BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G33260.1
Length=1741
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491360 jgi|Araly1|491360|fgenesh2_kg.7__793__AT4G33270.1 2132 0.0
Ahg489619 jgi|Araly1|489619|fgenesh2_kg.6__2753__AT5G27570.1 1129 0.0
Ahg347582 jgi|Araly1|347582|fgenesh1_pg.C_scaffold_5000974 1066 0.0
Ahg344325 jgi|Araly1|344325|fgenesh1_pg.C_scaffold_4000667 1044 0.0
Ahg353278 jgi|Araly1|353278|fgenesh1_pg.C_scaffold_7000451 398 9e-110
Ahg489532 jgi|Araly1|489532|fgenesh2_kg.6__2666__AT5G27945.1 392 4e-108
> Ahg491360 jgi|Araly1|491360|fgenesh2_kg.7__793__AT4G33270.1
Length=1494
Score = 2132 bits (1154), Expect = 0.0
Identities = 1280/1342 (95%), Gaps = 3/1342 (0%)
Strand=Plus/Plus
Query 249 TCGGTGCCCACTTCAAGAACACTTTCTTCCCAGAAAAAATTCCAAGGAAAATCTGGACAG 308
||||||||| ||||||||||||||||||||||| |||| |||||||||||| ||||||||
Sbjct 155 TCGGTGCCCTCTTCAAGAACACTTTCTTCCCAGGAAAACTTCCAAGGAAAACCTGGACAG 214
Query 309 GTTCATACCGAATAGATCAGCGATGAATTTTGACTATGCTCACTTTGCCCTCACTGAAGA 368
||||||||| || || ||||| ||| |||| ||||||||||||||||||||||||||||
Sbjct 215 GTTCATACCAAACAGGTCAGCCATGGATTTCGACTATGCTCACTTTGCCCTCACTGAAGG 274
Query 369 AAGAAAAGGTAAGGATCA-ATCTGCAACGGTAAGTTCACCATCCAAAGAGGCCTACAGGA 427
|||||||||||| ||||| | ||||| |||||||||||||||||||||||||||||||||
Sbjct 275 AAGAAAAGGTAACGATCAGA-CTGCAGCGGTAAGTTCACCATCCAAAGAGGCCTACAGGA 333
Query 428 AGCAATTGGCTGAGACCATGAACTTGAACCACACAAGGATTCTCGCCTTCAGAAACAAAC 487
|||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||
Sbjct 334 AGCAATTGGCTGAGACCATGAATTTGAATCACACCCGGATTCTCGCCTTCAGAAACAAAC 393
Query 488 CTCAGGCTCCTGTCGAACTGCTTCCGAGCAATCACTCTGCTTCTCTTCACCAACAACCCA 547
|||| |||||||| ||||||||||| ||||||||||||||||||||||||||||| || |
Sbjct 394 CTCAAGCTCCTGTAGAACTGCTTCCCAGCAATCACTCTGCTTCTCTTCACCAACAGCCTA 453
Query 548 AATCTGTAAAGCCTCGTCGATACATTCCTCAGACTTCTGAGAGAACCTTGGATGCACCTG 607
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 454 AATCTGTAAAGCCTCGTAGATACATTCCTCAGACTTCTGAGAGAACCTTGGATGCACCTG 513
Query 608 ACATTGTTGACGATTTCTACCTCAACTTGCTGGACTGGGGAAGTGCAAATGTCTTAGCCA 667
||||||| || ||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 514 ACATTGTGGATGATTTCTACCTCAACTTGCTGGACTGGGGCAGTGCTAATGTCTTAGCCA 573
Query 668 TAGCGTTGGACCACACTGTCTACTTGTGGGATGCTTCCACTGGTTCTACATCTGAGCTTG 727
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 574 TAGCCTTGGACCACACTGTCTACTTGTGGGATGCTTCCACTGGTTCTACATCTGAGCTTG 633
Query 728 TGACCATTGATGAGGAGAAGGGACCTGTCACAAGTATCAACTGGGCTCCTGATGGTCGTC 787
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 634 TGACCATTGATGAGGAGAAGGGACCTGTCACAAGTATCAACTGGGCTCCTGATGGTCGTC 693
Query 788 ATGTTGCAGTTGGACTCAACAACTCTGAAGTCCAGCTGTGGGATTCTGCATCCAACCGTC 847
||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 694 ATGTTGCAGTTGGGCTCAACAACTCTGAAGTCCAGCTTTGGGATTCTGCTTCCAACCGTC 753
Query 848 AACTGAGAACATTAAAGGGTGGTCACCAGTCAAGAGTAGGATCACTGGCATGGAACAATC 907
