTCAA 418
Query 497 CTTCCTGATAAGGCACAGGAGCTTTTGGATAGCTTAGCAATATTGGAAATCACGGTGTCA 556
||||||||| | |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 419 CTTCCTGAT-----A-AGGAGCTTTTGGATAGCTTAGCAATACTGGAAATCACGGTGTCA 472
Query 557 AAGCTTGAGCAAGAATCAGTTTCCTTGAGATATCTACTTAGGCAAGAGAAAAACGAGCGG 616
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 473 AAGCTTGAGCAAGAATCAGTTTCCTTGAGATATCTACTTAGGCAAGAGAAAAACGAGCGG 532
Query 617 CGTCTCTCTGAGATTCTACAAAAGAAGTCTCATTATTCTGCTCCTTCAAAGTTCACTAAT 676
|| |||||||||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 533 CGCCTCTCTGAGATTCTACAAAAGAAGGCTCATTATTCTGCTCCCTCAAAGTTCACTAAT 592
Query 677 GCTCAAAATTTCCCTAACAAGTCGGTGACGAGGAAAAGAGAGAGTAAACAAGTGGATTCT 736
|||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct 593 GCTCAAAATTTCCCTAACAAGTTGGTGACAAGGAAAAGAGAGAGTAAACAAGTGGATTCT 652
Query 737 TTGGATAGTGAAGCTTTGCAAGTAGAATGAAGAAGCAAAGAGTTATTATGTGATCTTAGG 796
|||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct 653 GTGGAGAGTGAAGCTTTACAAGTAGAATGAAGAAGCAAAGAGTGATTATGTGATCTTAGG 712
Query 797 GATAGCCATATTGGCTGGAGAGATCAAC-CCATGGGCAAACTCTTTCTCCTCT-A----A 850
|||||||||||||||| | ||||| ||||| |||||||||||||||||| | |
Sbjct 713 CATAGCCATATTGGCTG-A----TCAACTCCATGAGCAAACTCTTTCTCCTCTGAGTCTA 767
Query 851 ----TTTTAGAATCACCTTTCAGACTCACCGAGCTGGTCCCTGAGCATCTATTCA--ATA 904
|||||||| | ||||||||||||||| ||||||||| ||||||||| |||| |||
Sbjct 768 AGAGTTTTAGAACCGCCTTTCAGACTCACCTAGCTGGTCCATGAGCATCTCTTCATTATA 827
Query 905 A-GAACTCTGAGATCTTAGAAAGATACAC-----TA--A-GGGGTAAGGTTGATAGGACG 955
| || |||||||||||||||||||||||| | | |||||||||||||||||| |
Sbjct 828 AAGA-CTCTGAGATCTTAGAAAGATACACAGCGCTTTTATGGGGTAAGGTTGATAGGATG 886
Query 956 GGTTATGCCCTGCAGGAGGAGCTGCAGTGAGGAGCTTAATTGTATTCTGCATCTAAGCAT 1015
| |||||||||||||||| ||| |||||||||||| ||||||||||| ||| |||
Sbjct 887 GTTTATGCCCTGCAGGAGCAGC---AGTGAGGAGCTT----GTATTCTGCATTTAAACAT 939
Query 1016 AGAA 1019
||||
Sbjct 940 AGAA 943
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43231387878
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5