BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G33390.1
Length=2531
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491351 jgi|Araly1|491351|fgenesh2_kg.7__784__AT4G33390.1 3205 0.0
Ahg481517 jgi|Araly1|481517|fgenesh2_kg.4__577__AT2G26570.1 1151 0.0
> Ahg491351 jgi|Araly1|491351|fgenesh2_kg.7__784__AT4G33390.1
Length=2495
Score = 3205 bits (1735), Expect = 0.0
Identities = 2058/2209 (93%), Gaps = 42/2209 (2%)
Strand=Plus/Plus
Query 359 AGAAAATGGGAAAATTTATATGGATGACACTTTTTTACCTT---C---A--AAA-TCTCA 409
||||||||||||||||||||||||||||||||||||||||| | | ||| |||||
Sbjct 293 AGAAAATGGGAAAATTTATATGGATGACACTTTTTTACCTTCCACTTTATCAAACTCTCA 352
Query 410 AGTAAAAGAAACACAAGATTCTCCTACTACTCCTAGTTTTGTGTCTCCCTCTGCTGAGAT 469
|||| ||||||||||||||||| |||||||||||| |||||| |||||||||||||||||
Sbjct 353 AGTAGAAGAAACACAAGATTCTTCTACTACTCCTACTTTTGTTTCTCCCTCTGCTGAGAT 412
Query 470 TGTTCTGCCTCGCGTAAACACCAAGTATGAAGCAGAGGGCACAACAAGAAATGCAGTGTC 529
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 413 TGTTCTGCCTCGCGTAAACACCAAGTATGAAGCAGAGGGTACAACAAGAAATGCAGTGTC 472
Query 530 TCCAAGACCTCTGTATTCCCCTAGAAGCATTGGATCTCCAAGAGCACTAC-TGTCTCCAA 588
||||||| |||||| ||||| |||||||||||||||||||||||| | | |||||||||
Sbjct 473 TCCAAGATCTCTGTCTTCCCAAAGAAGCATTGGATCTCCAAGAGCA-TTCGTGTCTCCAA 531
Query 589 GGTTTGCAGGATCATCATCACCATTGAGCAATGGAACACCCATAAGTATGGATTCTTTCA 648
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 532 GGTTTGCAGGATCATCATCACCATTGAGCAATGGAACACCCAGAAGTATGGATTCTTTCA 591
Query 649 GAGACTCAATTGATACAGCATCACCTTTTGAATCTGTCAAAGAAGCTGTTTCCAAATTTG 708
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 592 GAGACTCTATTGATACAGCATCACCTTTTGAATCTGTCAAAGAAGCTGTCTCCAAATTTG 651
Query 709 GGGGAATAACTGATTGGAAGGCACATAGAATGAAAGTATTAGAGCGACGCAATTTTGTGG 768
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 652 GGGGAATTACTGATTGGAAAGCACATAGAATGAAAGTATTAGAGCGACGCAATTTTGTGG 711
Query 769 AACAAGAGCTCGACAAGATCCAGGAGGAGATTCCTGAGTACAAAAAGAAATCAGAGATGG 828
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 712 AACAAGAGCTCGACAAGATCCAGGAGGAGATTCCTGAGTACAAAAAGAAAGCAGAGATGG 771
Query 829 TCGAGATGTCAAAAATGCTAGCGGTTGAGGAGCTAGAGAGTACAAAGAGGCTCATAGAAG 888
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 772 TCGAGATGTCAAAAATGCTAGCGGTTGAGGAGCTAGAGAGTACAAAGAGACTCATAGAAG 831
Query 889 AATTGAAGCTTAATCTTGAAAAAGCTGAAACAGAAGAACAACAGGCAAAGCAAGACTCTG 948
| ||||||||||||||||| |||||||||||||||||| ||||||||||||| |||||||
Sbjct 832 AGTTGAAGCTTAATCTTGACAAAGCTGAAACAGAAGAAAAACAGGCAAAGCAGGACTCTG 891
