BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G33160.1
Length=1567
Score E
Sequences producing significant alignments: (Bits) Value
Ahg944616 jgi|Araly1|944616|scaffold_700845.1 1777 0.0
> Ahg944616 jgi|Araly1|944616|scaffold_700845.1
Length=1302
Score = 1777 bits (962), Expect = 0.0
Identities = 1169/1269 (92%), Gaps = 14/1269 (1%)
Strand=Plus/Plus
Query 192 ATGGGATTCTCAACTGGGAAAAGAAAATCAAGAGATGAAGAAGA-AGATAGAGTGAGCTT 250
|||||||||||| |||||||||||||||| |||| |||||||| | | | || ||||||
Sbjct 21 ATGGGATTCTCAGCTGGGAAAAGAAAATCTCGAGAAGAAGAAGATACA-ACAGCGAGCTT 79
Query 251 CTTCGCTTCTGAATTCCCCATGGATGACCTCAACGATGACGTTCTCGAGAGAGTCCTCTC 310
||| |||||||||||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct 80 CTTAGCTTCTGAATTCCCCATGGATGACCTCAGCGATGACGTCCTCGAGAGAGTCCTCTC 139
Query 311 ATGGCTACCAACTTCTTGCTTCTTTCGTATGAGCTCTGTTTGCAAAAGATGGAAATCAAG 370
||||||||| ||||||| ||||| |||||||||||||| ||||| ||||||||||||||
Sbjct 140 ATGGCTACCTCCTTCTTGTTTCTTCCGTATGAGCTCTGTCTGCAAGAGATGGAAATCAAG 199
Query 371 CCAAACCTCGAAAAGCTTCAAGCTTGCTTGCTCTCAAATCCCTACTCGAGATCCTTGGTT 430
|||| |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 200 CCAATCCTCAAAAAGCTTCGAGCTTGCTTGCTCTCAAATCCCTACTCGAGATCCTTGGTT 259
Query 431 CTTCATGATCGACAACGATTCCAATTCTTCCTCCTTCGTTTTCGACTCCACTGAGAACTC 490
|||||||||| | ||||||||| ||||||| ||||||||||||||||||||||||||| |
Sbjct 260 CTTCATGATCCATAACGATTCCCATTCTTCGTCCTTCGTTTTCGACTCCACTGAGAACAC 319
Query 491 CTGGAAAAATCTCAACCGCCGCGATTTCCTCCACCACCACCGTCAAGATTTCATCCCCGT 550
||||||||| |||| ||||||||||||||||||||||| ||| | ||||||||||||||
Sbjct 320 CTGGAAAAACCTCAGCCGCCGCGATTTCCTCCACCACCGCCGCCGCGATTTCATCCCCGT 379
Query 551 CGCTTCTTCCGGCGGCTTGCTCTGTTACCGCTGCTCCATCTCCGGCGACTTCCTCCTCCG 610
|||||| ||||||||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 380 CGCTTCCTCCGGCGGCTTGCTCTGTTTCCGCTGCTCCATCTCCGGCGAATTCCTCCTCCG 439
Query 611 TAATCCACTCACTGGATCTTCTCGTGACATTCCTTCTC-AAGATAACAACA-ACA-ACAA 667
|||||| ||||||||||||||||| ||||||||||||| || | ||| | | ||||
Sbjct 440 TAATCCCCTCACTGGATCTTCTCGCGACATTCCTTCTCCAATCTCTCAAGATAGTGACAA 499
Query 668 ACCTCTCCAAGCCGTAGCCATGACCACCACTACTGTTACTCCCTCCAGCTATACGCTCGT 727
|||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 500 ACCTCTCCAAGCTGTAGCCATGACCACCACCACTGTTACTCCCTCCAGCTATAAGCTCGT 559
Query 728 TACCATCTCCGGTGAAATCCCAAATCTCAGTTTCAAGATCTACGAATCAAACGCAGATTC 787
||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 560 TACCATCTCCGGTGAAATCCCAAATCTCAGTTTTAAGATCTACGAATCAAACTCAGATTC 619