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 754 AACTGAGAACATTGAAGGGTGGTCACCAGTCAAGAGTAGGATCACTGGCATGGAACAATC 813
Query 908 ATATCCTTACTACTGGAGGAATGGATGGACTGATCATCAACAATGATGTGAGGATCAGAT 967
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 814 ACATCCTTACTACTGGAGGAATGGATGGACTGATCATTAACAATGATGTGAGGATCAGAT 873
Query 968 CACCCATTGTGGAAACTTACAGAGGTCACACTCAAGAAGTTTGTGGGCTCAAGTGGTCAG 1027
|||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 874 CACCCATTGTTGAAACTTACAGAGGTCACACTCAAGAGGTTTGTGGGCTAAAGTGGTCAG 933
Query 1028 GATCTGGACAACAACTAGCAAGTGGTGGCAACGACAATGTGGTACACATCTGGGATCGTT 1087
|||||||||| |||||||||||||| |||||||||||||| |||||||| ||||||||||
Sbjct 934 GATCTGGACAGCAACTAGCAAGTGGAGGCAACGACAATGTCGTACACATATGGGATCGTT 993
Query 1088 CTGTCGCTTCCTCAAACTCAACCACACAATGGCTGCACAGGCTTGAGGAACATACATCTG 1147
|||| |||||||||||||||| ||| |||||||||||||| |||||||||||||||||||
Sbjct 994 CTGTTGCTTCCTCAAACTCAAACACGCAATGGCTGCACAGACTTGAGGAACATACATCTG 1053
Query 1148 CTGTGAAGGCTCTTGCGTGGTGCCCTTTCCAAGCGAATTTGCTTGCAACTGGTGGTGGTG 1207
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1054 CTGTGAAAGCTCTTGCGTGGTGCCCTTTCCAAGCGAATTTGCTTGCAACTGGTGGTGGTG 1113
Query 1208 GAGGAGACAGGACGATAAAGTTCTGGAATACTCACACTGGGGCTTGCTTGAATTCAGTAG 1267
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1114 GAGGAGACAGGACGATAAAATTCTGGAATACTCACACTGGGGCTTGCTTGAATTCAGTAG 1173
Query 1268 ACACTGGTTCCCAAGTTTGTTCGTTGTTATGGAGCAAGAATGAAAGAGAGTTGCTTAGCT 1327
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1174 ACACTGGCTCCCAAGTTTGTTCGTTGTTATGGAGCAAGAATGAAAGAGAGTTGCTTAGTT 1233
Query 1328 CACATGGGTTTACACAGAATCAGCTTACACTTTGGAAGTACCCATCCATGGTGAAAATGG 1387
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1234 CACATGGGTTTACACAGAATCAGCTCACACTTTGGAAGTACCCATCCATGGTGAAAATGG 1293
Query 1388 CTGAGCTCACTGGTCATACATCAAGAGTTCTATATATGGCCCAGAGTCCAGATGGTTGTA 1447
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1294 CTGAGCTCACTGGTCATACATCAAGAGTTCTATATATGGCCCAGAGTCCTGATGGTTGTA 1353
Query 1448 CTGTAGCTTCAGCAGCAGGAGACGAGACCCTGAGGTTTTGGAACGTTTTTGGAGTACCAG 1507
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1354 CCGTAGCTTCAGCAGCAGGAGACGAGACTCTGAGGTTTTGGAACGTTTTTGGAGTACCAG 1413
Query 1508 AGACTGCaaaaaaaGCTGCACCAAAAGCAGTTGCCGAGCCATTTTCTCATGTGAATCGTA 1567
|||| || ||||||||||| |||||||||||| |||||||||||||||| ||||||||||
Sbjct 1414 AGACCGCCAAAAAAGCTGCTCCAAAAGCAGTTTCCGAGCCATTTTCTCACGTGAATCGTA 1473
Query 1568 TTCGATGAAGCTGTTGAAGACT 1589
|||| ||||||||| |||||||
Sbjct 1474 TTCGTTGAAGCTGT-GAAGACT 1494
> Ahg489619 jgi|Araly1|489619|fgenesh2_kg.6__2753__AT5G27570.1
Length=1233
Score = 1129 bits (611), Expect = 0.0
Identities = 1008/1197 (84%), Gaps = 37/1197 (3%)
Strand=Plus/Plus
Query 396 GGTAAGTTCACCATCCAAAG-AGGCCTACAGGAAGCAATTGGCTGAGACCATGAACTTGA 454
||||| |||| | | ||| | | || |||| |||||||||||||||||| ||||| ||||
Sbjct 57 GGTAACTTCAGCGT-CAAGGAAAGCGTACATGAAGCAATTGGCTGAGACTATGAATTTGA 115
