BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G33270.1
Length=1769
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491360 jgi|Araly1|491360|fgenesh2_kg.7__793__AT4G33270.1 2283 0.0
Ahg489619 jgi|Araly1|489619|fgenesh2_kg.6__2753__AT5G27570.1 1136 0.0
Ahg347582 jgi|Araly1|347582|fgenesh1_pg.C_scaffold_5000974 1088 0.0
Ahg344325 jgi|Araly1|344325|fgenesh1_pg.C_scaffold_4000667 1044 0.0
Ahg353278 jgi|Araly1|353278|fgenesh1_pg.C_scaffold_7000451 420 2e-116
Ahg489532 jgi|Araly1|489532|fgenesh2_kg.6__2666__AT5G27945.1 409 4e-113
> Ahg491360 jgi|Araly1|491360|fgenesh2_kg.7__793__AT4G33270.1
Length=1494
Score = 2283 bits (1236), Expect = 0.0
Identities = 1350/1406 (96%), Gaps = 3/1406 (0%)
Strand=Plus/Plus
Query 184 ttgtttttgtttgGTGATAATGGATGCAGGTATGAACAACACTTCTTCTCACTACAAGAC 243
|||||| ||||||||||||||||||||||| |||||| ||| ||||||||||||||| |
Sbjct 92 TTGTTTGTGTTTGGTGATAATGGATGCAGGGATGAAC-ACA--TCTTCTCACTACAAGGC 148
Query 244 GCAGGCTCGTTGCCCTCTTCAAGAACACTTTCTTCCCAGGAAACCTTCTAAGGAAAACCT 303
||||||||| ||||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct 149 GCAGGCTCGGTGCCCTCTTCAAGAACACTTTCTTCCCAGGAAAACTTCCAAGGAAAACCT 208
Query 304 GGACAGGTTCATACCGAACAGATCAGCGATGAATTTTGACTATGCTCACTTTGCCCTCAC 363
||||||||||||||| ||||| ||||| ||| |||| |||||||||||||||||||||||
Sbjct 209 GGACAGGTTCATACCAAACAGGTCAGCCATGGATTTCGACTATGCTCACTTTGCCCTCAC 268
Query 364 TGAAGGAAGAAAAGGTAAGGATCAGACTGCAGCGGTAAGTTCACCATCCAAAGAGGCCTA 423
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 269 TGAAGGAAGAAAAGGTAACGATCAGACTGCAGCGGTAAGTTCACCATCCAAAGAGGCCTA 328
Query 424 CAGGAAGCAATTGGCTGAGACCATGAACTTGAACCACACAAGGATTCTCGCCTTCAGAAA 483
||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||
Sbjct 329 CAGGAAGCAATTGGCTGAGACCATGAATTTGAATCACACCCGGATTCTCGCCTTCAGAAA 388
Query 484 CAAACCTCAGGCTCCTGTCGAACTGCTTCCCAGCAATCACTCTGCTTCTCTTCACCAACA 543
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 389 CAAACCTCAAGCTCCTGTAGAACTGCTTCCCAGCAATCACTCTGCTTCTCTTCACCAACA 448
Query 544 GCCCAAATCTGTAAAGCCTCGTCGATACATTCCTCAGACTTCTGAGAGGACCTTGGATGC 603
||| |||||||||||||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct 449 GCCTAAATCTGTAAAGCCTCGTAGATACATTCCTCAGACTTCTGAGAGAACCTTGGATGC 508
Query 604 ACCTGACATTGTTGACGATTTCTACCTCAACTTGCTGGACTGGGGAAGTGCAAATGTCTT 663
|||||||||||| || ||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 509 ACCTGACATTGTGGATGATTTCTACCTCAACTTGCTGGACTGGGGCAGTGCTAATGTCTT 568
Query 664 AGCCATAGCGTTGGACCACACTGTCTACTTGTGGGATGCTTCCACTGGTTCTACATCTGA 723
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 569 AGCCATAGCCTTGGACCACACTGTCTACTTGTGGGATGCTTCCACTGGTTCTACATCTGA 628
Query 724 GCTTGTGACCATTGATGAGGAGAAGGGACCTGTCACAAGTATCAACTGGGCTCCTGATGG 783
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 629 GCTTGTGACCATTGATGAGGAGAAGGGACCTGTCACAAGTATCAACTGGGCTCCTGATGG 688
Query 784 TCGTCATGTTGCAGTTGGACTCAACAACTCTGAAGTCCAGCTGTGGGATTCTGCATCCAA 843
|||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||