Query 949 AGCTTGCCAAGCTGAGAGTTCAAGAGATGGAACAAGGAATTGCTGATGAAGCTAGTGTTG 1008
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 892 AGCTGGCCAAGCTGAGAGTTCAAGAGATGGAACAAGGAATTGCTGATGAAGCGAGTGTTG 951
Query 1009 CATCTAAAGCACAGCTTGAAGTCGCTCAAGCAAGACATACATCTGCAATTTCAGAATTGG 1068
|| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |
Sbjct 952 CAGCTAAAGCACAGCTTGAAGTGGCTCAAGCAAGACATACATCTGCAATTTCAGAACTAG 1011
Query 1069 AATCTGTCAAGGAAGAGCTACAAACTCTGCAAAACGAGTATGACGCCTTGGTAAAAGAGA 1128
|||||||||||||||||||||||| ||||||||| |||||||| | || ||||||||||
Sbjct 1012 AATCTGTCAAGGAAGAGCTACAAAATCTGCAAAAGGAGTATGATGATTTAGTAAAAGAGA 1071
Query 1129 AAGATTTGGCTGTGAAGGAAGCTGAAGAAGCGGTTATT-GCTTCAAAAGAAGTTGAGAGG 1187
|||| ||||| ||||||||||| |||||||| ||| || ||||| |||||||||||||||
Sbjct 1072 AAGAGTTGGCAGTGAAGGAAGCAGAAGAAGCTGTT-TTGGCTTCTAAAGAAGTTGAGAGG 1130
Query 1188 AAAGTTGAAGAACTCACTATAGAGTTGATAGCTACAAAGGAGTCATTGGAATGTGCACAT 1247
||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |||
Sbjct 1131 AAAGTTGAAGAACTCACTATAGAGTTGATAGCTACAAAGGAGTCACTAGAATGTGCGCAT 1190
Query 1248 TCTTCTCATTTGGAGGCGGAAGAACATAGGATTGGAGCTGCCATGTTGCGTGATCAGGAG 1307
|||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 1191 TCTTCTCATTTGGAGGCGGAAGAACATAAGATTGGAGCAGCCATGTTGCGTGATCAGGAA 1250
Query 1308 ACTCACCGGTGGGAGAAGGAACTAAAGCAAGCAGAGGAAGAACTACAAAGACTTAAGCAA 1367
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 1251 ACTCACCGGTGGGAGAAGGAACTAAAGCAAGCAGAAGAAGAACTCCAAAGACTTAAGCAA 1310
Query 1368 CATTTAGTTTCTACAAAGGAATTACAAGTGAAACTTGAATTTGCATCAGCCTTGCTGCTT 1427
||| ||||||||||||| ||| |||||||||||||||||||||| ||||| |||||||||
Sbjct 1311 CATATAGTTTCTACAAATGAACTACAAGTGAAACTTGAATTTGCTTCAGCATTGCTGCTT 1370
Query 1428 GATTTGAAGAAAGAATTGGCAGATCATAAAGAATCATCCAAGGTAAAGGAGGAAACGAGT 1487
||||| ||||||||| |||| ||||||| |||||||||||| ||||| |||||||| ||
Sbjct 1371 GATTTAAAGAAAGAACTGGCTGATCATATGGAATCATCCAAGTTAAAGCAGGAAACGGGT 1430
Query 1488 GAGACAGTAGTAACAAACATTGAGATTTCATTACAGGAAAAAACTACAGATATACAAAAA 1547
||| | ||||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct 1431 GAGTC---AGTAACAAACACTGAGATTTCATTACAGGAAAAGACTACAGATATACAAAAA 1487
Query 1548 GCTGTTGCTTCTGCAAAGAAAGAACTCGAAGAAGTGAACGCGAATGTGGAGAAAGCAACT 1607
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 1488 GCTGTTGCTTCTGCAAAGAAAGAACTCGAAGAAGTGAATGCAAATGTGGAGAAAGCAACT 1547
Query 1608 TCTGAAGTGAATTGCTTAAAGGTTGCATCCTCTTCCTTGAGATTGGAAATTGATAAGGAG 1667