Query 455 A-CCACACAAGGATTCTCGCCTTCAGAAACAAACCTCAGGCTCCTGTCGAACTGCTTCCG 513
| | | || | |||||||| ||||||||||||||| | ||| | | | || || |
Sbjct 116 ATCGA-ACCCGCATTCTCGCTTTCAGAAACAAACCTAAAGCT-C--T-G--CT--TT-CT 165
Query 514 AGCAATCACTCTGCTTCTCTTCACCAACAACCCAAATCTGTAAAGCCTCGTCGATACATT 573
|| |||||||||| ||||| ||| ||||| | ||||| ||||||| |||| ||||||||
Sbjct 166 AGTAATCACTCTGATTCTCCTCATGAACAATCTAAATCCGTAAAGCGTCGTAGATACATT 225
Query 574 CCTCAGACTTCTGAGAGAACCTTGGATGCACCTGACATTGTTGACGATTTCTACCTCAAC 633
||||||| | ||||| || |||||||||||||| |||||| || || |||||||| |||
Sbjct 226 CCTCAGAATAGTGAGAAAATCTTGGATGCACCTGGCATTGTGGATGACTTCTACCTTAAC 285
Query 634 TTGCTGGACTGGGGAAGTGCAAATGTCTTAGCCATAGCGTTGGACCACACTGTCTACTTG 693
||| |||||||||| ||| | |||||||||||| |||| |||| |||| || | ||||||
Sbjct 286 TTGTTGGACTGGGGTAGTTCTAATGTCTTAGCCCTAGCTTTGGGCCACTCTATTTACTTG 345
Query 694 TGGGATGCTTCCACTGGTTCTACATCTGA-GCTTGTGACCATTGATGAGGAGAAGGGACC 752
|||||||||| | || |||||||||| | ||||||||| |||||||| |||||||||||
Sbjct 346 CGGGATGCTTCTAGTGATTCTACATCT-ATGCTTGTGACTATTGATGAAGAGAAGGGACC 404
Query 753 TGTCACAAGTATCAACTGGGCT-CCTGATGGTCGTCA-TGTTGCAGTTGGACTCAACAAC 810
|||||||||||| |||| || | | |||||| || | | | ||| |||| || |||||
Sbjct 405 TGTCACAAGTATTAACT-GGATGCAAGATGGTTGT-ACTCTCGCAATTGGTCTTGACAAC 462
Query 811 TCTGAAGTCCAGCTGTGGGATTCTGCATCCAACCGTCAACTGAGAACATTAAAG-GGTGG 869
|||||||| ||| | ||||||||||| || || |||||||||||||||| || |||||
Sbjct 463 TCTGAAGTGCAGATTTGGGATTCTGCTTCGAATAGTCAACTGAGAACATT-GAGAGGTGG 521
Query 870 TCACCAGTCAAGAGTAGGATCACTGGCATGGAACAATCATATCCTTACTACTGGAGGAAT 929
||||||| |||||||||||||| | |||||||||||||| ||||| || ||||||||||
Sbjct 522 TCACCAGACAAGAGTAGGATCATTAGCATGGAACAATCACATCCTAACAACTGGAGGAAG 581
Query 930 GGATGGACTGATCATCAACAATGATGTGAGGATCAGATCACCCATTGTGGAAACTTAC-A 988
||||||| |||||||||||||||||||||||||||||| | ||||||| || ||||
Sbjct 582 GGATGGAAAAATCATCAACAATGATGTGAGGATCAGATCATCAATTGTGGGAAGTTACTT 641
Query 989 GAGGTCACACTCAAGAAGTTTGTGGGCTCAAGTGGTCAGGATCT-GGACAACAACTAGCA 1047
| ||||||||| | || |||||||| || |||||||||| |||| ||| ||||| |||||
Sbjct 642 G-GGTCACACTGATGAGGTTTGTGGTCTTAAGTGGTCAGAATCTGGGA-AACAATTAGCA 699
Query 1048 AGTGGTGGCAACGACAATGTGGTACACATCTGGGATCGTTCTGTCGCTTCCTCAAACTCA 1107
|||||||| |||||||| || |||||||| |||||||||||| |||| ||||||||||||
Sbjct 700 AGTGGTGGTAACGACAAGGTAGTACACATATGGGATCGTTCTCTCGCATCCTCAAACTCA 759
Query 1108 ACCA-CACAATGGCTGCACAGGCTTGAGGAACATACATCTGCTGTGAAGGCTCTTGCGTG 1166
|| | | ||||| |||| ||| |||||| ||||||| ||||| ||| |||||||| ||
Sbjct 760 ACTAGGA-AATGGTTGCAGAGGTTTGAGGGACATACAGCTGCTACGAAAGCTCTTGCATG 818
Query 1167 GTGCCCTTTCCAAGCGAATTTGCTTGCAACTGGTGGTGGTGGAGGAGACAGGACGATAAA 1226
||| || |||||||||||||||||||||||||||||||||| |||||| ||||| || ||
Sbjct 819 GTGTCCATTCCAAGCGAATTTGCTTGCAACTGGTGGTGGTGTAGGAGATAGGACTATTAA 878
Query 1227 GTTCTGGAATACTCACACTGGGGCTTGCTTGAATTCAGTAGACACTGGTTCCCAAGTTTG 1286
|||||||||||| |||||||| |||||||||||||||||||| ||||| || ||||||||
