BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G33280.1
Length=1062
Score E
Sequences producing significant alignments: (Bits) Value
Ahg888763 jgi|Araly1|888763|Al_scaffold_0007_749 1554 0.0
> Ahg888763 jgi|Araly1|888763|Al_scaffold_0007_749
Length=1020
Score = 1554 bits (841), Expect = 0.0
Identities = 955/1011 (94%), Gaps = 3/1011 (0%)
Strand=Plus/Plus
Query 46 ATGGAAGAGAATTGCGAGGATTGCATGAAATGGGAAGAAGAACTCTACTGGACTCATTTT 105
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGAAGAGAGTTGCGAGGATTGCATGAAATGGGAAGAAGAACTCTACTGGACTCATTTT 60
Query 106 CAAACTCTCCATTTCACTCAGCTCCTCCTTCCTGGTTTCCACAATCGCCTCGTCATACCT 165
||||| |||||||||||||||||||||||||||||||||||| ||||||| | |||||||
Sbjct 61 CAAACCCTCCATTTCACTCAGCTCCTCCTTCCTGGTTTCCACTATCGCCTTGCCATACCT 120
Query 166 CGAAAGTTTTCAACACACTGCAAAAGGAAGCTGCCTCAGATTGTGACTCTCAAAAGTCCA 225
| ||||||||||||||| |||||||||||||| ||||||||||| || ||||||||||||
Sbjct 121 CAAAAGTTTTCAACACATTGCAAAAGGAAGCTACCTCAGATTGTCACCCTCAAAAGTCCA 180
Query 226 AGTGGCGTTACATATAATGTGGGAGTAGAGGAAGATGATGAAAAGACAATGGCTTTTCGT 285
||||||| |||||| | |||| ||||||| |||||||||||||||||| |||||||| ||
Sbjct 181 AGTGGCGCTACATACAGTGTGAGAGTAGATGAAGATGATGAAAAGACACTGGCTTTTGGT 240
Query 286 TTTGGGTGGGACAAGTTTGTGAAAGATCATTCGCTAGAGGAGAATGATCTATTGGTCTTC 345
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TGTGGGTGGGACAAGTTTGTGAAAGATCATTCGCTAGAGGAGAATGATCTATTGGTCTTC 300
Query 346 AAGTTCCATGGAGTGTCTGAGTTTGAAGTGCTTGTTTTCGATGGACAGACTTTATGTGAG 405
|||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 301 AAGTTCCATGGACTGTCTGAGTTTGAAGTGCTGGTTTTCGATGGACAGACTTTATGTGAG 360
Query 406 AAACCTACTTCTTATTTCGTCAGGAAATGTGGGCATGCAGAGAAGACTAAAGCATCTCAC 465
||||| |||||||||||||||||||||||||| |||||||||||||| |||| ||||||
Sbjct 361 AAACCCACTTCTTATTTCGTCAGGAAATGTGGTCATGCAGAGAAGACCAAAGTATCTCAG 420
Query 466 ACCGGTTATGAGCAAGAAGAACATATTAACTCTGACATTGATACAGCATCTGCCCAGCTT 525
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 421 ACCGGTTATGAGCAAGAAGAACATATTAACCCTGACATTGATACAGCATCTGCCCAGCTT 480
Query 526 CCTGTTATATCTCCAACTAGTACAGTACGAGTCAGTGAAGGGAAGTATC--CCC-TTAGC 582
||||||||||||||||||||||||||||||||||||||| ||||||||| ||| |||||
Sbjct 481 CCTGTTATATCTCCAACTAGTACAGTACGAGTCAGTGAAAGGAAGTATCATCCCCTTAGC 540
Query 583 GGTTTTAAGAAGATGCGAAGAGAATTAAGTAATGACAATCTCGATCAAAAAGCTGACGTG 642
||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||||
Sbjct 541 AGTTTTAAGAAGATGCGAGGAGAAATAAGTAATGACAATCTCGATCAAAAAACTGACGTA 600
Query 643 GAGATGATTTCAGCTGGAAGCAATAAGAAAGCCTTATCTCTGGCCAAGAGAGCCATTTCG 702
|||||||||||||||||||||||||| | |||||||||||||||||||||||| |||||
Sbjct 601 GAGATGATTTCAGCTGGAAGCAATAACAGAGCCTTATCTCTGGCCAAGAGAGCTATTTCC 660
Query 703 CCGGATGGTTTCTTGGTGTTCATGAAACGCTCTCATGTGGTATCAAAGTGTTTTCTGACA 762
||||||||||||||||||||||||| |||||||||||| |||| |||||||||||||||
Sbjct 661 CCGGATGGTTTCTTGGTGTTCATGAGACGCTCTCATGTTCTATCGAAGTGTTTTCTGACA 720
Query 763 ATCCCATACAAATGGTGCGTGAAGAACATGCTTATCACACGTCAAGAAGTGGTGATGCAG 822
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 721 ATCCCATACAAATGGTGCGTGAAGAACATGCTTATGGCACGTCAAGAAGTGGTGATGCAG 780
Query 823 GTGGATCAAACGAAATGGGAGATGAAGTTTAACATTTTCGGAGCTCGTGGTAGTGGTGGG 882
|||||||||| ||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct 781 GTGGATCAAAGGAAATGGGACATGAAGTTTAACTTTTTCGGAGCTCGTGGTAGTGGTGGG 840
Query 883 ATTTCAACCGGGTGGAAGAAATTTGTACAAGACAACAACTTGCGCGAAGGTGATGTCTGT 942
|||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 841 ATTTCAACAGGGTGGAAGAAGTTTGTACAAGACAACAACTTGCGCGAAGGTGATGTATGT 900
Query 943 GTGTTTGAGCCAGCCAATTCTGAAACAAAACCGCTTCATCTCAATGTCTATATATTCCGT 1002
|||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 901 GTGTTTGAGCCAGCGAATTCTGTAACAAAACCGCTTCATCTCAATGTCTATATATTCCGT 960
Query 1003 GGTGAAGAAACGGAAAGAACCAACAATGTTGACCCGGTTTACACAATAAGT 1053
||||||||||||||||||| ||||||||||||| ||||| |||||||||||
Sbjct 961 GGTGAAGAAACGGAAAGAAGCAACAATGTTGACTCGGTTCACACAATAAGT 1011
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39533464929
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5