Sbjct 689 TCGTCATGTTGCAGTTGGGCTCAACAACTCTGAAGTCCAGCTTTGGGATTCTGCTTCCAA 748
Query 844 CCGTCAACTGAGAACATTGAAGGGTGGTCACCAGTCACGAGTAGGATCACTGGCATGGAA 903
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 749 CCGTCAACTGAGAACATTGAAGGGTGGTCACCAGTCAAGAGTAGGATCACTGGCATGGAA 808
Query 904 CAATCACATCCTTACTACTGGAGGAATGGATGGACTGATCATCAACAATGATGTGAGGAT 963
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 809 CAATCACATCCTTACTACTGGAGGAATGGATGGACTGATCATTAACAATGATGTGAGGAT 868
Query 964 CAGATCACCCATTGTGGAAACTTACAGAGGTCACACTCAAGAAGTTTGTGGGCTCAAGTG 1023
||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 869 CAGATCACCCATTGTTGAAACTTACAGAGGTCACACTCAAGAGGTTTGTGGGCTAAAGTG 928
Query 1024 GTCAGGATCTGGACAACAACTAGCAAGTGGTGGCAACGACAATGTGGTACACATCTGGGA 1083
||||||||||||||| |||||||||||||| |||||||||||||| |||||||| |||||
Sbjct 929 GTCAGGATCTGGACAGCAACTAGCAAGTGGAGGCAACGACAATGTCGTACACATATGGGA 988
Query 1084 TCGTTCTGTCGCTTCCTCAAACTCAACCACACAATGGCTGCACAGGCTTGAGGAACATAC 1143
||||||||| |||||||||||||||| ||| |||||||||||||| ||||||||||||||
Sbjct 989 TCGTTCTGTTGCTTCCTCAAACTCAAACACGCAATGGCTGCACAGACTTGAGGAACATAC 1048
Query 1144 ATCTGCTGTGAAGGCTCTTGCGTGGTGCCCTTTCCAAGCGAATTTGCTTGCAACTGGTGG 1203
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1049 ATCTGCTGTGAAAGCTCTTGCGTGGTGCCCTTTCCAAGCGAATTTGCTTGCAACTGGTGG 1108
Query 1204 TGGTGGAGGAGACAGGACGATCAAGTTCTGGAATACTCACACTGGGGCTTGCTTGAATTC 1263
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 1109 TGGTGGAGGAGACAGGACGATAAAATTCTGGAATACTCACACTGGGGCTTGCTTGAATTC 1168
Query 1264 AGTAGACACTGGTTCCCAAGTTTGTTCGTTGTTATGGAGCAAGAATGAAAGAGAGTTGCT 1323
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1169 AGTAGACACTGGCTCCCAAGTTTGTTCGTTGTTATGGAGCAAGAATGAAAGAGAGTTGCT 1228
Query 1324 TAGCTCACACGGGTTTACACAGAATCAGCTCACACTTTGGAAGTATCCATCCATGGTGAA 1383
||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1229 TAGTTCACATGGGTTTACACAGAATCAGCTCACACTTTGGAAGTACCCATCCATGGTGAA 1288
Query 1384 AATGGCTGAGCTCACTGGTCATACATCAAGAGTTCTATATATGGCCCAGAGTCCAGATGG 1443
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1289 AATGGCTGAGCTCACTGGTCATACATCAAGAGTTCTATATATGGCCCAGAGTCCTGATGG 1348
Query 1444 TTGTACCGTAGCTTCAGCAGCAGGAGATGAGACTCTGAGGTTCTGGAATGTTTTTGGAGT 1503
||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||
Sbjct 1349 TTGTACCGTAGCTTCAGCAGCAGGAGACGAGACTCTGAGGTTTTGGAACGTTTTTGGAGT 1408
Query 1504 ACCAGAGACCGCCAAAAAAGCTGCTCCAAAAGCAGTTTCCGAGCCATTTTCTCACGTGAA 1563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1409 ACCAGAGACCGCCAAAAAAGCTGCTCCAAAAGCAGTTTCCGAGCCATTTTCTCACGTGAA 1468
Query 1564 TCGTATTCGTTGAAGCTGTGAAGACT 1589
||||||||||||||||||||||||||
Sbjct 1469 TCGTATTCGTTGAAGCTGTGAAGACT 1494
> Ahg489619 jgi|Araly1|489619|fgenesh2_kg.6__2753__AT5G27570.1
Length=1233
Score = 1136 bits (615), Expect = 0.0
Identities = 1054/1262 (84%), Gaps = 46/1262 (4%)
Strand=Plus/Plus
Query 332 ATGAATTTTGACTATGCTCACTTTGCCCTCACTGAAGGAAGAAAAGGTAAGGATCAGACT 391
||| |||| |||||||||| || || || || |||||||||||| | | | || |
Sbjct 1 ATGGATTTCGACTATGCTCCCTACGCTCTTACCGAAGGAAGAAAACCT-A--A--AG-TT 54