Sbjct 879 GTTCTGGAATACACACACTGGTGCTTGCTTGAATTCAGTAGAAACTGGCTCTCAAGTTTG 938
Query 1287 TTCGTTGTTATGGAGCAAGAATGAAAGAGAGTTGCTTAGCTCACATGGGTTTACACAGAA 1346
||| ||||||||||| || || ||||||||||||||||| ||||||||||||||||||||
Sbjct 939 TTCATTGTTATGGAGTAATAAGGAAAGAGAGTTGCTTAGTTCACATGGGTTTACACAGAA 998
Query 1347 TCAGCTTACACTTTGGAAGTACCCATCCATGGTGAAAATGGCTGAGCTCACTGGTCATAC 1406
|||||||||||||||||||| ||||| ||| ||||||| ||||| |||| |||||||||
Sbjct 999 CCAGCTTACACTTTGGAAGTATCCATCTATGTTGAAAATAGCTGAACTCAATGGTCATAC 1058
Query 1407 ATCAAGAGTTCTATATATGGCCCAGAGTCCAGATGGTTGTACTGTAGCTTCAGCAGCAGG 1466
|||||||||||| |||||||| |||||||| |||||||||||||| ||||||||||||||
Sbjct 1059 ATCAAGAGTTCTTTATATGGCACAGAGTCCGGATGGTTGTACTGTGGCTTCAGCAGCAGG 1118
Query 1467 AGACGAGACCCTGAGGTTTTGGAACGTTTTTGGAGTACCAG-AG-ACTG-C-a--aaaaa 1520
||||||||| || ||| ||||||| ||||||||||||||| | | | | | |||||
Sbjct 1119 AGACGAGACTCTTAGGCTTTGGAATGTTTTTGGAGTACCACCACCAAAGACCACCAAAAA 1178
Query 1521 aGCTGCACCAAAAGCAG-T-TGCCGAGCCATTTTCTCATGTGAATCGTATTCGATGA 1575
|||||| ||||||||| | ||| || |||||||||||||||| ||||||| |||
Sbjct 1179 AGCTGCTCCAAAAGCATATCTGCAGAT--ATTTTCTCATGTGAATTGTATTCGTTGA 1233
> Ahg347582 jgi|Araly1|347582|fgenesh1_pg.C_scaffold_5000974
Length=1359
Score = 1066 bits (577), Expect = 0.0
Identities = 1104/1352 (82%), Gaps = 62/1352 (5%)
Strand=Plus/Plus
Query 249 TCGGTGCCCACTTCAA-GAACACTTTCTTCCC-AGAAAAAATTCCAAGGAAAA-TCTGGA 305
||| |||||||||||| ||| |||| || ||| || || | |||||| ||||| || ||
Sbjct 45 TCGATGCCCACTTCAACGAA-ACTTCCTCCCCAAG-AATACTTCCAAAGAAAACCCT-GA 101
Query 306 CAGGTTCATACCGAATAGATCAGCGATGAATTTTGACTATGCTCACTTTGCC--CTCACT 363
||||| ||||| || ||||||| ||| |||| |||||||||||| || || || ||
Sbjct 102 AAGGTTTATACCAAACCGATCAGCCATGGATTTCGACTATGCTCAC-TT-CCAGCTTACG 159
Query 364 GAAGAAAGAAAAGGT-AAGGATCA-ATCTGCAACGGTAAG-T--TCACCATCCAA-AGAG 417
|||| ||| ||| || || ||| | | | ||| |||||| | ||||||| ||| |||
Sbjct 160 GAAGGAAG-AAACGTGAAAGATGAGA-CAACAAAGGTAAGATCATCACCAT-CAAGAGAA 216
Query 418 GCCTACAGGAAGCAATTGGCTGAGACCATGAACT-TGAACCACACAAGGATTCTCGCCTT 476
|| |||||||||||||| |||||||| ||||| | |||| | ||| |||||||||||||
Sbjct 217 GCTTACAGGAAGCAATTAGCTGAGACAATGAA-TCTGAATCGCACTCGGATTCTCGCCTT 275
Query 477 CAGAAACAAACCTCAGGCTCCTGTCGAACTGCTTCCGAGCAATCACTCTG---CTTCTCT 533
|| ||||||||||| ||||| ||| | | ||||| || | ||||||| ||||||
Sbjct 276 TAGGAACAAACCTCAAGCTCCGGTCCAGTTACTTCCCCGCGAGCACTCTGTTTATTCTCT 335
Query 534 TCACCAACAACCCAAATCTGTAAAGCCTCGTCGATACATTCCTCAGACTT-CTGAGAGAA 592
| |||||||||| ||||| |||||||| || ||||||| ||||||| || | ||||||
Sbjct 336 TTACCAACAACCTAAATCCGTAAAGCCGCGAAGATACATCCCTCAGAATTGC-GAGAGAG 394
Query 593 CCTTGGATGCACCTGACATTGTTGACGA-TTTCTACCTCAACTTGCTGGACTGGGGAAGT 651
| |||||||||||||| ||||| || || ||| ||||| |||||||| || ||||| |||
Sbjct 395 CGTTGGATGCACCTGATATTGTGGATGACTTT-TACCTTAACTTGCTTGATTGGGGCAGT 453
Query 652 GCAAATGTCTTAGCCATAGCGTTGGACCACACTGTCTACT-TGTGGGATGCTTCCACTGG 710
