BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G33230.1
Length=1830
Score E
Sequences producing significant alignments: (Bits) Value
Ahg353497 jgi|Araly1|353497|fgenesh1_pg.C_scaffold_7000670 2872 0.0
Ahg320434 jgi|Araly1|320434|fgenesh1_pm.C_scaffold_4000491 885 0.0
> Ahg353497 jgi|Araly1|353497|fgenesh1_pg.C_scaffold_7000670
Length=1830
Score = 2872 bits (1555), Expect = 0.0
Identities = 1739/1830 (95%), Gaps = 4/1830 (0%)
Strand=Plus/Plus
Query 1 ATGGCTTTTCAAGACTTCGACAAGATTCAAGAACGCGTAAATGCAGAGAGAAAACGTAAA 60
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 1 ATGGCTTTTCAAGACTTTGACAAGATTCAAGAACGCGTAAATGCAGAGAGGAAACGTAAA 60
Query 61 TTCAGGAAGAGAATCATCTTAGGAGTCGTCTCCGTGCTTGTTGTTGCTGCTGCCATTATT 120
|||||||||||||||||||| ||| ||||||| | ||||||||||| |||||||||||||
Sbjct 61 TTCAGGAAGAGAATCATCTTTGGAATCGTCTCTGCGCTTGTTGTTGTTGCTGCCATTATT 120
Query 121 GGAGGTGCTTTTGCTTATGTTACATATGaaaacaaaactcaagaacaagggaaaactaca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GGAGGTGCTTTTGCTTATGTTACATATGAAAACAAAACTCAAGAACAAGGGAAAACTACA 180
Query 181 aacaacaaaaGTAAGGATAGCCCCACCAAAAGCGAGAGCCCGAGCCCGAAACCGCCATCA 240
|||||||||||||| ||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct 181 AACAACAAAAGTAAAGATAGCCCCACCAAAAGCGAGAGCCCGAGCCGGAAACCACCATCA 240
Query 241 TCCGCAGCACAAACTGTGAAAGCTGGCCAGGTCGATAAGATTATCCAAACACTTTGCAAT 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TCCGCAGCACAAACTGTGAAAGCTGGCCAGGTCGATAAGATTATCCAAACACTTTGCAAT 300
Query 301 TCTACTCTCTACAAACCAACTTGCCAGAATACTCTTAAAAATGAGACAAAGAAAGATACT 360
|| ||||| ||||||||||||||| |||||||||||||||||| |||||||| |||||||
Sbjct 301 TCCACTCTTTACAAACCAACTTGCGAGAATACTCTTAAAAATGGGACAAAGACAGATACT 360
Query 361 CCTCAAACTGATCCTAGGAGCCTGTTAAAATCTGCCATTGTAGCTGTCAATGACGATCTA 420
|||| | |||| |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 361 CCTCTATCTGACCCTAGGAGCCTGTTAACGTCTGCCATTGTAGCTGTCAATGACGATCTA 420
Query 421 GACCA-AGTATTCAAAAGGGTTTTGAGCCTGAAAACAGAGAACAAAGATGACAAAGACGC 479
|| || |||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GA-CAGAGTATTTAAAAAGGTTTTGAGCCTGAAAACAGAGAACAAAGATGACAAAGACGC 479
Query 480 TATAGCCCAGTGTAAGTTGCTTGTGGATGAAGCTAAAGAAGAACTTGGCACCTCCATGAA 539
|||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 480 TATAGCTCAGTGTAAGTTGCTTGTAGATGAAGCTAAGGAAGAACTTGGCACCTCCATGAA 539
Query 540 AAGAATCAACGACTCAGAGGTTAATAACTTTGCAAAAATAGTTCCCGATTTGGACAGTTG 599
||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 540 AAGAATCAACGACACAGAGGTTAATAACTTTGCGAAAATAGTTCCCGATTTAGACAGTTG 599