||||||||||||| ||||||||| |||| |||||||||||||||||||||||| || |||
Sbjct 1548 TCTGAAGTGAATTCCTTAAAGGTAGCATTCTCTTCCTTGAGATTGGAAATTGAGAAAGAG 1607
Query 1668 AAATCAGCACTTGACTCATTAAAACAAAGAGAAGGGATGGCATCGGTAACGGTTGCTTCT 1727
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1608 AAATCAGCACTTGACTCACTAAAACAAAGAGAAGGGATGGCATCGGTAACGGTTGCTTCT 1667
Query 1728 CTAGAAGCTGAGATCGACATAACGAGGTGCGAAATAGCTTTGGTTAAGTCCAAGGAAAAA 1787
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1668 TTAGAAGCTGAGATCGACATAACGAGGTGCGAAATAGCTTTGGTTAAGTCCAAGGAAAAA 1727
Query 1788 GAAACTAGAGAGGAAATGGTGGAGCTACCAAAGCAACTGCAACAAGCAAGTCAAGAGGCA 1847
||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1728 GAAGCCAGAGAGGAAATGGTGGAGCTACCAAAGCAACTGCAACAAGCAAGTCAAGAGGCT 1787
Query 1848 GATGAAGCGAAATCATTCGCTGAACTTGCTCGTGAAGAGCTGCGGAAGTCTCAAGAAGAA 1907
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1788 GATGAAGCAAAATCATTCGCTGAACTTGCTCGTGAAGAGCTGCGAAAGTCTCAAGAAGAA 1847
Query 1908 GCAGAGCAAGCAAAGGCTGGAGCAAGTACAATGGAGAGCAGATTATTTGCAGCTCAGAAA 1967
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1848 GCAGAGCAAGCAAAGGCTGGAGCAAGTACAATGGAGAGCAGATTATTTGCAGCTCAGAAA 1907
Query 1968 GAAATTGAGGCTATTAAAGCTTCAGAGAGGCTGGCATTAGCTGCCATCAAGGCCTTGCAA 2027
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 1908 GAAATTGAGGCTATTAAAGCTTCAGAGAGGCTTGCATTAGCTGCCATAAAGGCCTTGCAA 1967
Query 2028 GAGAGTGAATCTAGTTCAAAGGAAAACGCTGTTGATTCTCCGAGGACTGTAACACTGACA 2087
||||| ||||||||||||||||| ||||||||||||||||| || || ||||||||||||
Sbjct 1968 GAGAGCGAATCTAGTTCAAAGGACAACGCTGTTGATTCTCCAAGAACCGTAACACTGACA 2027
Query 2088 ATAGAAGAGTACTATGAGCTTAGCAAGCGTGCTCACGAGGCTGAAGAAGCCGCCAATGCA 2147
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2028 ATAGAGGAGTACTATGAGCTTAGCAAACGTGCTCACGAGGCTGAAGAAGCCGCCAATGCA 2087
Query 2148 AGAGTTGCAGCAGCGGTTTCTGAGGTTGGAGAAGCCaaagaaacagaaaagagaagcttg 2207
|||||||||||||||||||||||| | | ||||||||||||||||||||| |||| ||||
Sbjct 2088 AGAGTTGCAGCAGCGGTTTCTGAGATCGAAGAAGCCAAAGAAACAGAAAACAGAACCTTG 2147
Query 2208 gagaagttggaagaagtaaacaaagagatggttgagagaaagGCAACACTTGCAGGAGCA 2267
|||||||| || ||||| ||||||||||||||| |||||||| ||||||||||||||||
Sbjct 2148 GAGAAGTTTGAGGAAGTTAACAAAGAGATGGTTTCGAGAAAGGAAACACTTGCAGGAGCA 2207
Query 2268 ATGGAGAAGGCTGAGAAGGCTAAAGAAGGGAAGTTGGGTGTAGAACAAGAGCTGAGAAAA 2327
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 2208 ATGGAGAAGGCTGAGAAGGCTAAAGAAGGGAAGTTGGGTGTAGAGCAAGAACTGAGAAAA 2267
Query 2328 TGGAGGGAAGTAAGTGaaaaaaaGAGAAAGAATGGT-AG--TA--GC------CAT-G-- 2373
