BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G33145.1 Length=422 Score E Sequences producing significant alignments: (Bits) Value Ahg931876 jgi|Araly1|931876|scaffold_304333.1 270 5e-72 > Ahg931876 jgi|Araly1|931876|scaffold_304333.1 Length=244 Score = 270 bits (146), Expect = 5e-72 Identities = 198/222 (89%), Gaps = 7/222 (3%) Strand=Plus/Plus Query 108 TCAAGAGTTAAAACGT-AAAATGGACAAG--A-ATGTCAGCGCAAAAGCTAGTTCGGTAG 163 ||||||||| |||||| |||||||||||| | |||| |||||||||||||||||||||| Sbjct 4 TCAAGAGTTGAAACGTAAAAATGGACAAGAAAGATGTTAGCGCAAAAGCTAGTTCGGTAG 63 Query 164 CTCAGAGCAGCGGT---TCAAGCAGTGGCACTGCTCCTGGTGCAGGCAATATGGTTGCGC 220 ||||||||||| || ||||||||||||||||||||||| | || ||||||||||||| Sbjct 64 CTCAGAGCAGCAGTACCCCAAGCAGTGGCACTGCTCCTGGTCCTGGGAATATGGTTGCGC 123 Query 221 CCGGTTCTGGAGGTTCTGCGCAGATCCCTAGAGCTGCTTTTGAGGCCAACTCTAAGGCTT 280 |||||||||| |||||| | || |||||||||| |||||||||||||||||||||||||| Sbjct 124 CCGGTTCTGGTGGTTCTACTCATATCCCTAGAGATGCTTTTGAGGCCAACTCTAAGGCTT 183 Query 281 ATTTTGACAATCTTCATGCCAAGGAGAAGGCAAATAAGTGAA 322 | ||||||||||| |||||||| | |||||||||||||||| Sbjct 184 ACTTTGACAATCTCCATGCCAAAGTCAAGGCAAATAAGTGAA 225 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 15185924422 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5