|| ||||| ||||| ||||| |||| | ||||| || | | ||||||||||| | |||
Sbjct 454 GCTAATGTTTTAGCTATAGCTTTGGGTCGTACTGTGTA-TCTATGGGATGCTTCTAGTGG 512
Query 711 TTCTACATCTGAGCTTGTGACCATTGATGAGGAGAAGGGACCTGTCACAAGTATCAACTG 770
|||| |||||||||||||| ||||||| || | ||||||||| |||||||| |||||
Sbjct 513 TTCTGTTTCTGAGCTTGTGACTGTTGATGAAGATATGGGACCTGTTACAAGTATTAACTG 572
Query 771 GGCTCCTGATGGTCGTCATGTTGCAGTTGGACTCAACAACTCTGAAGTCCAGCTGTGGGA 830
||| | ||||||| | || | || ||||| || | ||||||||||||||||| |||||
Sbjct 573 GGCACAAGATGGTCTTAATCTCGCGGTTGGGCTTGATAACTCTGAAGTCCAGCTTTGGGA 632
Query 831 TTCTGCATCCAACCGTCAACTGAGAACATTAAAGGGTGGTCACCAGTCAAGAGTAGGATC 890
||||| | | | ||| || ||||||| || |||||||||||||||||||||||||||||
Sbjct 633 TTCTGTAGCTAGTCGTAAAGTGAGAACGTTGAAGGGTGGTCACCAGTCAAGAGTAGGATC 692
Query 891 ACTGGCATGGAACAATCATATCCTTA-CTACTGGAGGAATGGATGG-ACTGATCATCAAC 948
| |||| ||||||||||||||| ||| | || ||||| |||||||| | ||| || |||
Sbjct 693 ATTGGCGTGGAACAATCATATC-TTAACAACGGGAGGTATGGATGGGAA-GATTATTAAC 750
Query 949 AATGATGTGA-GGATCAGATCACCCATTGTGGAAACTTACAGAGGTCACACTCAAGAAGT 1007
|| ||||| | || | ||||||| | ||||| |||||||||| |||||||||| || ||
Sbjct 751 AACGATGT-ACGGGTTAGATCACACGTTGTGAAAACTTACAGGGGTCACACTCTTGAGGT 809
Query 1008 TTGTGGGCTCAAGTGGTCAG-GATCTGGACAACAACTAGCAAGTGGTGGCAACGACAATG 1066
||||||| | |||||||||| | |||||||| || ||||||||||||| |||||||||
Sbjct 810 TTGTGGGTTGAAGTGGTCAGAG-TCTGGACAGCATTTAGCAAGTGGTGGAAACGACAATT 868
Query 1067 TGGTACACATCTGGGATCGTTCTGTCGCTTCCTCAAACTCAACCACACAATGGCTGCACA 1126
|||| ||| | ||||| | |||| | | || | | | |||| |
Sbjct 869 TGGTTCACGTATGGGAACATTCT-----------A--C-CAGGCGGTCT-T---TGCATA 910
Query 1127 GGCTTGAGGAACATACATCTGCTGTGAAGGCTCTTGCGTGGTGCCCTTTCCAAGC-GAAT 1185
|| |||||||||| |||||||| || || || || || ||||||||||| ||| | | |
Sbjct 911 GGTTTGAGGAACACACATCTGCGGTAAAAGCACTGGCTTGGTGCCCTTTTCAATCAGG-T 969
Query 1186 TTGCTTGCAACTGGTGGTGGTGGAGGAGACAGGACGATAAAGTTCTGGAATACTC-ACAC 1244
|| |||||||||||||||||||||| ||| ||||||||||||||||||||||||| | ||
Sbjct 970 TTACTTGCAACTGGTGGTGGTGGAGAAGATAGGACGATAAAGTTCTGGAATACTCGA-AC 1028
Query 1245 TGGGGCTTGCTTGAATTCAGTAGACACTGGTTCCCAAGTTTGTTCGTTGTTATGGAGCAA 1304
|| |||||||||||||| ||||||||||| || ||||||||||| ||| ||||||||||
Sbjct 1029 AGGAGCTTGCTTGAATTCGGTAGACACTGGCTCACAAGTTTGTTCTTTGATATGGAGCAA 1088
Query 1305 GAATGAAAGAGAGTTGCTTAGCTCACATGGGTTTACACAGAATCAGCTTACACTTTGGAA 1364
||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 1089 GAAGGAAAGAGAGTTGCTTAGCTCACATGGGTTTACTCAGAACCAGCTTACACTTTGGAA 1148
Query 1365 GTACCCATCCATGGTGAAAATGGCTGAGCTCACTGGTCATACATCAAGAGTTCTATATAT 1424
|||||||||||||||||||||||||||||||| ||||||||||||| | |||||||||||
Sbjct 1149 GTACCCATCCATGGTGAAAATGGCTGAGCTCAATGGTCATACATCACGCGTTCTATATAT 1208
Query 1425 GGCCCAGAGTCCAGATGGTTGTACTGTAGCTTCAGCAGCAGGAGACGAGACCCTGAGGTT 1484
| | |||||||| ||||||||||| ||||||||||||||||| |||||||| |||||| |
Sbjct 1209 GTCACAGAGTCCGGATGGTTGTACCGTAGCTTCAGCAGCAGGGGACGAGACTCTGAGGCT 1268