Query 600 GCTAAGCGCAGTCATGTCTTATCAAGAAACATGTGTCGATGGATTTGAAGAAGGGAAACT 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 GCTAAGCGCAGTCATGTCTTATCAAGAAACATGTGTCGATGGATTTGAAGAAGGGAAACT 659
Query 660 CAAAACGGAGATACGTAAGAATTTCAATTCTTCTCAAGTTTTGACAAGCAATTCACTCGC 719
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 660 CAAAACGGAGATACGTAAGAATTTCAATTCTTCTCAAGTTTTGACAAGTAATTCACTCGC 719
Query 720 GATGATAAAATCTTTAGACGGATATCTTTCCTCGGTTCCAAAGGTTAAAACGCGACTTCT 779
||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |||
Sbjct 720 GATGATAAAATCTTTAGACGGATATATATCCTCGGTTCCAAAGGTTAAAACGCGACATCT 779
Query 780 TCTTGAAGCAAGATCTTCTGCTAAAGAGACAGATCATATTACGTCGTGGCTAAGCAATAA 839
||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| ||
Sbjct 780 TCTTGAAGCAAGATCTTCTGCTAAAGAGACAGATCATATTACGTCTTGGTTAAGCAACAA 839
Query 840 GGAAAGACGAATGTTAAAAGCTGTTGATGTGAAAGCATTGAAACCTAATGCTACAGTGGC 899
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 840 GGAGAGACGAATGTTAAAAGCTGTTGATGTGAATGCATTGAAACCTAATGCTACAGTGGC 899
Query 900 TAAAGATGGCAGTGGAAATTTTACTACCATCAACGCTGCACTTAAAGCAATGCCTGCCAA 959
||||||||| ||||||||||| || ||||| |||| ||||||||||||||||||||| ||
Sbjct 900 TAAAGATGGTAGTGGAAATTTCACAACCATTAACGATGCACTTAAAGCAATGCCTGCTAA 959
Query 960 GTACCAAGGAAGGTACACCATCTATATCAAACATGGAATTTATGATGAATCTGTGATTAT 1019
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 960 GTACCAAGGAAGGTACACCATCTATATCAAACATGGAGTTTATGATGAATCTGTGATTAT 1019
Query 1020 TGATAAGAAGAAACCTAATGTTACAATGGTCGGTGATGGATCACAGAAGACGATCGTGAC 1079
||| |||||||||||||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct 1020 TGACAAGAAGAAACCTAATGTTACAATGATCGGTGATGGATCACAGAAGACAATCGTGAC 1079
Query 1080 GGGAAACAAAAGCCACGCAAAGAAAATTCGAACGTTCCTAACAGCAACATTTGTGGCACA 1139
||| ||||||||||||||||||||||| || || ||| | ||||||||||||||||||||
Sbjct 1080 GGGCAACAAAAGCCACGCAAAGAAAATCCGCACTTTCGTCACAGCAACATTTGTGGCACA 1139
Query 1140 AGGAGAAGGATTCATGGCACAATCCATGGGGTTTC-GGAACACTGCTGGGCCAGAGGGAC 1198
||||||||||||||||||||| ||||||||||| | ||||||| ||||||||||||||||
Sbjct 1140 AGGAGAAGGATTCATGGCACACTCCATGGGGTT-CAGGAACACGGCTGGGCCAGAGGGAC 1198
Query 1199 ACCAAGCGGTCGCAATACGTGTCCAATCCGACCGATCTGTTTTCCTTAACTGTCGATTTG 1258
||||||| |||||||| ||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 1199 ACCAAGCTGTCGCAATCCGTGTCCAATCCGACCGTTCTGTTTTCCTAAACTGTCGATTTG 1258
Query 1259 AAGGCTACCAAGACACGTTATACGCATACACTCACCGCCAATATTACAGAAGTTGTGTCA 1318
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 1259 AAGGCTACCAAGACACGTTATATGCGTACACTCACCGCCAATATTACAGAAGTTGTGTCA 1318
Query 1319 TTATCGGGACAGTTGATTTCATCTTCGGTGATGCGGCCGCGATTTTCCAGAACTGTGACA 1378
