BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G33330.2
Length=1890
Score E
Sequences producing significant alignments: (Bits) Value
Ahg328405 jgi|Araly1|328405|fgenesh1_pm.C_scaffold_7000632 2839 0.0
> Ahg328405 jgi|Araly1|328405|fgenesh1_pm.C_scaffold_7000632
Length=1791
Score = 2839 bits (1537), Expect = 0.0
Identities = 1697/1775 (96%), Gaps = 8/1775 (0%)
Strand=Plus/Plus
Query 10 ATGACGATAATGACGATGATAATGAAGATGGCTCCTTCCAAATCTGCACTGATACGCTTT 69
||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 1 ATGACGATAATGACGATGATAATGAAGATGGCTCCATCCAAATCCGCACTGATACGCTTC 60
Query 70 AATCTAGTCTTGTTGGGTTTCTCTTTTCTTCTCTACACTGCC-ATTTTCTTCCACCCTTC 128
|||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 61 AATCTAGTCTTGTTGGGTTTCTCTTTTCTTCTCTACACTGCCGTTTTTC-TCCACCCTTC 119
Query 129 TTCATCAGTCTATTTCAGCAGCGGAGCTTCCTTTGTTGGATGCTCTTTTCGTGATTGCAC 188
||||||||| || |||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 120 TTCATCAGTATACTTCAGCAGTGGAGCTTCCTTTGTTGGATGCTCCTTTCGTGATTGCAC 179
Query 189 TCCCAAGGTGGTGAGAGGAGTGAAGATGCAAGAACTCGTTGAAGAGAACGAAATAAACAA 248
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 ACCCAAGGTAGTGAGAGGAGTGAAGATGCAAGAACTCGTTGAAGAGAACGAAATAAACAA 239
Query 249 GAAAGATTTGCTAACCGCTAGTAACCAGACAAAGCTGGAGGCGCCAAGCTTCATGGAAGA 308
| |||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 240 CAGAGATTTGCTAACCGCTAGTAACCAAACCAAGCTGGAGGCGCCAAGCTTCATGGAAGA 299
Query 309 GATTTTAACAAGAGGGTTAGGAAAAACAAAGATAGGGATGGTGAACATGGAAGAATGTGA 368
||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct 300 GATTTTAACAAGAGGGTTAGGGAAAACAAAGATAGGGATGGTGAACATGGAAGAATATGA 359
Query 369 TCTTACTAATTGGAAACGTTATGGCGAAACGGTTCACATACATTTTGAGCGTGTCTCGAA 428
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||
Sbjct 360 TCTTACTAATTGGAAACGTTATGGAGAAACGGTGCACATACATTTTGAGCGTGTCTCTAA 419
Query 429 GCTCTTCAAATGGCAAGACTTGTTCCCCGAGTGGATAGATGAAGAGGAAGAAACCGAGGT 488
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 GCTGTTCAAATGGCAAGACTTGTTCCCCGAGTGGATAGATGAAGAGGAAGAAACCGAGGT 479
Query 489 TCCCACATGTCCTGAGATACCTATGCCCGATTTCGAAAGC-TTAGAGAAGTTGGATTTGG 547
||||||||||||||||||||| ||||| ||||| |||||| || ||||||||||||||||
Sbjct 480 TCCCACATGTCCTGAGATACCGATGCCAGATTTTGAAAGCGTT-GAGAAGTTGGATTTGG 538
Query 548 TAGTAGTGAAGTTGCCTTGTAATTACCCTGAAGAAGGGTGGAGAAGAGAGGTTTTGAGGT 607
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 539 TAGTAGTGAAGTTGCCTTGTAATTATCCTGAAGAAGGGTGGAGAAGAGAGGTTTTGAGGT 598
Query 608 TGCAAGTGAACCTAGTTGCGGCTAACTTGGCAGCCAAGAAAGGGAAGACGGATTGGAGAT 667
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 TGCAAGTGAACCTAGTTGCGGCTAACTTGGCAGCCAAGAAAGGGAAGACGGATTGGAGAT 658
Query 668 GGAAAAGCAAAGTGTTGTTTTGGAGCAAATGTCAACCGATGATTGAGATTTTCCGGTGTG 727
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 GGAAGAGCAAAGTGTTATTTTGGAGCAAATGTCAACCGATGATTGAGATTTTCCGGTGTG 718
Query 728 ATGATTTGGAGAAGAGAGAGGCAGATTGGTGGCTGTATCGCCCTGAGGTGGTTAGGTTAC 787
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 719 ATGATTTGGAGAAGAGAGAGACAGATTGGTGGTTGTATCGCCCTGAGGTGGTTAGGTTAC 778
Query 788 AACAG-AGACTCAGTTTGCCAGTCGGATCTTGCAATCTTGCTCTTCCTTTGTGGGCACCA 846
||||| || || ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 779 AACAGAAG-CTTAGTTTGCCAATCGGATCTTGCAATCTTGCTCTTCCTTTGTGGGCACCA 837
Query 847 CAAGGTGTAGACAAAGTGTATGACCTAACGAAGATAGAAGCAGAGACAAAACGACCAAAA 906