Query 1485 TTGGAACGTTTTTGGAGTACCAGAG-ACTGCaaaaaaaGCTGCACCAAAAGCAGTTGCCG 1543
|||||| |||||||||||||||||| | ||| ||||||||||| |||||||||||| ||
Sbjct 1269 TTGGAATGTTTTTGGAGTACCAGAGGA-TGCTAAAAAAGCTGCTCCAAAAGCAGTTCCCC 1327
Query 1544 AGCCATTTTCTCATGTGAATCGTATTCGATGA 1575
| ||||||||| |||| ||||||||||| |||
Sbjct 1328 AACCATTTTCTAATGTAAATCGTATTCGTTGA 1359
> Ahg344325 jgi|Araly1|344325|fgenesh1_pg.C_scaffold_4000667
Length=1359
Score = 1044 bits (565), Expect = 0.0
Identities = 1104/1356 (81%), Gaps = 70/1356 (5%)
Strand=Plus/Plus
Query 249 TCGGTGCCCACTTCAA-GAACACTTTCTTCCC-AGAAAAAATTCCAAGGAAAA-TCTGGA 305
||| |||||||||||| ||| |||| || ||| || || | |||||| ||||| || ||
Sbjct 45 TCGATGCCCACTTCAACGAA-ACTTCCTCCCCAAG-AATACTTCCAAAGAAAACCCT-GA 101
Query 306 CAGGTTCATACCGAATAGATCAGCGATGAATTTTGACTATGCTCACTTTGCC--CTCACT 363
||||| ||||| || |||||||| ||| |||| |||||||||||| || || || ||
Sbjct 102 AAGGTTTATACCAAACAGATCAGCCATGGATTTCGACTATGCTCAC-TT-CCAGCTTACG 159
Query 364 GAAGAAAGAAAAGGT-AAGGATC-AATCTGCAACGGTAAG-T--TCACCATCCAA-AGAG 417
|||| ||| ||| || || || | | | ||| |||||| | ||||||| ||| |||
Sbjct 160 GAAGGAAG-AAACGTGAAAGA-CGAGGCAACAAAGGTAAGTTCATCACCAT-CAAGAGAA 216
Query 418 GCCTACAGGAAGCAATTGGCTGAGACCATGAACT-TGAACCACACAAGGATTCTCGCCTT 476
|| |||||||||||||| |||||||| ||||| | |||| | ||| |||||||||||||
Sbjct 217 GCTTACAGGAAGCAATTAGCTGAGACAATGAA-TCTGAATCGCACTCGGATTCTCGCCTT 275
Query 477 CAGAAACAAACCTCAGGCTCCTGTCGAACTGCTT-CC-GAGCAATCACTCTG---CTTCT 531
||| ||||||||||| | || ||| | | ||| || ||| || ||||||| ||||
Sbjct 276 CAGGAACAAACCTCAAACCCCGGTCCAGTTACTTCCCAGAG-AA-CACTCTGTTTATTCT 333
Query 532 CTTCACCAACAACCCAAATCTGTAAAGCCTCGTCGATACATTCCTCAGACTT-CTGAGAG 590
||| |||||||||| ||||| |||||||| || ||||||| ||||||| || | |||||
Sbjct 334 CTTTACCAACAACCTAAATCCGTAAAGCCGCGAAGATACATCCCTCAGAATTGC-GAGAG 392
Query 591 AACCTTGGATGCACCTGACATTGTTGACGA-TTTCTACCTCAACTTGCTGGACTGGGGAA 649
| | |||||||||||||| ||||| || || ||| ||||| |||||||| || ||||| |
Sbjct 393 AGCGTTGGATGCACCTGATATTGTGGATGACTTT-TACCTTAACTTGCTTGATTGGGGCA 451
Query 650 GTGCAAATGTCT-TAGCCATAGCGTTGGACCACACTGTCTACT-TGTGGGATGCTTCCAC 707
|||| ||||| | ||||||| || |||| || ||||||| | | ||||||||||| |
Sbjct 452 GTGCTAATGT-TGTAGCCATTGCATTGGGCCGTTCTGTCTA-TCTATGGGATGCTTCTAG 509
Query 708 TGGTTCTACATCTGAGCTTGTGACCATTGATGAGGAGAAGGGACCTGTCACAAGTATCAA 767
||||||| |||||||||||||| ||||||| || | ||||||||| |||||||| ||
Sbjct 510 TGGTTCTGTTTCTGAGCTTGTGACTGTTGATGAAGATATGGGACCTGTTACAAGTATTAA 569
Query 768 CTGGGCTCCTGATGGTCGTCATGTTGCAGTTGGACTCAACAACTCTGAAGTCCAGCTGTG 827
|||||| | ||||||| | || | || ||||| || | ||||||||||| ||||| ||
Sbjct 570 CTGGGCACAAGATGGTCTTAATCTCGCGGTTGGGCTTGATAACTCTGAAGTACAGCTTTG 629
Query 828 GGATTCTGCATCCAACCGTCAACTGAGAACATTAAAGGGTGGTCACCAGTCAAGAGTAGG 887
|||||||| | | | ||| || ||||||| || |||| |||||| ||||||||||||||
Sbjct 630 GGATTCTGTAGCTAGTCGTAAAGTGAGAACGTTGAAGGATGGTCATCAGTCAAGAGTAGG 689