|| | || ||||| |||||||||||||||||||| ||||| || ||||||||||||||||
Sbjct 1319 TTGTAGGAACAGTCGATTTCATCTTCGGTGATGCCGCCGCCATATTCCAGAACTGTGACA 1378
Query 1379 TCTTTATCAGAAAAGGTTTACCGGGGCAGAAGAACACGGTGACGGCTCAAGGACGAGTGG 1438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1379 TCTTTATCAGAAAAGGTTTACCGGGGCAGAAGAACACGGTGACGGCTCAAGGACGAGTGG 1438
Query 1439 ATAAGTTTCAGACGACAGGCTTTGTGATCCACAACTGTACAGTTGCTCCAAACGAAGATC 1498
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1439 ATAAGTTTCAGACGACAGGCTTTGTGATCCACAACTGTACAATTGCTCCAAACGAAGATC 1498
Query 1499 TTAAACCCGTAAAGGCCCAGTTCAAGAGCTATCTCGGCCGGCCATGGAAACCCCATTCTC 1558
|||||||||||||||| ||||||||||||| ||||||||||| |||||| | |||||||
Sbjct 1499 TTAAACCCGTAAAGGCAGAGTTCAAGAGCTACCTCGGCCGGCCGTGGAAAACACATTCTC 1558
Query 1559 GAACAGTCGTGATGGAATCAACGATCGAGGATGTGATCGATCCTGTTGGTTGGTTGAGAT 1618
|||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1559 GAACCGTCGTGATGGAATCAACGATCGAGGATGTGATCGATCATGTTGGTTGGTTGAGAT 1618
Query 1619 GGCAAGAGACGGATTTTGCTATCGATACATTGTCTTACGCGGAATACAAGAATGATGGTC 1678
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 1619 GGCAAGAGACGGATTTTGCTATCGACACATTGTCTTATGCGGAATACAAGAATGATGGTC 1678
Query 1679 CAAGCGGAGCAACCGCTGCTAGGGTTAAATGGCCTGGATTTAGGGTTTTAAACAAGGAAG 1738
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1679 CAAGCGGAGCAACCGTTTCTAGGGTTAAATGGCCTGGATTTAGGGTTTTAAACAAGGAAG 1738
Query 1739 AGGCGATGAAATTTACGGTGGGGCCATTCTTACAAGGGGAATGGATCCAAGCGATAGGGT 1798
|||||||||||| ||||||||||||||||||||||||||||||||||| | ||| ||||
Sbjct 1739 AGGCGATGAAATATACGGTGGGGCCATTCTTACAAGGGGAATGGATCCGTGAGATGGGGT 1798
Query 1799 CTCCGGTTAAGCTTGGCCTTTACGATGCTT 1828
|||||||||||||||||||||| |||||||
Sbjct 1799 CTCCGGTTAAGCTTGGCCTTTATGATGCTT 1828
> Ahg320434 jgi|Araly1|320434|fgenesh1_pm.C_scaffold_4000491
Length=1860
Score = 885 bits (479), Expect = 0.0
Identities = 1238/1597 (78%), Gaps = 81/1597 (5%)
Strand=Plus/Plus
Query 259 AAAGCTGGCCA-GGTCGATAAGATTATCCAAACACTTTGCAATTCTACTCTCTACAAACC 317
||| |||| || ||| || ||||||||||||||| | ||| ||| || || ||||| |
Sbjct 316 AAACCTGGTCAGGGT-GACAAGATTATCCAAACAATCTGCGGTTCAACGCTTTACAAGCG 374
Query 318 AACTTGCCA-GAATACTCTTAAAAATGAG-ACAAAGAAAGATACTCCTCAAACTGATCCT 375
| | ||| | ||| || || ||||| || ||| |||| | | | || | ||||
Sbjct 375 AGCCTGCGAGGAA-ACGCTCAAAAA-CAGAACAGAGAAGGGTTTTGCTTTGGCCAATCCG 432
Query 376 AGGAGCCTGTTAAAATCTGCCATTGTAGCTGTCAATGACGATCTAGACCAAGTATTCA-A 434
| |||| | || || |||||||||| |||||||||||| ||||| |||| ||| || | |
Sbjct 433 ACGAGCTTTTTGAAGTCTGCCATTGAAGCTGTCAATGAAGATCTTGACCGAGT-TTTAGA 491
Query 435 -AAGGGTTTTGAGCCTGAAAACAGAGAACAAAGATGACAAAGACGCTATAGCCCAGTGTA 493