Query 788 TTGGAGCAAAGACCAAGAACTGGAATCAGTCAAGAACAATGATTCATCATTACATGATGA 847
|||||||||||||||||| |||||| || |||||||| |||||||||||||||||||||
Sbjct 620 ATGGAGCAAAGACCAAGAATTGGAATTAGCCAAGAACACTGATTCATCATTACATGATGA 679
Query 848 TTATGATACTGACAGTGGCACAGTCTACTTTCTTAGCAA-ACAAGGAAACGTTGTCG-TG 905
|| ||||||||||| ||||||||||||||| |||||||| || ||||| ||||| | |
Sbjct 680 TTCTGATACTGACATTGGCACAGTCTACTTCCTTAGCAAGACT-GGAAATGTTGT-GATT 737
Query 906 GCGAGTAACAA---TCTTCAGAGAAGTCCGTCGAAGCAATACTCTTCCGTTATTACCGTT 962
||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 738 GCGAGTAACAACAATCTTCAGAGAAGTCCATCGAAGCAATACTCTTCCGTTATTACCGTT 797
Query 963 ACAGATGAAGCCGAAATCGTCTATTTTCTCAGCTCTTACGGAACAATTGTAGCTTGTGAT 1022
||||| || |||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 798 ACAGACGATGCCGAAATCGTCTATTTTCTCAGCTCTTACGGAACAGTTGTAGCTTGTGAT 857
Query 1023 CTCACTAAACGATGCTTCACCGAGCTACCAAAGCTTCTTCCTCCGTTCCTAGAGTACTCC 1082
||||| |||||||||||||||||||| || |||||||||||||||||||||||||| |||
Sbjct 858 CTCACGAAACGATGCTTCACCGAGCTGCCGAAGCTTCTTCCTCCGTTCCTAGAGTATTCC 917
Query 1083 ATCGACTTGGTGGAATGTGAA-GGAACAATGTATGTGATTCTTCTCTCTGAGTTCTTTGA 1141
|||||| ||||||||||| || |||||||||||||||||||| |||||||||||||||||
Sbjct 918 ATCGACCTGGTGGAATGT-AATGGAACAATGTATGTGATTCTCCTCTCTGAGTTCTTTGA 976
Query 1142 AAGCGCAAGTTTAAGGATCTGGAGACTTGACAATAACCGGGAATGGGTTCAAGTCGGGAT 1201
|||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 977 AAGCGCGAGTTTAAGGGTCTGGAGACTTGACAATAACCGGGAATGGGTTCAAGTCGGGAT 1036
Query 1202 GTTGCCTCCCGCGTTGTCTCATGAGTTATACGGTAAGAAAGGCGACATAAACTGCGTTGG 1261
||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct 1037 GTTGCCTCCCGCGTTGTCTCATGAGCTATACGGTAAAAAAGGCGACATAAACTGCGTTGG 1096
Query 1262 AGGAGCTGGAAACAAGATACTCGTGTGCTTCAATGCTAGTCCTCCAGAAGTGTATTGTAG 1321
|||||||||||||||| |||| |||||||||||||| ||||||||||| |||||||||||
Sbjct 1097 AGGAGCTGGAAACAAGGTACTTGTGTGCTTCAATGCGAGTCCTCCAGAGGTGTATTGTAG 1156
Query 1322 ATACTTTGTGTATGATTTAGTTGCAGAAGAGTGGAACGAGTTGCCGAAATGCTTCAAGGA 1381
||||||||||||||||||| |||||||||||||| |||||||||| ||||||||||||
Sbjct 1157 ATACTTTGTGTATGATTTAAATGCAGAAGAGTGGAGTGAGTTGCCGAGATGCTTCAAGGA 1216
Query 1382 TGGAGAAGCTGTGGATTTTGTTTCCGCTCTTTCTTTCCAGCCTAGGATCGAGGCTACAGT 1441
|||||||||| ||||||| |||||||||||||| ||||| |||||||||||||||||||
Sbjct 1217 TGGAGAAGCTATGGATTTCGTTTCCGCTCTTTCATTCCAACCTAGGATCGAGGCTACAGC 1276
Query 1442 TTGAAATTT 1450
|||||||||
Sbjct 1277 TTGAAATTT 1285
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58697067545
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5