Query 392 GCAGCGGTAAGTTCACCATCCAAAG-AGGCCTACAGGAAGCAATTGGCTGAGACCATGAA 450
| | ||||| |||| | | ||| | | || |||| |||||||||||||||||| |||||
Sbjct 55 G-A--GGTAACTTCAGCGT-CAAGGAAAGCGTACATGAAGCAATTGGCTGAGACTATGAA 110
Query 451 CTTGAA-CCACACAAGGATTCTCGCCTTCAGAAACAAACCTCAGGCTCCTGTCGAACTGC 509
||||| | | || | |||||||| ||||||||||||||| | ||| | | | ||
Sbjct 111 TTTGAATCGA-ACCCGCATTCTCGCTTTCAGAAACAAACCTAAAGCT-C--T-G--CT-- 161
Query 510 TTCCCAGCAATCACTCTGCTTCTCTTCACCAACAGCCCAAATCTGTAAAGCCTCGTCGAT 569
|| | || |||||||||| ||||| ||| |||| | ||||| ||||||| |||| |||
Sbjct 162 TT-CTAGTAATCACTCTGATTCTCCTCATGAACAATCTAAATCCGTAAAGCGTCGTAGAT 220
Query 570 ACATTCCTCAGACTTCTGAGAGGACCTTGGATGCACCTGACATTGTTGACGATTTCTACC 629
|||||||||||| | ||||| | |||||||||||||| |||||| || || |||||||
Sbjct 221 ACATTCCTCAGAATAGTGAGAAAATCTTGGATGCACCTGGCATTGTGGATGACTTCTACC 280
Query 630 TCAACTTGCTGGACTGGGGAAGTGCAAATGTCTTAGCCATAGCGTTGGACCACACTGTCT 689
| |||||| |||||||||| ||| | |||||||||||| |||| |||| |||| || | |
Sbjct 281 TTAACTTGTTGGACTGGGGTAGTTCTAATGTCTTAGCCCTAGCTTTGGGCCACTCTATTT 340
Query 690 ACTTGTGGGATGCTTCCACTGGTTCTACATCTGA-GCTTGTGACCATTGATGAGGAGAAG 748
||||| |||||||||| | || |||||||||| | ||||||||| |||||||| ||||||
Sbjct 341 ACTTGCGGGATGCTTCTAGTGATTCTACATCT-ATGCTTGTGACTATTGATGAAGAGAAG 399
Query 749 GGACCTGTCACAAGTATCAACTGGGCT-CCTGATGGTCGTCA-TGTTGCAGTTGGACTCA 806
||||||||||||||||| |||| || | | |||||| || | | | ||| |||| ||
Sbjct 400 GGACCTGTCACAAGTATTAACT-GGATGCAAGATGGTTGT-ACTCTCGCAATTGGTCTTG 457
Query 807 ACAACTCTGAAGTCCAGCTGTGGGATTCTGCATCCAACCGTCAACTGAGAACATTGAAG- 865
||||||||||||| ||| | ||||||||||| || || ||||||||||||||||| ||
Sbjct 458 ACAACTCTGAAGTGCAGATTTGGGATTCTGCTTCGAATAGTCAACTGAGAACATTG-AGA 516
Query 866 GGTGGTCACCAGTCACGAGTAGGATCACTGGCATGGAACAATCACATCCTTACTACTGGA 925
|||||||||||| || ||||||||||| | |||||||||||||||||||| || ||||||
Sbjct 517 GGTGGTCACCAGACAAGAGTAGGATCATTAGCATGGAACAATCACATCCTAACAACTGGA 576
Query 926 GGAATGGATGGACTGATCATCAACAATGATGTGAGGATCAGATCACCCATTGTGGAAACT 985
|||| ||||||| |||||||||||||||||||||||||||||| | ||||||| || |
Sbjct 577 GGAAGGGATGGAAAAATCATCAACAATGATGTGAGGATCAGATCATCAATTGTGGGAAGT 636
Query 986 TAC-AGAGGTCACACTCAAGAAGTTTGTGGGCTCAAGTGGTCAGGATCT-GGACAACAAC 1043
||| | ||||||||| | || |||||||| || |||||||||| |||| ||| |||||
Sbjct 637 TACTTG-GGTCACACTGATGAGGTTTGTGGTCTTAAGTGGTCAGAATCTGGGA-AACAAT 694
Query 1044 TAGCAAGTGGTGGCAACGACAATGTGGTACACATCTGGGATCGTTCTGTCGCTTCCTCAA 1103
||||||||||||| |||||||| || |||||||| |||||||||||| |||| |||||||
Sbjct 695 TAGCAAGTGGTGGTAACGACAAGGTAGTACACATATGGGATCGTTCTCTCGCATCCTCAA 754
Query 1104 ACTCAACCA-CACAATGGCTGCACAGGCTTGAGGAACATACATCTGCTGTGAAGGCTCTT 1162
||||||| | | ||||| |||| ||| |||||| ||||||| ||||| ||| ||||||
Sbjct 755 ACTCAACTAGGA-AATGGTTGCAGAGGTTTGAGGGACATACAGCTGCTACGAAAGCTCTT 813
Query 1163 GCGTGGTGCCCTTTCCAAGCGAATTTGCTTGCAACTGGTGGTGGTGGAGGAGACAGGACG 1222
|| ||||| || |||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 814 GCATGGTGTCCATTCCAAGCGAATTTGCTTGCAACTGGTGGTGGTGTAGGAGATAGGACT 873