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 838 CAAGGTGTAGACAAAGTGTATGACCTATCGAAGATAGAAGCAGAGACAAAACGACCAAAA 897
Query 907 CGTGAAGCCTACGTAACTGTTCTTCACTCTTCCGAGTCTTATGTCTGTGGTGCCATAACT 966
||||||||||||||||| || || || |||||||||||||||||||||||||||||||||
Sbjct 898 CGTGAAGCCTACGTAACAGTCCTCCATTCTTCCGAGTCTTATGTCTGTGGTGCCATAACT 957
Query 967 TTGGCTCAAAGCCTCCTTCAGACAAACACCAAACGCGATCTTATCCTTCTCCACGATGAC 1026
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 TTGGCTCAAAGCCTTCTTCAGACAAACACCAAACGCGATCTTATCCTTCTCCACGATGAT 1017
Query 1027 TCCATCTCCATTACCAAACTTCGAGCTCTCGCCGCCGCAGGATGGAAGCTTCGTCGGATC 1086
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1018 TCCATCTCCATTACCAAACTTCGAGCTCTCGCGGCCGCAGGATGGAAGCTTCGTCGGATC 1077
Query 1087 ATTCGAATCAGAAACCCACTTGCGGAGAAGGACTCGTACAATGAATACAACTACAGCAAG 1146
|| ||||| ||||||||||| || ||||||||||| |||||||||||||| |||||||||
Sbjct 1078 ATCCGAATAAGAAACCCACTAGCCGAGAAGGACTCTTACAATGAATACAATTACAGCAAG 1137
Query 1147 TTTCGACTCTGGCAATTGACAGATTACGACAAAGTGATCTTCATTGATGCCGACATCATC 1206
|||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 1138 TTTCGACTTTGGCAATTGACAGATTATGACAAAGTGATCTTCATTGATGCTGACATCATC 1197
Query 1207 GTCTTACGTAACCTTGATCTTCTCTTCCATTTTCCTCAGATGTCGGCCACCGGAAATGAT 1266
||| |||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1198 GTCCTACGTAACCTAGATCTTCTCTTCCATTTTCCTCAGATGTCAGCCACCGGAAATGAT 1257
Query 1267 GTATGGATATATAATTCAGGCATCATGGTCATCGAGCCTTCTAATTGTACGTTTACTACA 1326
|| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1258 GTCTGGATATTTAATTCAGGCATCATGGTCATCGAGCCTTCTAATTGTACGTTTAGTACG 1317
Query 1327 ATCATGAGCCAGCGAAGCGAGATCGTTTCATACAACGGTGGAGATCAAGGGTACCTAAAC 1386
|||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1318 ATCATGAGCCAGAGAAGCGAGATCGTTTCATACAACGGCGGAGATCAAGGGTACCTAAAC 1377
Query 1387 GAGATATTTGTGTGGTGGCACCGATTGCCTCGACGAGTAAACTTTCTGAAGAACTTCTGG 1446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1378 GAGATATTTGTGTGGTGGCACCGATTGCCTCGACGAGTAAACTTTCTGAAGAACTTCTGG 1437
Query 1447 TCGAACACAACCAAAGAAAGAAACATCAAGAACAACCTCTTCGCCGCGGAGCC-GCCTCA 1505
|||||||||||||||||||||||||| ||||||||||||||||| |||||||| || |||
Sbjct 1438 TCGAACACAACCAAAGAAAGAAACATGAAGAACAACCTCTTCGCTGCGGAGCCTGC-TCA 1496
Query 1506 GGTCTACGCGGTCCACTACTTAGGTTGGAAACCATGGCTTTGCTATAGGGACTACGATTG 1565
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 1497 GGTCTACGCGGTCCACTACTTAGGTTGGAAACCATGGCTTTGCTATAGAGACTACGACTG 1556
Query 1566 CAACTACGACGTGGACGAGCAGTTGGTGTACGCTAGTGATGCGGCTCACGTTAGGTGGTG 1625
||||||||||||||| ||||| || ||||||||||| |||||||||||||||||||||||
Sbjct 1557 CAACTACGACGTGGATGAGCAATTAGTGTACGCTAGCGATGCGGCTCACGTTAGGTGGTG 1616
Query 1626 GAAAGTGCACGACTCCATGGACGATGCATTGCAAAAGTTTTGCAGGCTGACGAAAAAGAG 1685
|||||| ||||||||||||||| | || |||||||||||||||||||||||||| |||||
Sbjct 1617 GAAAGTTCACGACTCCATGGACAAAGCTTTGCAAAAGTTTTGCAGGCTGACGAAGAAGAG 1676
Query 1686 GAGAACGGAGATCAACTGGGAGAGGAGGAAAGCAAGGCTTAGAGGTTCCACTGATTATCA 1745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1677 GAGAACGGAGATCAACTGGGAGAGGAGGAAAGCAAGGCTTAGAGGTTCCACTGATTACCA 1736
Query 1746 TTGGAAGATCAATGTCACTGATCCAAGACGACGTC 1780
|||||||||||||||||||||||||||||||||||
Sbjct 1737 TTGGAAGATCAATGTCACTGATCCAAGACGACGTC 1771
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71000216680
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5