|||||||||| ||||||||||||||||||||||||| | || | ||| |
Sbjct 2268 TGGAGGGAAGAAAGTGAAAAAAAGAGAAAGAATGGTGATAATAATGGAGTGAACATAGAA 2327
Query 2374 --GA---A---AAA--GCATTCAAGGGTCGAAGGAGAAAGAAGCTGAGACTAGTGTA-TC 2422
|| | ||| ||||||| ||||| |||||||||||||||||||||| || | ||
Sbjct 2328 AAGAGTCATGGAAAAAGCATTCAGGGGTCCAAGGAGAAAGAAGCTGAGACTAATG-AGTC 2386
Query 2423 TAACGAAACAGAAACAAACCCAATCCCACAGGTAAATCCTGTAAAGAAAAAGAAGAAACT 2482
|||| |||||||||||| ||||| ||||||| |||||||||||||||||||||||||||
Sbjct 2387 AAACGTAACAGAAACAAATCCAATTCCACAGGCAAATCCTGTAAAGAAAAAGAAGAAACT 2446
Query 2483 TTTCCCAAGATTTTTTATGTTCTTGATGAAGAAAAAGTCACATAAGTGA 2531
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2447 TTTCCCAAGATTTTTTATGTTCTTGATGAAGAAAAAGTCACATAAGTGA 2495
Score = 274 bits (148), Expect = 2e-72
Identities = 279/335 (83%), Gaps = 37/335 (11%)
Strand=Plus/Plus
Query 5 AGACTTTCCAATTGTGTACCTCTCTTTTCTTGTCTTCTTAATCAGAAAATCAATAattct 64
||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 1 AGACTTTCCAATTGTGTACCTCTCTTTTCATGTCTTCTTAATCGGAAAATCAATAATTCT 60
Query 65 cttctactttcttcatttttccctttctcttgtaagtctctcttttcattgattctttct 124
|||||||||||||||||||||| |||||||||||||||||| ||| |||||||||| |||
Sbjct 61 CTTCTACTTTCTTCATTTTTCC-TTTCTCTTGTAAGTCTCT-TTT-CATTGATTCTATCT 117
Query 125 ATTGGTGGCGAGCTTCGTTCAATCGTTTTAGCATTTCTCTTGTAAGTTTCGGCCTTGCTT 184
||||||| || | | ||| ||||||| | || ||| | ||||||
Sbjct 118 TTTGGTGGTGA--T-C-TTC----GTTTTAG-AGTT-TCT---------C----TTGCTT 154
Query 185 TCCTCCGATGGAGGATTTGAAAACAACAGACGCACTATCTCTTCCAGTTG-TT--AGTG- 240
|||||| ||||||||||||||||||||||| ||| |||||| ||||| | || ||||
Sbjct 155 TCCTCCAATGGAGGATTTGAAAACAACAGATGCAGTATCTCCTCCAGAAGATTCTAGTGT 214
Query 241 -AT-A--A-TGGTGGAATAATAGAGCCTGAGTTGCAGCTA-CCTCAAGCAATACCAACAG 294
|| | | |||| | |||||||||||||||||||| | | ||||||||||||||||||
Sbjct 215 TATTAGTAATGGTCGCATAATAGAGCCTGAGTTGCATC-AGCCTCAAGCAATACCAACAA 273
Query 295 AACTTGAGAATAATGAAGAAGAAAATGGGACAATT 329
|||| ||||||||||| ||||||||||||| ||||
Sbjct 274 AACTAGAGAATAATGACGAAGAAAATGGGAAAATT 308
> Ahg481517 jgi|Araly1|481517|fgenesh2_kg.4__577__AT2G26570.1
Length=2494
Score = 1151 bits (623), Expect = 0.0
Identities = 1427/1803 (79%), Gaps = 103/1803 (6%)
Strand=Plus/Plus
Query 605 ATCACCATTGAGCAATGGAACACCCATAAGTATGGATTC-TTTCAGAGACTCAATTGATA 663
|||||| |||||| |||||||| | || | |||| || || ||| | ||| || |
Sbjct 425 ATCACCGGTGAGCACCGGAACACCGAAAAATGTGGACTCACATC-GAGGTTTAATCGACA 483
Query 664 CAGCATCACCTTTTGAATCTGTCAAAGAAGCTGTTTCCAAATTTGGGGGAATAACTGATT 723
