BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G33380.1
Length=1427
Score E
Sequences producing significant alignments: (Bits) Value
Ahg944597 jgi|Araly1|944597|scaffold_700826.1 1657 0.0
> Ahg944597 jgi|Araly1|944597|scaffold_700826.1
Length=1029
Score = 1657 bits (897), Expect = 0.0
Identities = 985/1029 (96%), Gaps = 0/1029 (0%)
Strand=Plus/Plus
Query 153 TGGGATGACGGCGGAGGGAGATGGCGAGGGGAGGAGGAGAATGGACCGGAGGGATCGCCG 212
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TGGGATGACGGCGGTGGGAGATGGCGAGGGGAGGAGGAGAATGGACCGGAGGGATCGCCG 60
Query 213 GAACCGGAGTTCTCTCTTTCAAAAGAATCACTCTACTTGTTTGCTTTTTCAACATTCTCA 272
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 61 GAACCGGAGTTCTCTCTTTCAAAAGAATCACTCTACTCGTTTGCTTTTTCAACATTCTCA 120
Query 273 TTGCTCTCTTTGTTCTTCGCTTTCTCTATGCTTCTTCTCTCCACATCTATTCCAATAACG 332
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TTGCTCTCTTTGTTCTTCGCTTTCTCTATGCTTCTTCTCTCCACATCTATTCCAATAACG 180
Query 333 ATAATGTTGTTAAGTACACAGCTGATGAGATTAGGAAAATGGAGGAATCTATTCGGATTC 392
|||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 ATAACGTTGTTAGGTACACAGCTGATGAGATTAGGAAAATGGAGGAATCTATTCGGATTC 240
Query 393 GAAGATCGAAGGAACCTACTCTGATTCTTCAATTGGTGAAGAAGCTCAAGCATGAGGTTT 452
|||||||||| |||||||||||| || ||||||||||||||||||| ||||||||||||
Sbjct 241 GAAGATCGAAAGAACCTACTCTGCTTGTTCAATTGGTGAAGAAGCTGAAGCATGAGGTTG 300
Query 453 CCACTGCAGAATCTAGTACTGAACTATCTCCTAATGTTAAACACAAACTAGTTGATGAGA 512
||||||||||||||| ||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 301 CCACTGCAGAATCTAATACTGAACTCTCTCCTAATGTTAAACACAAACTTGTTGATGAGA 360
Query 513 TCCTCCAGCGTTTGAAAAGCTTTGAGGACAAATCTAATGTTACTCAGCTTAGAGAAGTTG 572
|||| |||||| ||||||||||||| || ||||||||||||||||||||||||||||| |
Sbjct 361 TCCTGCAGCGTCTGAAAAGCTTTGACGAGAAATCTAATGTTACTCAGCTTAGAGAAGTGG 420
Query 573 TAGAAACGTGGCGCAATGAGAAGCTGGAGGAAGCTAAAGAGCTAATTCAAGGGCAAAATG 632
||||||||||||||| || |||||||||||||||||||||||||||||||| |||||||
Sbjct 421 TAGAAACGTGGCGCAGGGAAAAGCTGGAGGAAGCTAAAGAGCTAATTCAAGGACAAAATG 480
Query 633 GAGTAAATTCCACCCTTATAGTGGAGGAAGCAGGGATGCTTGTAAGAGCTTTGGAGTTGG 692
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 GGGTCAATTCCACCCTTATAGTGGAGGAAGCAGGGATGCTTGTAAGAGCTTTGGAGTTGG 540
Query 693 AGTGGGATGTGCTGTCTGAAGAAATCGGTTTCTGGTTACCTGCTGAGGTTACCAATGTAG 752
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| ||
Sbjct 541 AGTGGGATGTGCTGTCTGAAGAGATCGGGTTCTGGTTACCTGCTGAGGTTACCAATGAAG 600
Query 753 AACATGATGATAAACCTGAAGGAGAGGAAGAGCCTGAGGAAATATTGGCAGGCAGACCAG 812
|||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 601 AACACGATGATAAACCTGAAGGAGAGGAAGAGCCTGAGGAGATATTAGCAGGCAGACCAG 660
Query 813 TGCCAGCTGTATGTAATGCAGAGCTTCACACAGATTATGGTGGTGCTGCAGTGAGATGGG 872
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 TGCCAGCAGTATGCAATGCAGAGCTTCACACAGATTATGGTGGTGCTGCAGTGAGATGGG 720
Query 873 GGCTTACACATCATAAAGAGAGTGCAGCTGATTGTTGCCAGGCTTGCTTAGACCAGGCAA 932
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 GACTTACACATCATAAAGAGAGTGCAGCTGATTGTTGCCAGGCTTGCTTAGACCAGGCAA 780
Query 933 AGCGTGCGAAACCTGGAGAAACGAGATGCAATATTTGGGTTTATTGCCCATCTGAGTTTG 992
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 781 AGCGTGCGAAACCTGGAGAAACAAGATGCAACATTTGGGTTTATTGCCCATCTGAGTTTG 840
Query 993 GTTGTTTCTCTCCAGATATTTATGAGCATAAACATCAGGAGTGTTGGCTTAAATACGCAG 1052
|||||||||||||||||||||| ||||||||||||||||| |||||||| ||||| ||||
Sbjct 841 GTTGTTTCTCTCCAGATATTTACGAGCATAAACATCAGGAATGTTGGCTAAAATATGCAG 900
Query 1053 AGAAGCCAAAACAGAATTTCAAAGACAGATATTCTGAGACATACAGAAACAACCACCCAA 1112
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 901 AGAAGCCAAAACAGAATTTTAAAGACAGATACTCTGAGACATACAGAAACAACCACCCAA 960
Query 1113 AAGCGCCATCTATCGTTCCATGGGTTTCAGGTGTTGTAACGGCTTGAGCAAAACCCATGT 1172
||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 961 AAGCGCCTTCTATCGTTCCATGGGTTTCAGGTGTTATAACGGCTTGAGCAAAACCCGTGT 1020
Query 1173 GGACAGATT 1181
||||||||
Sbjct 1021 AGACAGATT 1029
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53364433245
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5