|| ||| ||||| || || || || ||| | ||||| | ||| || || || || ||||
Sbjct 492 GAA-GGTCTTGAGTCTCAAGACTGAAAACCAGGATGATAGAGATGCGATTGCACAATGTA 550
Query 494 AGTTGCTTGTGGATGAAGCTAAA-GAAG-AACTTGGCACCTC-CATGAA-AAGAATCAAC 549
||||||||||||| || || ||| || | ||| | | | || | |||| || |||||||
Sbjct 551 AGTTGCTTGTGGAAGACGC-AAAGGAGGAAAC-CGCCGCATCGC-TGAACAA-AATCAAC 606
Query 550 GACT-CAGAGGTTAATAACTTTGCAAAAATAGTTCCCGATTTGGACAGTTGGCTAAGCGC 608
| | |||| || |||| ||| ||||| ||||||| || |||| ||||||||||||||
Sbjct 607 G-GTACAGAAGTCAATAGCTTCGCAAAGGTAGTTCCTGACCTGGAAAGTTGGCTAAGCGC 665
Query 609 AGTCATGTCTTATCAAGAAACATGTGTCGATGGATTTGAAGAAGGGAAACTCAAAA-C-G 666
||||||||||| || || ||||| | || || |||||||||||| | || |||| | |
Sbjct 666 GGTCATGTCTTACCAGGAGACATGCCTTGACGGGTTTGAAGAAGGG-ACCTTAAAATCTG 724
Query 667 GAGAT-ACGTAAGAATTTCAATTCTTCTCAAGTTTTGACAAGCAATTCACTCGCGATGAT 725
|| | | | |||| |||||||||| || ||| |||| |||||||| || ||||||||
Sbjct 725 AAG-TGAAG-AAGAGCGTCAATTCTTCACAGGTTCTGACGAGCAATTCCCTTGCGATGAT 782
Query 726 AAAAT-CTTTAGACG-GATATCTTTCCTCGGTTCCAAAGGTTA-AAACGCGACTTCTTCT 782
| || |||| |||| || ||| | ||| ||| | |||| || | | || |
Sbjct 783 CACATCCTTT-GACGTGA-ATC--T-CTC---TCC--A-GTTATGAA-G-G---TC-GC- 824
Query 783 TGAAGCAAGATCTTCTGCTAAAGAGACAGATCATATTACGTCGTGGCTAAGCAATAAGGA 842
|| || || | ||| || ||| ||||| |||| ||| ||||||| ||||
Sbjct 825 --AA-CACGA-CATCTTCT--------TGATGATATTCCGTCTTGGGTAAGCAACGAGGA 872
Query 843 AAGACGAATGTTAAAAGCTGTTGATGTGAAAGCATTGAAACCTAATGCTACAGTGGCTAA 902
|| ||||||||| |||||||||||||| || ||||| |||||||| || || |||||
Sbjct 873 TCGAAGAATGTTAAGGGCTGTTGATGTGAAGGCTTTGAAGCCTAATGCCACTGTAGCTAA 932
Query 903 AGATGGCAGTGGAAATTTTACTACCATCAACGCTGCACTTAAAGCAATGCCTGCCAAGTA 962
|||||||||||||||||| || ||||| || | ||| || | ||||||||||| || ||
Sbjct 933 AGATGGCAGTGGAAATTTCACGACCATTAATGATGCTCTGAGAGCAATGCCTGAGAAATA 992
Query 963 CCAAGGAAGGTACACCATCTATATCAAACATGGAATTTATGATGAATCTGTGATTATTGA 1022
| |||||||||| ||||| ||||||| || |||||||| |||||||||| | | ||
Sbjct 993 TGAGGGAAGGTACATTATCTACGTCAAACAAGGCATTTATGACGAATCTGTGACTGTCGA 1052
Query 1023 TAAGAAGAAACCTAATGTTACAATGGTCGGTGATGGATCACAGAAGACGATCGTGACGGG 1082
||||||||| | ||| | || |||||||| ||||||||||| ||||| || ||||| ||
Sbjct 1053 TAAGAAGAAGGCGAATCTCACTATGGTCGGAGATGGATCACAAAAGACAATTGTGACCGG 1112
Query 1083 AAACAAAAGCCACGCAAAGAAAATTCGAACGTTCCTAACAGCAACATTTGTGGCACAAGG 1142
|||||||||||||||||||||||| || || || || || ||||| || || ||||| ||
Sbjct 1113 AAACAAAAGCCACGCAAAGAAAATCCGCACTTTTCTCACGGCAACGTTCGTTGCACAGGG 1172
Query 1143 AGAAGGATTCATGGCACAATCCATGGGGTTTCGGAACACTGCTGGGCCAGAGGGACACCA 1202