| ||| | || ||||||||||| ||||||||||| || |||||||| ||||| ||||| |
Sbjct 484 CTGCAGCGCCATTTGAATCTGTTAAAGAAGCTGTCTCAAAATTTGGAGGAATTACTGACT 543
Query 724 GGAAGGCACATAGAATGAAAGTATTAGAGCGACGCAATTTTGTGGAACAAGAGCTCGACA 783
|||| | || ||||| ||| ||||| ||||||| || | ||| ||||||| | |
Sbjct 544 GGAAATCTCACCGAATGCAAGCGGTAGAGAGACGCAAGCTTATAGAAGAAGAGCTTAAAA 603
Query 784 AGATCCAGGAGGAGATTCCTGAGTACAAAAAGA-AATCAGAGA-TGGTCGA-GATGTCAA 840
||||||| |||||||||||||||||| |||| | | || || | | | || | || |||
Sbjct 604 AGATCCATGAGGAGATTCCTGAGTAC-AAAACACATTCGGAAACAGCT-GAGGCTG-CAA 660
Query 841 AAATGCTAGCGGTTGAGGAGCTAGAGAGTACAAAGAGGCTCATAGAAGAATTGAAGCTTA 900
|| ||| || | || |||||||||| || |||||||| ||||||||| ||||||||||||
Sbjct 661 AACTGCAAGTGCTTAAGGAGCTAGAAAGCACAAAGAGACTCATAGAACAATTGAAGCTTA 720
Query 901 ATCTT-GAAAAAGCTG-AAACAGAAGAACAACAGGCAAAGCAAGACTCTGAGCTTGCCAA 958
|| || || || || | ||||||||||||||||||| ||||| || || |||||||| ||
Sbjct 721 AT-TTGGAGAAGGC-GCAAACAGAAGAACAACAGGCGAAGCAGGATTCGGAGCTTGCTAA 778
Query 959 GCTGAGAGTTCAAGAGATGGAACAAGGAATTGCTGATGAAGCT-AGTGTTGCATCTAAAG 1017
||||| ||| |||||||||| |||||||| ||||| || | | ||||||||| ||||||
Sbjct 779 ACTGAGGGTTGAAGAGATGGAGCAAGGAATAGCTGAAGATG-TCAGTGTTGCAGCTAAAG 837
Query 1018 CACAGCTTGAAGTCGCTCAA-GCAAGACATACATCTGCAATTTCAGAATTG-GAATCTGT 1075
| || ||||| || || ||| || || |||||| | |||||| |||| ||| | |||||
Sbjct 838 CGCAACTTGAGGTGGC-CAAGGCGAGGCATACAACAGCAATTACAGAGTTGTG-TTCTGT 895
Query 1076 CAAGGAAGAGCTACAAACTCTGCAAAACGAGTATGACGC-CTTGGTAAAAGAGAAAGATT 1134
|||||| |||||| |||||||||| || || ||||| || | |||| |||| ||||||
Sbjct 896 CAAGGAGGAGCTAGAAACTCTGCATAAGGAATATGATGCGC-TGGTGCAAGAAAAAGATG 954
Query 1135 TGGCTGTGAAGGAAGCT-GAAGAAGCGGTTATT-GCTTCAAAAGAAGTTGAGAGGAAAGT 1192
||| || ||| ||| | || ||||| | || || |||||||||||||||| || |||
Sbjct 955 CGGCCGTAAAGAAAG-TCGAGGAAGC-AATGTTGGCATCAAAAGAAGTTGAGAAGACAGT 1012
Query 1193 TGAAGAACTCACTATAGAGTTGATAGCTACAAAGGAGTCATTGGAATGTGCACATTCTTC 1252
||||||||| || |||||| |||||||||||||||||||| |||||| |||||| ||||
Sbjct 1013 TGAAGAACTTACCATAGAGCTGATAGCTACAAAGGAGTCACTGGAATCAGCACATGCTTC 1072
Query 1253 TCATTTGGAGGCGGAAGAACATAGGATTGGAGCTGCCATGTTG-C-GTGATCAGGAGACT 1310
|||||| |||||||||||||| ||||||||||| |||||| | | | || ||||| |||
Sbjct 1073 TCATTTAGAGGCGGAAGAACAAAGGATTGGAGCAGCCATG--GCCAGAGACCAGGATACT 1130
Query 1311 CACCGGTGGGAGAAGGAACTAAAGCAAGCAGAGGAAGAACTACAAAGACTTAAGCAACAT 1370
||||| |||||||||||||| |||||||| || || ||||| |||| ||| || |||||
Sbjct 1131 CACCGCTGGGAGAAGGAACTGAAGCAAGCGGAAGAGGAACTCCAAAAACTGAACCAACAG 1190
