BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G33140.1
Length=1521
Score E
Sequences producing significant alignments: (Bits) Value
Ahg888778 jgi|Araly1|888778|Al_scaffold_0007_764 1528 0.0
> Ahg888778 jgi|Araly1|888778|Al_scaffold_0007_764
Length=1059
Score = 1528 bits (827), Expect = 0.0
Identities = 1002/1079 (93%), Gaps = 41/1079 (4%)
Strand=Plus/Plus
Query 244 ATGTTAAAGAGGCACTCTATCGCCATTCTCTCCAGAATCGCAAG---CTTCGATTC-C-- 297
||||||||||||||||||| ||||||||||| ||||||||| || ||||||||| |
Sbjct 1 ATGTTAAAGAGGCACTCTAACGCCATTCTCTTCAGAATCGCCAGCTTCTTCGATTCACAT 60
Query 298 CATAAAACCC---TTATGTCTTCCTTTACCGATCCCCTTTTTCTGCGATCGCTTTACTCT 354
|||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 61 CATAAAACCCTTTTTATGTCTTCCTTTACCGATCCCCTTTTTCTGCGATCGCTTCACACT 120
Query 355 CCTCGATCCATCGCCATCAGATTTCATGGAGAT-----TTT-GCTCATAGACTCTACAAT 408
|||||||||||||||| || ||||||||||||| ||| | |||||||||| || |
Sbjct 121 CCTCGATCCATCGCCAACACATTTCATGGAGATGGAGATTTCGTTCATAGACTC-AC--T 177
Query 409 CCCATTCAAATTTacaacaacaacaacaacaacaGTGGCTCTTGTAATGGTTTGTTCAAG 468
||||||||||||||| |||| |||||||||| ||| | ||| ||||||||||||||||
Sbjct 178 CCCATTCAAATTTACCTCAACCACAACAACAAGAGT--CGCTT-TAATGGTTTGTTCAAG 234
Query 469 GTTAAAGGTGGAGGAGGAAAGCCGAAAGGATTCACCTTG-CGAA---GTTGTTTTGATTC 524
|||||||||||||||| ||||| || |||||||||||| | || |||||||||||||
Sbjct 235 GTTAAAGGTGGAGGAGTTAAGCCCAATGGATTCACCTTGAC-AAGTTGTTGTTTTGATTC 293
Query 525 TCATAAGAAACCTGATCAAAAGGCTCGAGCTTTAACTCAACATCGCCGCTTTCTCCATGA 584
||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 294 TCACAAGAACCCTGATCAAAAGGCTCGAGCTTTAACTCAACATCGCCGCCTTCTCCATGA 353
Query 585 TCTGGGATCTGGGCCTAGTGAAGAACGCGCCGCTGCCGGAACTACCGACCTTGCCGATGG 644
||| ||||||||||| | | | ||||||||| ||||||||||| |||||
Sbjct 354 TCTCGGATCTGGGCC---T-----A------G-TGCCGGAACCACCGACCTTGCAGATGG 398
Query 645 CCGTGGTGCATATCTGCGTACGAGGTTTCAAGGAAATGATAAGATTGTTGTGGCTGTTGA 704
||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 399 CCGTGGTGCATATCTGCGTACCAGGTTTCGAGGAAATGATAAGATTGTTGTGGCTGTTGA 458
Query 705 CATAGATGAGGTTCTTGGAAACTTTGTCTCGGCCCTTAACAGATTCATTGCGGACCGCTA 764
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 459 CATTGATGAGGTTCTTGGAAACTTTGTCTCGGCCCTTAACAGATTCATTGCGGACCGCTA 518
Query 765 TTTGTCGAACCATTCAGTCTCAGAATACCATGTCTATGAGTTCTTCAAGATATGGAACTG 824
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 TTTGTCTAACCATTCAGTCTCAGAATACCATGTCTATGAGTTCTTCAAGATATGGAACTG 578
Query 825 CTCTCGCAACGAAGCCGACTTACGTGTTCATGAATTCTTTAAGACATCATATTTCAAGAA 884
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 579 CTCTCGCAACGAAGCCGACTTACGTGTTCATGAATTCTTTAAGACATCATATTTCAAGAA 638
Query 885 AGGGATCCATCCTCTTCCAGGTGCCCATAAGACTCTTCACAAGCTATCAAAATATTGCGA 944
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 639 AGGGATCCATCCTCTTCCAGGTGCCCATAAGACTCTTCACAAGCTATCAAAATATTGCGA 698
Query 945 CATGTCAGTTGTGACGTCCCGGCAGAATGCGATAAAGGAGCACACACTTGAGTGGATCGA 1004
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 699 CATGTCAGTTGTGACGTCCCGGCAGAATGCGATAAAGGAGCACACACTTGAGTGGATCGA 758
Query 1005 GATACATTTCCCGGGACTATTTAAACAGATTCATTTTGGGAACCATTTTGCTCTTCATGG 1064
|||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 759 GATACATTTCCCAGGACTATTTAAACAAATTCATTTTGGAAACCATTTTGCTCTTCATGG 818
Query 1065 AGAGTCTAGACCAAAGTCTGAAATCTGCAGATCATTTGGAGCAGAGATATTGATTGACGA 1124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 819 AGAGTCTAGACCAAAGTCTGAAATCTGCAGATCATTTGGAGCAGAGATATTGATTGACGA 878
Query 1125 TAACCCAAGATATGCCGAGGAATGCGCTAACATTGGAATGAAGGTTCTCCTCTTTGACTA 1184
|||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 879 TAACCCGAGATATGCCGAGGAATGCGCTAACATCGGAATGAAGGTTCTTCTCTTTGACTA 938
Query 1185 TGAAAATTCATACCCTTGGTCTAAGACAGAGTCTGTGGATCGGCATCCTTTGGTGACTAG 1244
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 939 TGAAAATTCATACCCTTGGTCTAAGACAGAGTCTGTGGATAGGCATCCTTTGGTGACTAG 998
Query 1245 AGTTCATAATTGGGAAGAGGTGGAGCAGCAGATTCTCTCATTGGCAGTGTCAAAGTGTT 1303
||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 999 AGTTCATAACTGGGAAGAGGTGGAGCAGCAGATTCTCTCATTGGCAGTGTCAAAATGTT 1057
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56944916275
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5