BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G33180.1
Length=1243
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491367 jgi|Araly1|491367|fgenesh2_kg.7__800__AT4G33180.1 1681 0.0
> Ahg491367 jgi|Araly1|491367|fgenesh2_kg.7__800__AT4G33180.1
Length=1117
Score = 1681 bits (910), Expect = 0.0
Identities = 1047/1113 (94%), Gaps = 9/1113 (1%)
Strand=Plus/Plus
Query 40 TTTTGTCCATTTCTCACCCTTTCTCATACTCTCtttttttCTCGGACAAGAAGGCTA-CA 98
|||||||||||||||||||||||||||||||||| |||||||| |||| |||||||| |
Sbjct 1 TTTTGTCCATTTCTCACCCTTTCTCATACTCTCTCTTTTTCTCTGACACGAAGGCTATC- 59
Query 99 GAAAGATATGTCGCTGTCGTCTTACCTCAGCCCGACGCGCCTTCTAGAAGGCTACCTCCG 158
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 GAGAGATATGTCGCTGTCGTCTTACCTCAGCCCGACGCGCCTTCTAGAAGGCTACCTCCG 119
Query 159 CCGTTGTCTCAGGGCGGCAGGACTGACGTCGCAGACGCTTTCCATAGACTCTGAAACAAC 218
||||| |||| | |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 120 TCGTTGCCTCACGTCGGCAGGACTGACGTCGCAGACGCTTTCTATAGACTCTGAAACAAC 179
Query 219 CATCCACTTCTGGGGCCCACCACCTCTAGACCACCGGA--G-CGACGATGACAGACCGGT 275
||||||||||||||||||||||||||||||||||||| | |||||| |||||||||||
Sbjct 180 AATCCACTTCTGGGGCCCACCACCTCTAGACCACCGGAGCGACGACGACGACAGACCGGT 239
Query 276 TATGCTTCTCCTCCACGGCTTCGGTCCGTCGTCCATGTGGCAGTGGCGGCGACAGATGCA 335
|||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||
Sbjct 240 GATGCTTCTCCTCCACGGCTTCGGTCCATCCTCCATGTGGCAGTGGCGGCGACAGATTCA 299
Query 336 AGCCTTCTCTCCCTCCGCTTTCAGGGTTTATTCTCCCGATCTTGTCTTCTTCGGCGACTC 395
||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |||||
Sbjct 300 AGCCTTCTCTCCCTCCGTTTTCAGGCTTTATTCTCCCGATCTTGTCTTCTTCGGTGACTC 359
Query 396 TACCTCTTCCTCCACCAATCGCACCGAAGTCTTCCAGGCGGAATGTATGGCAAAGCTAAT 455
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 TACCTCTTCCTCCACCAATCGCACCGAAGTCTTCCAGGCGGAATGTATGGCAAAGCTAAT 419
Query 456 GGCGAAAATAGGAATAGGGAAGTATAATGTGGCTGGAACAAGCTACGGGGGGTTTGTTGC 515
|| |||||| |||||||||||||||||||||| |||||| ||||||||||| ||||| ||
Sbjct 420 GGAGAAAATGGGAATAGGGAAGTATAATGTGGTTGGAACTAGCTACGGGGGATTTGTGGC 479
Query 516 GTACCACATGGCCAAAATGTGGCCGGAAAAAGTGGAGAAAGTGGTGATTGCAAGCTCCGG 575
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 480 ATACCACATGGCCAAAATGTGGCCGGAAAAAGTGGAGAAAGTAGTGATTGCAAGCTCTGG 539
Query 576 CATCAACATGCGAAAGTGTGACGGTGAAAGTTTATTGCAAAGATCCAATTGTGAGTGCAT 635
||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct 540 TATCAACATGCGAAAGTGTGACAGTGAAAGTTTATTGCAAAGATCCAACTGTGAGTGCAT 599
Query 636 CGAGAAGGTTATGTTACCATCCACTGCAACTGAGTTTCGCACACTTATGGCTTTGGCATC 695
|||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 600 CGAGAAAGTTATGTTACCATCCACTGCAACTGAGCTTCGCACACTTATGGCTTTGGCATC 659
Query 696 TTCATGGCGGTTAGTTCGTATGTTTCCTGATGCTCTCTGGAACGACGTAATCAATAATTT 755
||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 660 TTCGTGGCGGTTAGTTCGTATGTTTCCTGATGCTCTCTGGAACGACGTTATTAATAATTT 719
Query 756 GTATAAAAAGAATAGAAAAGAGAAGATAGAATTGTTGAAGGGAGTGACTTTCGGCCGGAG 815
||||| |||||||||||||||||||| |||||||||||||| |||||||||||||| |
Sbjct 720 ATATAAGAAGAATAGAAAAGAGAAGATTGAATTGTTGAAGGGGGTGACTTTCGGCCGCAA 779
Query 816 CGAAAATTTAAACATCGATTCTCTTTCTCAGGAGGTCCTAATTGTATGGGGAGACAAAGA 875
||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 780 CGAGAATTTAAACATCGATCCTCTTTCTCAGGAGGTCCTAATTGTATGGGGAGACAAAGA 839
Query 876 TCAGATATTTCCTGTGAAGATGGCTTACGAATTAAAAGAGATTCTTGGAGACAAAACGAA 935
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||
Sbjct 840 TCAGATATTTCCTGTGAAGATGGCTTACGAATTAAAAGAGATTCTTGGAGAGAAAGCCAA 899
Query 936 ACTAGAAATCATTGACAACACTTCACATGTTCCTCAGATTGAATGTGCTCAAGAGTTCAA 995
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 900 ACTAGAAATCATTGACAACACTTCACACGTTCCTCAGATTGAATGTGCGCAAGAGTTCAA 959
Query 996 CAATATTGTTTTGAGATTTTTGAAGGGTTCTTAAGAGCCGTAATTTTATTCCAT-GCTAC 1054
|||||| ||||||| |||||||||||||||||||||| |||||||||| | || |||||
Sbjct 960 CAATATCGTTTTGAAATTTTTGAAGGGTTCTTAAGAGTGGTAATTTTATAC-ATTGCTAC 1018
Query 1055 ATGATTCTTCAGttttttttAAGTGTTAAACTATTGGTTACGTAATTTTGCGACTTTACT 1114
|||||||||||| || ||| | ||||||||||||||||||||||||||||| ||||||||
Sbjct 1019 ATGATTCTTCAGCTTGTTT-A-GTGTTAAACTATTGGTTACGTAATTTTGCTACTTTACT 1076
Query 1115 TGCCATGCTTTCTCATTTTTCATGTAAGAACTT 1147
||||||||||||||||||||||||||| |||||
Sbjct 1077 TGCCATGCTTTCTCATTTTTCATGTAATAACTT 1109
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46433712906
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5