Query 888 ATCACTGGCATGGAACAATCATATCCTT-ACTACTGGAGGAATGGAT-GGACTGATCATC 945
|||| |||| ||||||| |||||| ||| || || ||||| |||||| ||| ||||||
Sbjct 690 ATCATTGGCGTGGAACAGTCATAT-CTTAACAACGGGAGGTATGGATGGGA-AGATCAT- 746
Query 946 A-ACAATGATGTGA-GGATCAGATCACCCATTGTGGAAACTTACAGAGGTCACACTCAAG 1003
| |||| ||||| | || | ||||||| | ||||| |||||||||| ||||| |||| ||
Sbjct 747 AGACAACGATGT-ACGGGTTAGATCACACGTTGTGAAAACTTACAGGGGTCATACTCTAG 805
Query 1004 AAGTTTGTGGGCTCAAGTGGTCAGGATCTGGACAACAACTAGCAAGTGGTGGCAACGACA 1063
| ||||||||| | |||||||||| ||||||||| || ||||||| |||||||| || |
Sbjct 806 AGGTTTGTGGGTTGAAGTGGTCAGAATCTGGACAGCATTTAGCAAGCGGTGGCAATGAAA 865
Query 1064 ATG-TGGTACACATCTGGGATCGTTCTGTCGCTTCCTCAAACTCAACCACACAATGGCTG 1122
||| || || || | ||||| | | | || || ||| | | | ||
Sbjct 866 ATGTTGTTA-ACGTATGGGA-----C--T-G-TT-CT---ACT-GGGCGGTC--T--TTG 906
Query 1123 CACAGGCTTGAGGAACATACATCTGCTGTGAAGGCTCTTGCGTGGTGCCCTTTCCAAGCG 1182
|| ||| || ||||||| |||||||| || || ||||| || ||||||||||| ||| |
Sbjct 907 CATAGGTTTCAGGAACACACATCTGCGGTTAAAGCTCTGGCCTGGTGCCCTTTTCAATC- 965
Query 1183 A-ATTTGCTTGCAACTGGTGGTGGTGGAGGAGACAGGACGATAAAGTTCTGGAATACTC- 1240
| ||| |||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 966 AGGTTTACTTGCAACTGGTGGTGGTGGAGAAGATAGGACGATAAAGTTCTGGAATACTCG 1025
Query 1241 ACACTGGGGCTTGCTTGAATTCAGTAGACACTGGTTCCCAAGTTTGTTCGTTGTTATGGA 1300
| || || |||||||||||||| ||||||||||| || ||||||||||| ||| ||||||
Sbjct 1026 A-ACAGGAGCTTGCTTGAATTCGGTAGACACTGGCTCACAAGTTTGTTCTTTGATATGGA 1084
Query 1301 GCAAGAATGAAAGAGAGTTGCTTAGCTCACATGGGTTTACACAGAATCAGCTTACACTTT 1360
|||| || |||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 1085 GCAACAAGGAAAGAGAGTTGCTTAGCTCACATGGGTTTACTCAGAACCAGCTTACACTTT 1144
Query 1361 GGAAGTACCCATCCATGGTGAAAATGGCTGAGCTCACTGGTCATACATCAAGAGTTCTAT 1420
|||||||||||||||||||||||||||||||||||| ||||||||||||| | |||||||
Sbjct 1145 GGAAGTACCCATCCATGGTGAAAATGGCTGAGCTCAATGGTCATACATCACGCGTTCTAT 1204
Query 1421 ATATGGCCCAGAGTCCAGATGGTTGTACTGTAGCTTCAGCAGCAGGAGACGAGACCCTGA 1480
||||| | |||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1205 ATATGACACAGAGTCCGGATGGTTGTACTGTAGCTTCAGCAGCAGGAGACGAGACTCTGA 1264
Query 1481 GGTTTTGGAACGTTTTTGGAGTACCAGAG-ACTGCaaaaaaaGCTGCACCAAAAGCAGTT 1539
|||||||||| |||||||||||||||||| | ||| ||||||||||| ||||||||||||
Sbjct 1265 GGTTTTGGAATGTTTTTGGAGTACCAGAGGA-TGCTAAAAAAGCTGCTCCAAAAGCAGTT 1323
Query 1540 GCCGAGCCATTTTCTCATGTGAATCGTATTCGATGA 1575
|| | ||||||||| |||| ||||||||||| |||
Sbjct 1324 CCCCAACCATTTTCTAATGTAAATCGTATTCGTTGA 1359
> Ahg353278 jgi|Araly1|353278|fgenesh1_pg.C_scaffold_7000451
Length=384
Score = 398 bits (215), Expect = 9e-110
Identities = 258/278 (93%), Gaps = 5/278 (2%)
Strand=Plus/Plus
Query 1199 GTGGTGGTGGAGGAGACAGGACGAT-AAAGTTCTGGAATACTCACACTGGGGCTTGCTTG 1257
|||||||||||||||| |||| ||| ||| ||||||||||||||||||||||||||||||
Sbjct 101 GTGGTGGTGGAGGAGATAGGAAGATCAAA-TTCTGGAATACTCACACTGGGGCTTGCTTG 159
