BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G33360.1
Length=1352
Score E
Sequences producing significant alignments: (Bits) Value
Ahg888757 jgi|Araly1|888757|Al_scaffold_0007_743 1604 0.0
> Ahg888757 jgi|Araly1|888757|Al_scaffold_0007_743
Length=1032
Score = 1604 bits (868), Expect = 0.0
Identities = 981/1036 (95%), Gaps = 5/1036 (0%)
Strand=Plus/Plus
Query 1 ATGGGCCCAAAGATGCCCAACACAGAAACAGAAAATATGAAAATATTAGTCACCGGCTCT 60
|||||||||||||||||||||| | ||| | ||||||||||||||||||||||||||||
Sbjct 1 ATGGGCCCAAAGATGCCCAACATA-AAA-A-CAAATATGAAAATATTAGTCACCGGCTCT 57
Query 61 ACTGGTTACTTAGGCGCACGACTCTGCCACGTTCTCCTCCGTCGTGGCCACTCCGTACGT 120
||||||||||||||||||||||| ||||||| |||||||||||| |||||||| |||||
Sbjct 58 ACTGGTTACTTAGGCGCACGACTGTGCCACGCTCTCCTCCGTCGCGGCCACTCTGTACGC 117
Query 121 GCATTGGTCCGCCGCACCAGCGATCTCTCTGACTTACCTCCAGAAGTTGAGCTCGCCTAT 180
|| ||||||||||||||||||||| |||||||||||||||||||||| |||||||| |||
Sbjct 118 GCCTTGGTCCGCCGCACCAGCGATATCTCTGACTTACCTCCAGAAGTCGAGCTCGCTTAT 177
Query 181 GGAGACGTAACGGATTACCGTTCTCTAACGGATGCTTGCTCCGGTTGCGATATCGTTTTC 240
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 GGAGACGTAACAGACTACCGTTCTCTAACGGATGCTTGCTCCGGTTGCGATATCGTTTTC 237
Query 241 CACGCCGCAGCTTTAGTTGAGCCTTGGCTTCCTGACCCATCTCGATTCATCTCAGTCAAC 300
|||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 238 CACGCCGCGGCTTTAGTTGAGCCTTGGCTTCCTGATCCATCTCGATTTGTCTCAGTCAAC 297
Query 301 GTTGGTGGACTGAAGAATGTCTTGGAAGCTGTAAAGGAGACGAAGACCGTGCAGAAGATT 360
||||||||||| ||||| || ||||||||||| ||||||||||| || ||||||||||||
Sbjct 298 GTTGGTGGACTCAAGAACGTTTTGGAAGCTGTTAAGGAGACGAAAACAGTGCAGAAGATT 357
Query 361 ATCTACACTTCTTCCTTCTTCGCTCTTGGATCTACCGATGGATCTGTTGCTAATGAGAAT 420
|||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||| ||
Sbjct 358 ATCTACACTTCTTCATTCTTCGCCCTTGGGTCTACCGATGGATCTGTTGCTAATGAGGAT 417
Query 421 CAAGTTCATAATGAGAGGTTCTTCTGCACTGAGTATGAGAGATCCAAGGCTGTTGCTGAT 480
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 418 CAAGTTCATAGTGAGAGGTTCTTCTGCACTGAGTATGAGAGATCCAAGGCTGCTGCTGAT 477
Query 481 AAGATGGCTTTGAATGCTGCTTCTGAAGGTGTGCCGATAATTTTGCTGTATCCTGGTGTT 540
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 478 AAGATTGCTTTGAATGCTGCATCTGAAGGTGTGCCGATAATTTTGCTGTATCCTGGTGTT 537
Query 541 ATTTTTGGTCCAGGCAAGCTCACTTCAGCCAATATGGTTGCTAGAA-TGTTGATCGAGCG 599
|||| ||||||||||||||||||| ||| |||||||||||||| || |||| ||||||||
Sbjct 538 ATTTATGGTCCAGGCAAGCTCACTACAGGCAATATGGTTGCTA-AATTGTTAATCGAGCG 596
Query 600 CTTTAACGGGAGGTTGCCTGGATATATTGGCTCTGGGACGGATAGATACTCCTTCAGCCA 659
|||||||||||| || |||||||||||||||||||||| ||||||||||||||||||||
Sbjct 597 CTTTAACGGGAGATTACCTGGATATATTGGCTCTGGGAATGATAGATACTCCTTCAGCCA 656
Query 660 TGTTGATGATGTTGTGGAGGGTCATGTTGCTGCAATGGAAAAAGGTAGGCTTGGTGAAAG 719
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 TGTTGATGATGTAGTGGAGGGTCATGTTGCTGCAATGGAAAAAGGTAGGCTTGGTGAAAG 716
Query 720 ATACTTACTCACTGGGGAAAATGCTTCTTTCAAGCTTGTCTTTGACATGGCTGCACTGAT 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 ATACTTACTCACTGGGGAAAATGCTTCTTTCAAGCTTGTCTTTGACATGGCTGCACTGAT 776
Query 780 TACTGGAACCAAAAAGCCAAACTTTAGCATTCCATTATGGGCCATCAACGCATACGGATG 839
||| ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 777 TACCGGAACCAAAAAACCAAACTTTAGCATTCCATTATGGGCAATCAACGCATACGGATG 836
Query 840 GTTATCTGTTTTAATCTCTCGGGTTACAGGAAAGCTTCCACTTATCAGTCCTCCGACAGT 899
|||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 837 GTTATCTGTTCTAATCTCTCGGGTTACAGGAAAGCTTCCACTTATCAGTCCCCCGACAGT 896
Query 900 GACAGTGCTGAGACATCAGTGGTCATACTCTTGTGATAAGGCTAAGCTGGAACTTGGTTA 959
|| ||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct 897 GAAAGTGCTGAGACATCAGTGGGCATACTCTTGTGACAAGGCTAAGCTGGAACTTGGTTA 956
Query 960 TAACCCTCGAAGCCTAAAGGAAGGATTGGAGGAGATGCTCCCTTGGTTGAAGAGTCTGGG 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 957 TAACCCTCGAAGCCTAAAGGAAGGATTGGAGGAGATGCTCCCTTGGTTGAAGAGTTTGGG 1016
Query 1020 CGTCATTCACTACTGA 1035
||||||||| ||||||
Sbjct 1017 CGTCATTCAATACTGA 1032
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50589110859
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5