BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G33220.1
Length=1875
Score E
Sequences producing significant alignments: (Bits) Value
Ahg888769 jgi|Araly1|888769|Al_scaffold_0007_755 2516 0.0
> Ahg888769 jgi|Araly1|888769|Al_scaffold_0007_755
Length=1578
Score = 2516 bits (1362), Expect = 0.0
Identities = 1509/1581 (95%), Gaps = 6/1581 (0%)
Strand=Plus/Plus
Query 68 ATGTCATGTTTGAAGTATTTCTTGATCTTATTGATGTTGGGACTGTGTGTCTCATCGGAG 127
||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||
Sbjct 1 ATGTCATGTTTGAAGTATTTCTTGATCTTCTTGATATTGGGTCTGTGTGTCTCATCGGAG 60
Query 128 GAGAATTTTCAATATGACTACTTGAAAGTTCCGGCAAGCGAGTTTGTGAGCTCCATAAAC 187
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GAGAATTTGCAATATGACTACTTGAAAGTTCCGGCAAGCGAGTTTGTGAGCTCCATAAAC 120
Query 188 ACAATTGTGGTAGTGATAAGACAAGTGAGTTCAATTTTGTCTCAGTTCGCTGATTTCAGC 247
|||||||||| ||| ||||||||||||||||| ||||||||||||||||| ||||| |||
Sbjct 121 ACAATTGTGGAAGTAATAAGACAAGTGAGTTCGATTTTGTCTCAGTTCGCGGATTTTAGC 180
Query 248 GGAGATCGCCGGCTGCAGAATGCGGTTTCCGATTGCCTTGATCTGCTTGACTTTTCTTCA 307
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GGAGGCCGCCGGCTGCAGAATGCGGTTTCCGATTGCCTTGATCTGCTTGACTTTTCTTCA 240
Query 308 GAGGAGCTCACTTGGTCTGCTTCTGCTTCTGAGAATCCAAAAGGTAAGGGCAACGGAACA 367
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GAGGAGCTGAGTTGGTCTGCTTCTGCTTCTGAGAATCCAAAAGGTAAGGGCAACGGAACA 300
Query 368 GGGGACGTTGGATCGGACACAAGGACATGGTTAAGTGCTGCTCTCTCCAACCAAGCCACT 427
|||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 301 GGGGACGTGGGATCGGACACAAGGACATGGTTAAGTGCTGCTCTCTCCAACCAAGACACT 360
Query 428 TGTATGGAAGGCTTCGATGGTACCTCTGGTCTCGTAAAATCCCTTGTCGCTGGCAGTCTC 487
||||||||||||||| | ||||||||||||||||| |||||||||||||||||||||||
Sbjct 361 TGTATGGAAGGCTTCCAGGGTACCTCTGGTCTCGTCAAATCCCTTGTCGCTGGCAGTCTT 420
Query 488 GATCAACTATATTCTATGCTTAGGGAATTGTTACCACTTGTGCAACCAGAGCAGAAACCC 547
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 421 GATCAACTATATTCTATGCTTAGGGAATTGTTACCACTTGTGCAACCCGAGCAGAAACCC 480
Query 548 AAGGCTGTTTCTAAACCTGGCCCTATTGCTAAAGGACCGAAGGCACCACCTGGCCGTAAA 607
||| | ||||||||||||||||||||||||||||||| ||||| ||||||| ||| |||
Sbjct 481 AAGCCAATTTCTAAACCTGGCCCTATTGCTAAAGGACCAAAGGCCCCACCTGCCCGCAAA 540
Query 608 CTCAGAGACACCGACGAAGACGAAAGCCTTCAATTCCCAGACTGGGTCAGACCGGACGAT 667
|| |||||||||||||| ||||||||||||||||||||||||||||| ||| |||| |||
Sbjct 541 CTTAGAGACACCGACGACGACGAAAGCCTTCAATTCCCAGACTGGGTTAGATCGGAAGAT 600
Query 668 CGTAAACTATTAGA-ATCAAACGGTAGGACTTACGACGTTAGTGTAGCATTGGATGGGAC 726
|| ||||||||||| | |||||||||||| |||||||||| | |||||||||||||||||
Sbjct 601 CGCAAACTATTAGAGA-CAAACGGTAGGAGTTACGACGTTTGCGTAGCATTGGATGGGAC 659
Query 727 AGGCAACTTCACAAAGATAATGGACGCCATAAAGAAAGCTCCTGATTATAGCTCGACACG 786
| |||||||||||||||||||||||||||| ||| ||||||||||||||||||| |||||
Sbjct 660 ATGCAACTTCACAAAGATAATGGACGCCATTAAGGAAGCTCCTGATTATAGCTCCACACG 719
Query 787 TTTCGTCATATACATTAAAAAA-GGTTTATATTTGGAGAATGTTGAGATCAAGAAGAAGA 845
