BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G33250.1
Length=974
Score E
Sequences producing significant alignments: (Bits) Value
Ahg944608 jgi|Araly1|944608|scaffold_700837.1 1103 0.0
> Ahg944608 jgi|Araly1|944608|scaffold_700837.1
Length=729
Score = 1103 bits (597), Expect = 0.0
Identities = 688/731 (94%), Gaps = 10/731 (1%)
Strand=Plus/Plus
Query 74 GAGAAGGAGAAAG-AGGCAGAGATGGGAGTAGAGATCCAATCGCCGCAGGAACAGAGCTC 132
||||| ||||||| ||| ||||||||||||||||||||| || |||||||||||||||||
Sbjct 1 GAGAAAGAGAAAGAAGG-AGAGATGGGAGTAGAGATCCAGTCCCCGCAGGAACAGAGCTC 59
Query 133 TTACACCGTTGAGCAGCTCGTCGCCCTTAATCCTTTCAACCCTGAAATCCTGCCTGATCT 192
|||||| |||||||||||||||||| | ||||| ||||||||||||||||| ||||||||
Sbjct 60 TTACACTGTTGAGCAGCTCGTCGCCGTCAATCCCTTCAACCCTGAAATCCTTCCTGATCT 119
Query 193 CGAAAACTACGTT-A--A-C--GTTACATCGCAAACGTATAGTCTGGAAGTAAACCTATG 246
||||||||||||| | | | |||||||| ||||||||||||||||||| |||||||||
Sbjct 120 CGAAAACTACGTTAATGAGCAGGTTACATCTCAAACGTATAGTCTGGAAGCAAACCTATG 179
Query 247 CTTGCTTCGGCTCTATCAGTTTGAGCCTGAGCGCATGAACACTCATATCGTGGCTCGAAT 306
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 180 CTTGCTTCGGCTCTATCAGTTTGAGCCTGAGCGCATGAATACTCATATCGTGGCTCGAAT 239
Query 307 CTTGGTCAAGGCTCTTATGGCTATGCCAACTCCAGACTTCAGCCTTTGCCTCTTCTTGAT 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 CTTGGTCAAGGCTCTTATGGCTATGCCAACTCCAGACTTCAGCCTTTGCCTCTTCTTGAT 299
Query 367 TCCCGAAAGAGTGCAAATGGAGGAGCAGTTCAAGTCACTAATTGTTCTATCACACTACCT 426
|||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct 300 TCCCGAAAGAGTGCAAATGGAGGAGCAGTTCAAGGCACTAATCGTTCTATCACACTACCT 359
Query 427 TGAGACTGGGAGGTTCCAACAGTTCTGGGATGAAGCTGCCAAGAACCGTCACATTCTCGA 486
|||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct 360 TGAGACTGGGAGGTTCCAACAGTTCTGGGATGAAGCGGCCAAGAACCGTAACATTCTCGA 419
Query 487 GGCTGTTCCAGGTTTTGAGCAAGCTATTCAAGCATATGCAAGTCACCTTCTTAGCTTAAG 546
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 420 GGCTGTTCCAGGTTTTGAGCAAGCTATCCAAGCATATGCAAGTCACCTTCTTAGCTTAAG 479
Query 547 CTACCAAAAGGTTCCAAGATCAGTGCTGGCTGAGGCTGTTAACATGGATGGTGCATCTCT 606
||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 480 CTACCAAAAAGTTCCAAGATCTGTGCTTGCTGAGGCTGTTAACATGGATGGTGCATCTCT 539
Query 607 AGACAAATTCATCGAGCAGCAAGTGACTAACAGTGGATGGATTGTTGAGAAAGAGGGTGG 666
|||||| || || ||||| ||| |||||| ||||||||||||||||||||||||||||||
Sbjct 540 AGACAAGTTTATTGAGCACCAAATGACTAGCAGTGGATGGATTGTTGAGAAAGAGGGTGG 599
Query 667 AAGTATTGTCTTACCACAAAATGAATTTAACCATCCGGAGCTCAAGAAAAATACAGGTGA 726
|||||||||||| || ||||||||||||||||||||||| || |||||||||||||||||
Sbjct 600 AAGTATTGTCTTGCCGCAAAATGAATTTAACCATCCGGAACTTAAGAAAAATACAGGTGA 659
Query 727 GAATGTTCCCTTGGAACACATTGCCCGCATCTTCCCCATCCTTGGTTGAACCAA-TTCAT 785
||||||||||||||||||||| || ||||||||||||||||||||||||| ||| || ||
Sbjct 660 GAATGTTCCCTTGGAACACATCGCTCGCATCTTCCCCATCCTTGGTTGAATCAAGTT-AT 718
Query 786 GAGAACACTGC 796
||| |||||||
Sbjct 719 GAGGACACTGC 729
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36178648233
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5