BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G33355.1

Length=661
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg888758 jgi|Araly1|888758|Al_scaffold_0007_744                     593    4e-169


> Ahg888758 jgi|Araly1|888758|Al_scaffold_0007_744
Length=360

 Score =  593 bits (321),  Expect = 4e-169
 Identities = 348/361 (96%), Gaps = 2/361 (1%)
 Strand=Plus/Plus

Query  50   ATGAGGAACATTACTACTACAACCCGAAAAATGTTACTACTTGTGATTACGATTTT-ATT  108
            |||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||| | |
Sbjct  1    ATGAGGAACATTACTACTACAACCCGAACAATGTTACTGCTTGTGATTACAATTTTGA-T  59

Query  109  GGGGATTGCGTATCATGGAGAAGCCATAGCATGTCCGCAGGTAAACATGTACTTAGCACA  168
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  60   GGGGATTGCGTATCATGGAGAAGCCATAGCATGTCCGCAGGTAAACATGTACTTAGCACA  119

Query  169  ATGTTTGCCTTATCTAAAAGCTGGAGGAAATCCGTCTCCAATGTGCTGCAACGGACTTAA  228
            ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct  120  ATGTTTGCCTTATCTAAAAGCTGGAGGAAATCCGTCTCCGATGTGTTGCAACGGACTTAA  179

Query  229  TAGTCTAAAAGCCGCAGCGCCTGAGAAAGCCGATAGACAAGTAGCTTGTAATTGCTTGAA  288
            ||||||||||||||| ||||||| |||| ||||||||||||||||||| ||||| |||||
Sbjct  180  TAGTCTAAAAGCCGCTGCGCCTGCGAAATCCGATAGACAAGTAGCTTGCAATTGTTTGAA  239

Query  289  GAGTGTAGCTAATACAATCCCTGGAATTAATGATGATTTTGCCAAACAACTCCCTGCTAA  348
            |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  240  GAGTGTAGCTAATACAATCCCTGGAATTAATGATGATTATGCCAAACAACTCCCTGCTAA  299

Query  349  ATGTGGTGTTAATATAGGAGTCCCTTTCTCTAAGACTGTGGACTGTAACAGCATAAACTG  408
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  300  ATGTGGTGTTAATATAGGAGTCCCTTTCTCTAAGACTGTGGACTGTAACAGCATAAACTG  359

Query  409  A  409
            |
Sbjct  360  A  360



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24246175212


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5