|||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 720 TTTCGTTATATACA-TAAAAAAGGGTTTATATTTGGAGAATGTTGAGATCAAGAAGAAGA 778
Query 846 AATGGAACATTGTAATGTTAGGTGATGGCATTGACGTGACTGTTATTTCCGGTAACCGCA 905
||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct 779 AATGGAACATTGTAATGATAGGTGATGGCATTGATGTGACTGTTATTTCCGGTAACCGCA 838
Query 906 GCTTCATCGATGGTTGGACCACTTTCCGATCAGCTACATTCGCGGTAAGCGGAAGAGGAT 965
| ||||| || || |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 839 GTTTCATTGACGGGTGGACCACTTTCCGATCAGCTACATTTGCGGTAAGCGGAAGAGGAT 898
Query 966 TCTTAGCAAGAGATATAACGTTCCAGAACACAGCAGGGCCAGAGAAGCATCAGGCGGTAG 1025
|| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 899 TCCTAGCAAGAGATATAACGTTCCAGAACACAGCGGGGCCAGAGAAGCATCAGGCGGTAG 958
Query 1026 CACTGAGATCAGACTCTGACCTCTCTGTGTTCTTCAGATGTGCGATGAGGGGTTATCAAG 1085
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 959 CACTGAGATCAGACTCTGACCTCTCTGTGTTCTACAGATGTGCGATGAGGGGTTATCAAG 1018
Query 1086 ATACACTCTACACGCACACCATGCGTCAGTTCTACCGTGAGTGCACCATCACGGGAACAG 1145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 ATACACTCTACACGCACACCATGCGTCAGTTCTACCGTGAGTGCACCATCACGGGAACAG 1078
Query 1146 TAGATTTTATATTTGGGGATGGGACTGTTGTGTTTCAAAACTGTCAAATTTTGGCTAAAA 1205
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1079 TAGATTTTATATTTGGGGATGGGACTGTTGTGTTTCAAAATTGTCAAATTTTGGCTAAAA 1138
Query 1206 GAGGACTCCCTAACCAAAAGAACACCATCACTGCACAAGGCCGGAAAGATGTCAACCAAC 1265
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1139 GAGGACTCCCTAACCAAAAGAACACCATCACTGCACAAGGCCGGAAAGATGTGAACCAAC 1198
Query 1266 CCTCAGGATTCTCAATTCAATTCAGCAATATCTCGGCGGACGCAGATTTGGTCCCATACC 1325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 CCTCAGGATTCTCAATTCAATTCAGCAATATCTCGGCGGACGCAGATTTGGTCCCATACC 1258
Query 1326 TAAACACGACA-AGGACGTATCTAGGAAGGCCATGGAAGCTATATTCGAGAACGGTTTTC 1384
||||||||||| || |||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 1259 TAAACACGACACAG-ACGTATCTAGGAAGGCCATGGAAGCTATATTCAAGAACAGTTTTC 1317
Query 1385 ATTAGGAACAATATGAGCGACGTTGTGAGACCCGAAGGATGGCTTGAGTGGAACGCTGAT 1444
|||||||| || |||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 1318 ATTAGGAATAACATGAGCGACGTTGTGAGACCAGAAGGATGGCTCGAGTGGAACGCTGAC 1377
Query 1445 TTTGCGTTGGACACACTCTTCTACGGAGAGTTCATGAACTACGGGCCTGGTTCAGGACTC 1504
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1378 TTTGCGTTGGACACACTCTTCTACGGAGAGTTCATGAACTACGGGCCTGGTTCAGGACTA 1437
Query 1505 AGCAGCCGAGTCAAATGGCCTGGTTACCACGTCTTTAACAACTCGGATCAGGCTAACAAC 1564
||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1438 AGCGGCCGAGTCAAATGGCCTGGTTACCACGTCTTTAACAACTCGGAGCAGGCTAACAAC 1497
Query 1565 TTCACCGTTTCTCAGTTCATTAAAGGAAATCTTTGGCTGCCTTCTACGGGAGTAACGTTT 1624
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1498 TTCACCGTTTCTCAGTTCATTAAAGGAAATCTTTGGCTGCCTTCTACGGGGGTAACGTTT 1557
Query 1625 AGTGATGGCTTGTATATCTAA 1645
||||| |||||| ||||||||
Sbjct 1558 AGTGACGGCTTGAATATCTAA 1578
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70428863005
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5