Query 1223 ATCAAGTTCTGGAATACTCACACTGGGGCTTGCTTGAATTCAGTAGACACTGGTTCCCAA 1282
|| |||||||||||||| |||||||| |||||||||||||||||||| ||||| || |||
Sbjct 874 ATTAAGTTCTGGAATACACACACTGGTGCTTGCTTGAATTCAGTAGAAACTGGCTCTCAA 933
Query 1283 GTTTGTTCGTTGTTATGGAGCAAGAATGAAAGAGAGTTGCTTAGCTCACACGGGTTTACA 1342
|||||||| ||||||||||| || || ||||||||||||||||| ||||| |||||||||
Sbjct 934 GTTTGTTCATTGTTATGGAGTAATAAGGAAAGAGAGTTGCTTAGTTCACATGGGTTTACA 993
Query 1343 CAGAATCAGCTCACACTTTGGAAGTATCCATCCATGGTGAAAATGGCTGAGCTCACTGGT 1402
||||| ||||| |||||||||||||||||||| ||| ||||||| ||||| |||| ||||
Sbjct 994 CAGAACCAGCTTACACTTTGGAAGTATCCATCTATGTTGAAAATAGCTGAACTCAATGGT 1053
Query 1403 CATACATCAAGAGTTCTATATATGGCCCAGAGTCCAGATGGTTGTACCGTAGCTTCAGCA 1462
||||||||||||||||| |||||||| |||||||| ||||||||||| || |||||||||
Sbjct 1054 CATACATCAAGAGTTCTTTATATGGCACAGAGTCCGGATGGTTGTACTGTGGCTTCAGCA 1113
Query 1463 GCAGGAGATGAGACTCTGAGG-TTCTGGAATGTTTTTGGAGTACCAG-A-----GACCGC 1515
|||||||| |||||||| ||| || ||||||||||||||||||||| | |||| |
Sbjct 1114 GCAGGAGACGAGACTCTTAGGCTT-TGGAATGTTTTTGGAGTACCACCACCAAAGACCAC 1172
Query 1516 CAAAAAAGCTGCTCCAAAAGCAGTTTCCG-AGCCATTTTCTCACGTGAATCGTATTCGTT 1574
|||||||||||||||||||||| | || | || ||||||||| |||||| |||||||||
Sbjct 1173 CAAAAAAGCTGCTCCAAAAGCA-TATCTGCAGATATTTTCTCATGTGAATTGTATTCGTT 1231
Query 1575 GA 1576
||
Sbjct 1232 GA 1233
> Ahg347582 jgi|Araly1|347582|fgenesh1_pg.C_scaffold_5000974
Length=1359
Score = 1088 bits (589), Expect = 0.0
Identities = 1141/1400 (82%), Gaps = 67/1400 (5%)
Strand=Plus/Plus
Query 203 ATGGATGCAGGTATGAACAACACTTCTTCTCACTACAAGACGCAGGCTCGTTGCCCTCTT 262
|||||| ||||||| |||||||||||| |||| |||| | || ||||| ||||| |||
Sbjct 1 ATGGATTCAGGTAT---CAACACTTCTTCACACTTCAAGCCTCAAGCTCGATGCCCACTT 57
Query 263 CAA-GAACACTTTCTTCCCAGGAA-ACCTTCTAAGGAAAA-CCTGGACAGGTTCATACCG 319
||| ||| |||| || |||| ||| | |||| || ||||| ||| || ||||| |||||
Sbjct 58 CAACGAA-ACTTCCTCCCCAAGAATA-CTTCCAAAGAAAACCCT-GAAAGGTTTATACCA 114
Query 320 AACAGATCAGCGATGAATTTTGACTATGCTCACTTTGCC--CTCACTGAAGGAAGAAAAG 377
||| ||||||| ||| |||| |||||||||||| || || || || |||||||| |||
Sbjct 115 AACCGATCAGCCATGGATTTCGACTATGCTCAC-TT-CCAGCTTACGGAAGGAAG-AAAC 171
Query 378 GT-AAGGATCAGACTGCAGCGGTAAG-T--TCACCATCCAA-AGAGGCCTACAGGAAGCA 432
|| || ||| |||| || |||||| | ||||||| ||| ||| || |||||||||||
Sbjct 172 GTGAAAGATGAGACAACAAAGGTAAGATCATCACCAT-CAAGAGAAGCTTACAGGAAGCA 230
Query 433 ATTGGCTGAGACCATGAACT-TGAACCACACAAGGATTCTCGCCTTCAGAAACAAACCTC 491
||| |||||||| ||||| | |||| | ||| ||||||||||||| || ||||||||||
Sbjct 231 ATTAGCTGAGACAATGAA-TCTGAATCGCACTCGGATTCTCGCCTTTAGGAACAAACCTC 289
Query 492 AGGCTCCTGTCGAACTGCTTCCCAGCAATCACTCTG---CTTCTCTTCACCAACAGCCCA 548
| ||||| ||| | | |||||| || | ||||||| ||||||| ||||||| || |
Sbjct 290 AAGCTCCGGTCCAGTTACTTCCCCGCGAGCACTCTGTTTATTCTCTTTACCAACAACCTA 349
Query 549 AATCTGTAAAGCCTCGTCGATACATTCCTCAGACTT-CTGAGAGGA-CCTTGGATGCACC 606
|||| |||||||| || ||||||| ||||||| || | |||| || | |||||||||||
Sbjct 350 AATCCGTAAAGCCGCGAAGATACATCCCTCAGAATTGC-GAGA-GAGCGTTGGATGCACC 407
