BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G33350.1
Length=918
Score E
Sequences producing significant alignments: (Bits) Value
Ahg944600 jgi|Araly1|944600|scaffold_700829.1 1365 0.0
> Ahg944600 jgi|Araly1|944600|scaffold_700829.1
Length=848
Score = 1365 bits (739), Expect = 0.0
Identities = 813/849 (96%), Gaps = 4/849 (0%)
Strand=Plus/Plus
Query 3 TCTCTCTGCAAATCC-AAAAATGGAGTCATCAGTGAAACCCAATCCTTTCCTCTCCTTCT 61
||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1 TCTCTCTGCAAATCCAAAAAATGGAGTCATCAGTAAAACCCAATCCTTTCCTCTCCTTCT 60
Query 62 CTTCTTTCATTCACCACCAGTGTACCCGCTTCAGCTCCGACCTCTCCGCCCGAATCGAAG 121
|||||||| |||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 61 CTTCTTTCCTTCACCACCACTGTACCCGCTTCAGCTCCGACCTCTCCGCCCGAATTGAAG 120
Query 122 ACACGAAACGATTCGCCGAAACCCTAGCTACTCGACGTTTCTCT-CTTCCTACTCCGCCG 180
|||| ||||||||||||||||||||||||||||||||||||||| ||| | |||| |||
Sbjct 121 ACACCAAACGATTCGCCGAAACCCTAGCTACTCGACGTTTCTCTCCTT-TTCCTCCTCCG 179
Query 181 CCTTTCGCCTCCGTCTCACAATCCAAGTCTGGAACCCCGACGACGACGTTGAGTCCATCT 240
|| ||||||||| |||| ||||||||||||||| | ||| | ||||||||||| |||||
Sbjct 180 CCGTTCGCCTCCATCTCGCAATCCAAGTCTGGAGCTCCGCCAACGACGTTGAGCCCATCG 239
Query 241 CTTGTCGCTAAAGCTCTCGCTGGGACGTCGGTGTTTACAGTCAGTAACACCAATAACGAA 300
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 240 CTTGTCGCTAAAGCTCTCGCTGGCACGTCGGTGTTTACAGTCAGTAACACCAATAACGAA 299
Query 301 TTCGTTCTTATCTCGGATCCTACCGGAGGCAAGTCTATCGGTTTGCTCTGTTTTCGACAA 360
|||||||||||||||||||||||||| | ||||||||| || ||||||||||||||||||
Sbjct 300 TTCGTTCTTATCTCGGATCCTACCGGTGACAAGTCTATTGGCTTGCTCTGTTTTCGACAA 359
Query 361 GAGGATGCTGAAGCTTTTCTTGCTCAGGCGCGACTTCGGAGAAGAGAATTGAAAACCAAT 420
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 GAGGATGCTGAAGCTTTCCTTGCTCAGGCGCGACTTCGGAGAAGAGAATTGAAAACCAAT 419
Query 421 GCGAAGGTTGTTCCCATTACTCTGGACCAGGTGTACTTGCTAAAAGTTGAAGGGATTTCC 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 GCGAAGGTTGTTCCCATTACTCTGGACCAGGTGTACTTGCTAAAAGTTGAAGGGATTTCT 479
Query 481 TTTCGCTTCTTGCCAGATCCAATCCAAATAAAGAATGCGTTAGAGCTCAAATCCTCAGGA 540
|||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 480 TTTCGCTTCTTGCCAGATCCAATCCAAATAAAGAATGCATTGGAGCTCAAATCCTCAGGT 539
Query 541 AATAAGAATGGGTTTGATGGAGTTCCGGTTTTTCAGTCTGAGCTTCTTGTTGTGAGGaaa 600
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 540 AATAAGAATGGGTTTGATGGAGTTCCAGTTTTCCAGTCTGAGCTTCTTGTTGTGAGGAAA 599
Query 601 aaaaaTAGACGTTACTGCCCTGTATATTTCAGTAAGGAAGATATAGAGAGGGAACTTTCT 660
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 600 AAAAATAGACGTTACTGCCCTGTATATTTCAGTAAGGAAGATATAGAGAAGGAACTTTCT 659
Query 661 AAATATACGAGAGCATCAAGAGGAGATCAACAAATTATGGTTGGGAGTCTGGAAGATGTG 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 AAATATACGAGAGCATCAAGAGGAGATCAACAAATTATGGTTGGGAGTCTGGAAGATGTG 719
Query 721 TTGAGGAAAATGGAGATGAGCGAGAAGAATTCAGGTTGGGAAGATGTAATATTCATTCCA 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 TTGAGGAAAATGGAGATGAGCGAGAAGAATTCAGGTTGGGAAGATGTAATATTCATTCCA 779
Query 781 CCGGGAAGAAGTTATGCACAACACATGCAGGATTTGATCAAAGAGTAAAACC-ATAATAG 839
|||||||||||||||||||||||||||||||| ||||||||||||||||| | |||||||
Sbjct 780 CCGGGAAGAAGTTATGCACAACACATGCAGGAGTTGATCAAAGAGTAAAAACGATAATAG 839
Query 840 ACACAATGT 848
|||||||||
Sbjct 840 ACACAATGT 848
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34043764881
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5