BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G33145.1

Length=422
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg931876 jgi|Araly1|931876|scaffold_304333.1                        270    5e-72


> Ahg931876 jgi|Araly1|931876|scaffold_304333.1
Length=244

 Score =  270 bits (146),  Expect = 5e-72
 Identities = 198/222 (89%), Gaps = 7/222 (3%)
 Strand=Plus/Plus

Query  108  TCAAGAGTTAAAACGT-AAAATGGACAAG--A-ATGTCAGCGCAAAAGCTAGTTCGGTAG  163
            ||||||||| |||||| ||||||||||||  | |||| ||||||||||||||||||||||
Sbjct  4    TCAAGAGTTGAAACGTAAAAATGGACAAGAAAGATGTTAGCGCAAAAGCTAGTTCGGTAG  63

Query  164  CTCAGAGCAGCGGT---TCAAGCAGTGGCACTGCTCCTGGTGCAGGCAATATGGTTGCGC  220
            ||||||||||| ||    ||||||||||||||||||||||| | || |||||||||||||
Sbjct  64   CTCAGAGCAGCAGTACCCCAAGCAGTGGCACTGCTCCTGGTCCTGGGAATATGGTTGCGC  123

Query  221  CCGGTTCTGGAGGTTCTGCGCAGATCCCTAGAGCTGCTTTTGAGGCCAACTCTAAGGCTT  280
            |||||||||| |||||| | || |||||||||| ||||||||||||||||||||||||||
Sbjct  124  CCGGTTCTGGTGGTTCTACTCATATCCCTAGAGATGCTTTTGAGGCCAACTCTAAGGCTT  183

Query  281  ATTTTGACAATCTTCATGCCAAGGAGAAGGCAAATAAGTGAA  322
            | ||||||||||| |||||||| |  ||||||||||||||||
Sbjct  184  ACTTTGACAATCTCCATGCCAAAGTCAAGGCAAATAAGTGAA  225



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15185924422


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5