Query 607 TGACATTGTTGACGA-TTTCTACCTCAACTTGCTGGACTGGGGAAGTGCAAATGTCTTAG 665
||| ||||| || || ||| ||||| |||||||| || ||||| ||||| ||||| ||||
Sbjct 408 TGATATTGTGGATGACTTT-TACCTTAACTTGCTTGATTGGGGCAGTGCTAATGTTTTAG 466
Query 666 CCATAGCGTTGGACCACACTGTCTACT-TGTGGGATGCTTCCACTGGTTCTACATCTGAG 724
| ||||| |||| | ||||| || | | ||||||||||| | ||||||| ||||||
Sbjct 467 CTATAGCTTTGGGTCGTACTGTGTA-TCTATGGGATGCTTCTAGTGGTTCTGTTTCTGAG 525
Query 725 CTTGTGACCATTGATGAGGAGAAGGGACCTGTCACAAGTATCAACTGGGCTCCTGATGGT 784
|||||||| ||||||| || | ||||||||| |||||||| |||||||| | ||||||
Sbjct 526 CTTGTGACTGTTGATGAAGATATGGGACCTGTTACAAGTATTAACTGGGCACAAGATGGT 585
Query 785 CGTCATGTTGCAGTTGGACTCAACAACTCTGAAGTCCAGCTGTGGGATTCTGCATCCAAC 844
| | || | || ||||| || | ||||||||||||||||| |||||||||| | | |
Sbjct 586 CTTAATCTCGCGGTTGGGCTTGATAACTCTGAAGTCCAGCTTTGGGATTCTGTAGCTAGT 645
Query 845 CGTCAACTGAGAACATTGAAGGGTGGTCACCAGTCACGAGTAGGATCACTGGCATGGAAC 904
||| || ||||||| ||||||||||||||||||||| ||||||||||| |||| ||||||
Sbjct 646 CGTAAAGTGAGAACGTTGAAGGGTGGTCACCAGTCAAGAGTAGGATCATTGGCGTGGAAC 705
Query 905 AATCACATCCTT-ACTACTGGAGGAATGGAT-GGACTGATCATCAACAATGATGTGA-GG 961
||||| || ||| || || ||||| |||||| ||| ||| || ||||| ||||| | ||
Sbjct 706 AATCATAT-CTTAACAACGGGAGGTATGGATGGGA-AGATTATTAACAACGATGT-ACGG 762
Query 962 ATCAGATCACCCATTGTGGAAACTTACAGAGGTCACACTCAAGAAGTTTGTGGGCTCAAG 1021
| ||||||| | ||||| |||||||||| |||||||||| || ||||||||| | |||
Sbjct 763 GTTAGATCACACGTTGTGAAAACTTACAGGGGTCACACTCTTGAGGTTTGTGGGTTGAAG 822
Query 1022 TGGTCAGGA-TCTGGACAACAACTAGCAAGTGGTGGCAACGACAATGTGGTACACATCTG 1080
|||||| || |||||||| || ||||||||||||| ||||||||| |||| ||| | ||
Sbjct 823 TGGTCA-GAGTCTGGACAGCATTTAGCAAGTGGTGGAAACGACAATTTGGTTCACGTATG 881
Query 1081 GGATCGTTCTGTCGCTTCCTCAAACTCAACCACACAATGGCTGCACAGGCTTGAGGAACA 1140
||| | || || || || | | | |||| ||| ||||||||||
Sbjct 882 GGA--------AC-ATT-CT---AC-CAGGCGGTC--T--TTGCATAGGTTTGAGGAACA 923
Query 1141 TACATCTGCTGTGAAGGCTCTTGCGTGGTGCCCTTTCCAAGCGA-ATTTGCTTGCAACTG 1199
|||||||| || || || || || ||||||||||| ||| | | ||| ||||||||||
Sbjct 924 CACATCTGCGGTAAAAGCACTGGCTTGGTGCCCTTTTCAATC-AGGTTTACTTGCAACTG 982
Query 1200 GTGGTGGTGGAGGAGACAGGACGATCAAGTTCTGGAATACTC-ACACTGGGGCTTGCTTG 1258
|||||||||||| ||| |||||||| |||||||||||||||| | || || |||||||||
Sbjct 983 GTGGTGGTGGAGAAGATAGGACGATAAAGTTCTGGAATACTCGA-ACAGGAGCTTGCTTG 1041
Query 1259 AATTCAGTAGACACTGGTTCCCAAGTTTGTTCGTTGTTATGGAGCAAGAATGAAAGAGAG 1318
||||| ||||||||||| || ||||||||||| ||| ||||||||||||| |||||||||
Sbjct 1042 AATTCGGTAGACACTGGCTCACAAGTTTGTTCTTTGATATGGAGCAAGAAGGAAAGAGAG 1101
Query 1319 TTGCTTAGCTCACACGGGTTTACACAGAATCAGCTCACACTTTGGAAGTATCCATCCATG 1378
|||||||||||||| |||||||| ||||| ||||| |||||||||||||| |||||||||
Sbjct 1102 TTGCTTAGCTCACATGGGTTTACTCAGAACCAGCTTACACTTTGGAAGTACCCATCCATG 1161
Query 1379 GTGAAAATGGCTGAGCTCACTGGTCATACATCAAGAGTTCTATATATGGCCCAGAGTCCA 1438
||||||||||||||||||| ||||||||||||| | |||||||||||| | ||||||||
Sbjct 1162 GTGAAAATGGCTGAGCTCAATGGTCATACATCACGCGTTCTATATATGTCACAGAGTCCG 1221