Query 1258 AATTCAGTAGACACTGGTTCCCAAGTTTGTTCGTTGTTATGGAGCAAGAATGAAAGAGAG 1317
||||||||||||||||| || ||||||||||||||||| |||||||||||||||| ||||
Sbjct 160 AATTCAGTAGACACTGGCTCTCAAGTTTGTTCGTTGTTGTGGAGCAAGAATGAAACAGAG 219
Query 1318 TTGCTTAGCTCACATGGGTTTACACAGAATCAGCTTACACTTTGGAAG--T-ACCCATCC 1374
|||||||||||||| |||||||||||||||||||| |||||||||||| | | ||||||
Sbjct 220 TTGCTTAGCTCACACGGGTTTACACAGAATCAGCTCACACTTTGGAAGTATGATCCATCC 279
Query 1375 ATGGTGAAAATGGCTGAGCTCACTGGTCATACATCAAGAGTTCTATATATGGCCCAGAGT 1434
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 280 ATGGTGAAAATGGCTGAGCTCACTGGTCATACATCAAGAGTTCTGTATATGGCCCAGATT 339
Query 1435 CCAGATGGTTGTACTGTAGCTTCAGCAGCAGGAGACGA 1472
|| ||||||||||| |||||||||||| ||| ||||||
Sbjct 340 CCTGATGGTTGTACCGTAGCTTCAGCACCAGCAGACGA 377
> Ahg489532 jgi|Araly1|489532|fgenesh2_kg.6__2666__AT5G27945.1
Length=1290
Score = 392 bits (212), Expect = 4e-108
Identities = 272/301 (90%), Gaps = 4/301 (1%)
Strand=Plus/Plus
Query 1227 GTTCTGGAATACTCACACTGGGGCTTGCTTGAATTCAGTAGACACTGGTTCCCAAGTTTG 1286
||||||||||| ||||||||||||||||||||||||||||| ||||| || ||||||||
Sbjct 956 GTTCTGGAATA--CACACTGGGGCTTGCTTGAATTCAGTAGAAACTGGCTCTCAAGTTTG 1013
Query 1287 TTCGTTGTTATGGAGCAAGAA-TGAAAGAGAGTTGCTTAGCTCACATGGGTTTACACAGA 1345
||| ||||||||||| || || ||||||| |||| |||||||||||||||||||||||||
Sbjct 1014 TTCATTGTTATGGAG-AAAAAGTGAAAGACAGTTACTTAGCTCACATGGGTTTACACAGA 1072
Query 1346 ATCAGCTTACACTTTGGAAGTACCCATCCATGGTGAAAATGGCTGAGCTCACTGGTCATA 1405
|||||||||||||||||||||| ||||| ||| ||||||||||||| |||||||||||||
Sbjct 1073 ATCAGCTTACACTTTGGAAGTATCCATCTATGTTGAAAATGGCTGAACTCACTGGTCATA 1132
Query 1406 CATCAAGAGTTCTATATATGGCCCAGAGTCCAGATGGTTGTACTGTAGCTTCAGCAGCAG 1465
||||||||||||| |||||||| || ||||| ||||||||||| || |||||||||||||
Sbjct 1133 CATCAAGAGTTCTTTATATGGCACAAAGTCCGGATGGTTGTACCGTGGCTTCAGCAGCAG 1192
Query 1466 GAGACGAGACCCTGAGGTTTTGGAACGTTTTTGGAGTACCAGAGACTGCaaaaaaaGCTG 1525
|||||||||| || ||||||||||| |||| ||||||||||||||| | || |||||||
Sbjct 1193 GAGACGAGACTCTTAGGTTTTGGAATGTTTCTGGAGTACCAGAGACCACCAAGAAAGCTG 1252
Query 1526 C 1526
|
Sbjct 1253 C 1253
Score = 169 bits (91), Expect = 8e-41
Identities = 140/164 (85%), Gaps = 2/164 (1%)
Strand=Plus/Plus
Query 959 GGATCAGATCACCCATTGTGGAAACTTACAGAGG-TCACACTCAAGAAGTTTGTGGGCTC 1017
|||| || ||| ||||||||| |||||| | || |||||||||||| |||||||| ||
Sbjct 746 GGATGAGGTCATCCATTGTGGGAACTTA-TGTGGTTCACACTCAAGAGGTTTGTGGTCTT 804
Query 1018 AAGTGGTCAGGATCTGGACAACAACTAGCAAGTGGTGGCAACGACAATGTGGTACACATC 1077
|||||| | |||||||||||||||||||||||||||| |||| |||||| ||||||||
Sbjct 805 AAGTGGGAAAGATCTGGACAACAACTAGCAAGTGGTGGTAACGTCAATGTAGTACACATA 864
Query 1078 TGGGATCGTTCTGTCGCTTCCTCAAACTCAACCACACAATGGCT 1121
|||||| |||||||| | |||||||||||||| | ||||||||
Sbjct 865 TGGGATTGTTCTGTCTCCTCCTCAAACTCAACTAGGCAATGGCT 908
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65324770175
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5