|||||| || |||||||| || |||||||| |||||||| ||||||||||| ||||| ||
Sbjct 1173 AGAAGGGTTTATGGCACAGTCAATGGGGTTCCGGAACACGGCTGGGCCAGAAGGACATCA 1232
Query 1203 AGCGGTCGCAATACGTGTCCAATCCGACCGATCTGTTTTCCTTAACTGTCGATTTGAAGG 1262
||| || |||||||||||||||||||| |||| ||||||| ||||| |||||||||||
Sbjct 1233 AGCAGTTGCAATACGTGTCCAATCCGATAGATCAATTTTCCTAAACTGCCGATTTGAAGG 1292
Query 1263 CTACCAAGACACGTTATACGCATACACTCACCGCCAATATTACAGAAGTTGTGTCATTA- 1321
||||||||||| || ||||| ||||| ||||| || || |||||||| ||||| | ||
Sbjct 1293 ATACCAAGACACATTGTACGCTTACACACACCGTCAGTACTACAGAAGCTGTGTGA-TAG 1351
Query 1322 TCGGGACAGTTGATTTCATCTTCGGTGATGCGGCCGCGATTTTCCAGAACTGTGACATCT 1381
|||| ||| | || ||||| ||||| |||||||| || || |||||||||||| ||||||
Sbjct 1352 TCGGTACAATCGACTTCATATTCGGAGATGCGGCTGCCATCTTCCAGAACTGTAACATCT 1411
Query 1382 TTATCAGAAAAGGTTTACCGGGGCAGAAGAACACGGTGACGGCTCAAGGACGAGTGGATA 1441
| ||| ||||||| ||||| || || |||||||| ||||| ||||||||||| || || |
Sbjct 1412 TCATCCGAAAAGGCTTACCAGGACAAAAGAACACCGTGACCGCTCAAGGACGTGTTGACA 1471
Query 1442 AGTTTCAGACGACAGGCTTT-GTGATCCACAACTGTACAGTTGCTCCAAACGAAGATCTT 1500
||||||||||||| || ||| ||| |||| || |||| | | ||| |||| ||||| |||
Sbjct 1472 AGTTTCAGACGACTGG-TTTCGTGGTCCATAATTGTAAAATCGCTGCAAATGAAGACCTT 1530
Query 1501 AAACCCGTAAAGGCCCAGTTCAAGAGCTATCTCGGCCGGCCATGGAA-ACCCCATTCTCG 1559
|| || ||||||| ||| ||||||||| ||||| | || ||||| | | | |||||
Sbjct 1531 AAGCCAGTAAAGGAAGAGTACAAGAGCTACCTCGGGAGACCGTGGAAGA-ACTACTCTCG 1589
Query 1560 AACAG-TCGTGATGGAATC-AACGATCGAGGATGTGATCGATCCTGTTGGTTGGTTGAGA 1617
||| | || | |||||||| || |||||| ||||||| || |||||||| |||||||||
Sbjct 1590 AAC-GATCATAATGGAATCTAA-AATCGAGAATGTGATTGACCCTGTTGGATGGTTGAGA 1647
Query 1618 TGGCAAGAGACGGATTTTGCTATCGATACATTGT-CTTACGCGGAATACAAGAATGATGG 1676
|||||||||||||||||||| || || ||| | | || ||||||| ||||| || | ||
Sbjct 1648 TGGCAAGAGACGGATTTTGCGATAGACACACTCTACT-ACGCGGAGTACAATAACAAAGG 1706
Query 1677 -TCCAAGCGGAGCA-ACCGCTGCTAGGGTTAAATGGCCTGGATTTAGGGTTTTAAACAAG 1734
|| ||| |||| | || || | || ||||||||||||||||||| ||| ||||||||
Sbjct 1707 ATC-AAGTGGAG-ATACAACTTCAAGAGTTAAATGGCCTGGATTTAAGGTCATAAACAAG 1764
Query 1735 GAAGAGGCGATGAAATTTACGGTGGGGCCATTCTTACAAGGGGAATGGATCCAA-GCGAT 1793
|| ||||| |||| ||||| || ||||| ||||||||||| || |||||| | || |
Sbjct 1765 GAGGAGGCTTTGAACTTTACAGTTGGGCCCTTCTTACAAGGAGATTGGATC-AGTGCC-T 1822
Query 1794 -AGGGTCTCCGGTTAAGCTTGGC-CTTTACGATGCTT 1828
||| ||||| |||||| |||| ||||| |||||||
Sbjct 1823 CAGGTTCTCCCGTTAAG-TTGGGTCTTTATGATGCTT 1858
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68714801980
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5