Query 1439 GATGGTTGTACCGTAGCTTCAGCAGCAGGAGATGAGACTCTGAGG-TTCTGGAATGTTTT 1497
||||||||||||||||||||||||||||| || |||||||||||| || |||||||||||
Sbjct 1222 GATGGTTGTACCGTAGCTTCAGCAGCAGGGGACGAGACTCTGAGGCTT-TGGAATGTTTT 1280
Query 1498 TGGAGTACCAGAG-ACCGCCAAAAAAGCTGCTCCAAAAGCAGTTTCCGAGCCATTTTCTC 1556
||||||||||||| | || |||||||||||||||||||||||| || | |||||||||
Sbjct 1281 TGGAGTACCAGAGGAT-GCTAAAAAAGCTGCTCCAAAAGCAGTTCCCCAACCATTTTCTA 1339
Query 1557 ACGTGAATCGTATTCGTTGA 1576
| || |||||||||||||||
Sbjct 1340 ATGTAAATCGTATTCGTTGA 1359
> Ahg344325 jgi|Araly1|344325|fgenesh1_pg.C_scaffold_4000667
Length=1359
Score = 1044 bits (565), Expect = 0.0
Identities = 1136/1403 (81%), Gaps = 73/1403 (5%)
Strand=Plus/Plus
Query 203 ATGGATGCAGGTATGAACAACACTTCTTCTCACTACAAGACGCAGGCTCGTTGCCCTCTT 262
|||||| ||||||| ||||||||||| |||| |||| | || ||||| ||||| |||
Sbjct 1 ATGGATTCAGGTAT---TAACACTTCTTCACACTTCAAGCCTCAAGCTCGATGCCCACTT 57
Query 263 CAA-GAACACTTTCTTCCCAGGAA-ACCTTCTAAGGAAAA-CCTGGACAGGTTCATACCG 319
||| ||| |||| || |||| ||| | |||| || ||||| ||| || ||||| |||||
Sbjct 58 CAACGAA-ACTTCCTCCCCAAGAATA-CTTCCAAAGAAAACCCT-GAAAGGTTTATACCA 114
Query 320 AACAGATCAGCGATGAATTTTGACTATGCTCACTTTGCC--CTCACTGAAGGAAGAAAAG 377
||||||||||| ||| |||| |||||||||||| || || || || |||||||| |||
Sbjct 115 AACAGATCAGCCATGGATTTCGACTATGCTCAC-TT-CCAGCTTACGGAAGGAAG-AAAC 171
Query 378 GT-AAGGATC-AGACTGCAGCGGTAAG-T--TCACCATCCAA-AGAGGCCTACAGGAAGC 431
|| || || | || | || |||||| | ||||||| ||| ||| || ||||||||||
Sbjct 172 GTGAAAGA-CGAGGCAACAAAGGTAAGTTCATCACCAT-CAAGAGAAGCTTACAGGAAGC 229
Query 432 AATTGGCTGAGACCATGAACT-TGAACCACACAAGGATTCTCGCCTTCAGAAACAAACCT 490
|||| |||||||| ||||| | |||| | ||| |||||||||||||||| |||||||||
Sbjct 230 AATTAGCTGAGACAATGAA-TCTGAATCGCACTCGGATTCTCGCCTTCAGGAACAAACCT 288
Query 491 CAGGCTCCTGTCGAACTGCTTCCCAGCA-ATCACTCTG---CTTCTCTTCACCAACAGCC 546
|| | || ||| | | |||||||| | | ||||||| ||||||| ||||||| ||
Sbjct 289 CAAACCCCGGTCCAGTTACTTCCCAG-AGAACACTCTGTTTATTCTCTTTACCAACAACC 347
Query 547 CAAATCTGTAAAGCCTCGTCGATACATTCCTCAGACTT-CTGAGAGGA-CCTTGGATGCA 604
||||| |||||||| || ||||||| ||||||| || | |||| || | |||||||||
Sbjct 348 TAAATCCGTAAAGCCGCGAAGATACATCCCTCAGAATTGC-GAGA-GAGCGTTGGATGCA 405
Query 605 CCTGACATTGTTGACGA-TTTCTACCTCAACTTGCTGGACTGGGGAAGTGCAAATGTCT- 662
||||| ||||| || || ||| ||||| |||||||| || ||||| ||||| ||||| |
Sbjct 406 CCTGATATTGTGGATGACTTT-TACCTTAACTTGCTTGATTGGGGCAGTGCTAATGT-TG 463
Query 663 TAGCCATAGCGTTGGACCACACTGTCTACT-TGTGGGATGCTTCCACTGGTTCTACATCT 721
||||||| || |||| || ||||||| | | ||||||||||| | ||||||| |||
Sbjct 464 TAGCCATTGCATTGGGCCGTTCTGTCTA-TCTATGGGATGCTTCTAGTGGTTCTGTTTCT 522
Query 722 GAGCTTGTGACCATTGATGAGGAGAAGGGACCTGTCACAAGTATCAACTGGGCTCCTGAT 781
||||||||||| ||||||| || | ||||||||| |||||||| |||||||| | |||
Sbjct 523 GAGCTTGTGACTGTTGATGAAGATATGGGACCTGTTACAAGTATTAACTGGGCACAAGAT 582
Query 782 GGTCGTCATGTTGCAGTTGGACTCAACAACTCTGAAGTCCAGCTGTGGGATTCTGCATCC 841
|||| | || | || ||||| || | ||||||||||| ||||| |||||||||| | |
Sbjct 583 GGTCTTAATCTCGCGGTTGGGCTTGATAACTCTGAAGTACAGCTTTGGGATTCTGTAGCT 642
Query 842 AACCGTCAACTGAGAACATTGAAGGGTGGTCACCAGTCACGAGTAGGATCACTGGCATGG 901
| ||| || ||||||| ||||||| |||||| |||||| ||||||||||| |||| |||
Sbjct 643 AGTCGTAAAGTGAGAACGTTGAAGGATGGTCATCAGTCAAGAGTAGGATCATTGGCGTGG 702
Query 902 AACAATCACATCCTT-ACTACTGGAGGAATGGAT-GGACTGATCATCA-ACAATGATGTG 958
|||| ||| || ||| || || ||||| |||||| ||| |||||| | |||| |||||
Sbjct 703 AACAGTCATAT-CTTAACAACGGGAGGTATGGATGGGA-AGATCAT-AGACAACGATGT- 758
Query 959 A-GGATCAGATCACCCATTGTGGAAACTTACAGAGGTCACACTCAAGAAGTTTGTGGGCT 1017
| || | ||||||| | ||||| |||||||||| ||||| |||| ||| ||||||||| |
Sbjct 759 ACGGGTTAGATCACACGTTGTGAAAACTTACAGGGGTCATACTCTAGAGGTTTGTGGGTT 818
Query 1018 CAAGTGGTCAGGATCTGGACAACAACTAGCAAGTGGTGGCAACGACAATG-TGGTACACA 1076
|||||||||| ||||||||| || ||||||| |||||||| || |||| || || ||
Sbjct 819 GAAGTGGTCAGAATCTGGACAGCATTTAGCAAGCGGTGGCAATGAAAATGTTGTTA-ACG 877
Query 1077 TCTGGGATCGTTCTGTCGCTTCCTCAAACTCAACCACACAATGGCTGCACAGGCTTGAGG 1136
| ||||| | | | || || ||| | | | |||| ||| || |||
Sbjct 878 TATGGGA-----C--T-G-TT-CT---ACT-GGGCGGTC--T--TTGCATAGGTTTCAGG 919
Query 1137 AACATACATCTGCTGTGAAGGCTCTTGCGTGGTGCCCTTTCCAAGCGA-ATTTGCTTGCA 1195
|||| |||||||| || || ||||| || ||||||||||| ||| | | ||| ||||||
Sbjct 920 AACACACATCTGCGGTTAAAGCTCTGGCCTGGTGCCCTTTTCAATC-AGGTTTACTTGCA 978
Query 1196 ACTGGTGGTGGTGGAGGAGACAGGACGATCAAGTTCTGGAATACTC-ACACTGGGGCTTG 1254
|||||||||||||||| ||| |||||||| |||||||||||||||| | || || |||||
Sbjct 979 ACTGGTGGTGGTGGAGAAGATAGGACGATAAAGTTCTGGAATACTCGA-ACAGGAGCTTG 1037
Query 1255 CTTGAATTCAGTAGACACTGGTTCCCAAGTTTGTTCGTTGTTATGGAGCAAGAATGAAAG 1314
||||||||| ||||||||||| || ||||||||||| ||| |||||||||| || |||||
Sbjct 1038 CTTGAATTCGGTAGACACTGGCTCACAAGTTTGTTCTTTGATATGGAGCAACAAGGAAAG 1097
Query 1315 AGAGTTGCTTAGCTCACACGGGTTTACACAGAATCAGCTCACACTTTGGAAGTATCCATC 1374
|||||||||||||||||| |||||||| ||||| ||||| |||||||||||||| |||||
Sbjct 1098 AGAGTTGCTTAGCTCACATGGGTTTACTCAGAACCAGCTTACACTTTGGAAGTACCCATC 1157
Query 1375 CATGGTGAAAATGGCTGAGCTCACTGGTCATACATCAAGAGTTCTATATATGGCCCAGAG 1434
||||||||||||||||||||||| ||||||||||||| | |||||||||||| | |||||
Sbjct 1158 CATGGTGAAAATGGCTGAGCTCAATGGTCATACATCACGCGTTCTATATATGACACAGAG 1217
Query 1435 TCCAGATGGTTGTACCGTAGCTTCAGCAGCAGGAGATGAGACTCTGAGGTTCTGGAATGT 1494
||| ||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 1218 TCCGGATGGTTGTACTGTAGCTTCAGCAGCAGGAGACGAGACTCTGAGGTTTTGGAATGT 1277
Query 1495 TTTTGGAGTACCAGAG-ACCGCCAAAAAAGCTGCTCCAAAAGCAGTTTCCGAGCCATTTT 1553
|||||||||||||||| | || |||||||||||||||||||||||| || | |||||||
Sbjct 1278 TTTTGGAGTACCAGAGGAT-GCTAAAAAAGCTGCTCCAAAAGCAGTTCCCCAACCATTTT 1336
Query 1554 CTCACGTGAATCGTATTCGTTGA 1576
|| | || |||||||||||||||
Sbjct 1337 CTAATGTAAATCGTATTCGTTGA 1359
> Ahg353278 jgi|Araly1|353278|fgenesh1_pg.C_scaffold_7000451
Length=384
Score = 420 bits (227), Expect = 2e-116
Identities = 259/274 (95%), Gaps = 3/274 (1%)
Strand=Plus/Plus
Query 1200 GTGGTGGTGGAGGAGACAGGACGATCAAGTTCTGGAATACTCACACTGGGGCTTGCTTGA 1259
|||||||||||||||| |||| |||||| |||||||||||||||||||||||||||||||
Sbjct 101 GTGGTGGTGGAGGAGATAGGAAGATCAAATTCTGGAATACTCACACTGGGGCTTGCTTGA 160
Query 1260 ATTCAGTAGACACTGGTTCCCAAGTTTGTTCGTTGTTATGGAGCAAGAATGAAAGAGAGT 1319
|||||||||||||||| || ||||||||||||||||| |||||||||||||||| |||||
Sbjct 161 ATTCAGTAGACACTGGCTCTCAAGTTTGTTCGTTGTTGTGGAGCAAGAATGAAACAGAGT 220
Query 1320 TGCTTAGCTCACACGGGTTTACACAGAATCAGCTCACACTTTGGAAGTAT---CCATCCA 1376
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 221 TGCTTAGCTCACACGGGTTTACACAGAATCAGCTCACACTTTGGAAGTATGATCCATCCA 280
Query 1377 TGGTGAAAATGGCTGAGCTCACTGGTCATACATCAAGAGTTCTATATATGGCCCAGAGTC 1436
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 281 TGGTGAAAATGGCTGAGCTCACTGGTCATACATCAAGAGTTCTGTATATGGCCCAGATTC 340
Query 1437 CAGATGGTTGTACCGTAGCTTCAGCAGCAGGAGA 1470
| |||||||||||||||||||||||| ||| |||
Sbjct 341 CTGATGGTTGTACCGTAGCTTCAGCACCAGCAGA 374
> Ahg489532 jgi|Araly1|489532|fgenesh2_kg.6__2666__AT5G27945.1
Length=1290
Score = 409 bits (221), Expect = 4e-113
Identities = 277/304 (91%), Gaps = 4/304 (1%)
Strand=Plus/Plus
Query 1228 GTTCTGGAATACTCACACTGGGGCTTGCTTGAATTCAGTAGACACTGGTTCCCAAGTTTG 1287
||||||||||| ||||||||||||||||||||||||||||| ||||| || ||||||||
Sbjct 956 GTTCTGGAATA--CACACTGGGGCTTGCTTGAATTCAGTAGAAACTGGCTCTCAAGTTTG 1013
Query 1288 TTCGTTGTTATGGAGCAAGAA-TGAAAGAGAGTTGCTTAGCTCACACGGGTTTACACAGA 1346
||| ||||||||||| || || ||||||| |||| ||||||||||| |||||||||||||
Sbjct 1014 TTCATTGTTATGGAGAAA-AAGTGAAAGACAGTTACTTAGCTCACATGGGTTTACACAGA 1072
Query 1347 ATCAGCTCACACTTTGGAAGTATCCATCCATGGTGAAAATGGCTGAGCTCACTGGTCATA 1406
||||||| |||||||||||||||||||| ||| ||||||||||||| |||||||||||||
Sbjct 1073 ATCAGCTTACACTTTGGAAGTATCCATCTATGTTGAAAATGGCTGAACTCACTGGTCATA 1132
Query 1407 CATCAAGAGTTCTATATATGGCCCAGAGTCCAGATGGTTGTACCGTAGCTTCAGCAGCAG 1466
||||||||||||| |||||||| || ||||| |||||||||||||| |||||||||||||
Sbjct 1133 CATCAAGAGTTCTTTATATGGCACAAAGTCCGGATGGTTGTACCGTGGCTTCAGCAGCAG 1192
Query 1467 GAGATGAGACTCTGAGGTTCTGGAATGTTTTTGGAGTACCAGAGACCGCCAAAAAAGCTG 1526
|||| |||||||| ||||| |||||||||| |||||||||||||||| |||| |||||||
Sbjct 1193 GAGACGAGACTCTTAGGTTTTGGAATGTTTCTGGAGTACCAGAGACCACCAAGAAAGCTG 1252
Query 1527 CTCC 1530
||||
Sbjct 1253 CTCC 1256
Score = 169 bits (91), Expect = 8e-41
Identities = 140/164 (85%), Gaps = 2/164 (1%)
Strand=Plus/Plus
Query 960 GGATCAGATCACCCATTGTGGAAACTTACAGAGG-TCACACTCAAGAAGTTTGTGGGCTC 1018
|||| || ||| ||||||||| |||||| | || |||||||||||| |||||||| ||
Sbjct 746 GGATGAGGTCATCCATTGTGGGAACTTA-TGTGGTTCACACTCAAGAGGTTTGTGGTCTT 804
Query 1019 AAGTGGTCAGGATCTGGACAACAACTAGCAAGTGGTGGCAACGACAATGTGGTACACATC 1078
|||||| | |||||||||||||||||||||||||||| |||| |||||| ||||||||
Sbjct 805 AAGTGGGAAAGATCTGGACAACAACTAGCAAGTGGTGGTAACGTCAATGTAGTACACATA 864
Query 1079 TGGGATCGTTCTGTCGCTTCCTCAAACTCAACCACACAATGGCT 1122
|||||| |||||||| | |||||||||||||| | ||||||||
Sbjct 865 TGGGATTGTTCTGTCTCCTCCTCAAACTCAACTAGGCAATGGCT 908
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66391297035
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5