Query 1371 TTAGTTTCTAC-AAAGGAAT-TACAAGT-GAAACTTGA-ATTTGCATCAGC-CTTGCTGC 1425
|| |||| | ||| | || || || | ||| ||||| | ||| ||||| | |||| |
Sbjct 1191 ATACATTCTTCGAAA-G-ATCTA-AAATCGAAGCTTGACA-CTGCCTCAGCAC-TGCTTC 1245
Query 1426 TTGATTTGAAGAAAGAATTGGCAGATCATAAAGAATCATCCAAGGTAAAGGAGGAAACGA 1485
||||||||||| |||||||| || | || | | | ||||||| |||| ||||| ||
Sbjct 1246 TTGATTTGAAGGCAGAATTGGTAGCTTAT-ATGGA--ATCCAAGCTAAAACAGGAAGCGT 1302
Query 1486 GTGAGACAGTAGTA-ACAAACATTGAGATTTCATTACAGGAAAA-A--A--C-TACAGAT 1538
|||| || | | ||||||| ||| ||| ||| ||||| | | | | |||||
Sbjct 1303 GTGACTCA--A--ACACAAACACTGATCCTTC--GACA-GAAAACATGAGCCATCCAGAT 1355
Query 1539 ATACAAAAAGCTGTTGCTTCTGCAAAGAAAGAACTCGAAGAAGTGAACG-CGAATGTGGA 1597
|||| ||||||||| ||||||||||| ||||| ||||| || || | | ||| | ||
Sbjct 1356 TTACATGCAGCTGTTGCCTCTGCAAAGAAGGAACTTGAAGAGGTCAATGTC-AATATCGA 1414
Query 1598 GAAAGCAACTTCTGAAGTGAATTGC-TT-AAAGGTTGCATCCTCTTCCTTG-AGATTGGA 1654
||||||| || |||||||||||| | || ||| | || |||||||||||| | | ||||
Sbjct 1415 GAAAGCATCTGCTGAAGTGAATT-CTTTGAAA-CTAGCCTCCTCTTCCTTGCA-ACTGGA 1471
Query 1655 AATTGATAAGGAGAAA-TC-AGCACTTGACTCATTAAAACAAAGAGAAGGGATGGCATCG 1712
| | || || || ||| || | | |||| |||| | |||||||||||||| ||||| ||
Sbjct 1472 ACTCGAGAAAGA-AAAGTCTA-CTCTTGCCTCAATCAAACAAAGAGAAGGAATGGCCTCT 1529
Query 1713 GTAACGGTTGCTTCTCTAGAAGCTGAGATCGACATAACGAGGTGC-GAAATAGCTTTGGT 1771
|| | ||||||||| |||| ||||| || |||| |||||||| | ||||||| || |||
Sbjct 1530 ATAGCAGTTGCTTCTATAGAGGCTGAAATTGACAGAACGAGGT-CAGAAATAGATTCGGT 1588
Query 1772 TAAGTCCAAGGAAAAAGAAACTAGAGAGGAAATGGTGGAGCTACCAAAGCAACTGCAACA 1831
| |||| ||||| ||||| | ||||| |||||||||||||||| |||||||| || ||
Sbjct 1589 TCAGTCAAAGGAGAAAGACGCGAGAGATAAAATGGTGGAGCTACCCAAGCAACTTCAGCA 1648
Query 1832 AGCAAGTC--AAGAGGCAGATGAAGCGAAA-TCA-TTCGCTGAACTTGCTCGTGAAGAGC 1887
||| || | ||||||| |||||||| ||| ||| || |||||| |||||||||||||||
Sbjct 1649 AGC-AG-CAGAAGAGGCTGATGAAGC-AAAGTCACTT-GCTGAAGTTGCTCGTGAAGAGC 1704
Query 1888 TGCGGAAGTCTCAAGAAGAAGCAGAGCAAGCAAAGGCTGGAGCAAGTACAATGGAGAGCA 1947
| || ||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1705 TTCGAAAGGCGAAAGAAGAAGCAGAGCAAGCAAAGGCTGGAGCAAGTACAATGGAGAGCA 1764
Query 1948 GATTATTTGCAGCTCAGAAAGAAATTGAGGCTAT-TAAAGCTTCAGAGAGGCTGGCATTA 2006
| ||||||| || ||||| ||||| || || | ||||||||||||||||||||| |||
Sbjct 1765 GGCTATTTGCTGCGCAGAAGGAAATCGAAGC-AGCTAAAGCTTCAGAGAGGCTGGCCTTA 1823
Query 2007 GCTGCCATCAAGGCCTTGCAAGAGAGTGAATCTAG-TTCAAAGGAAA--ACGCTGTTGAT 2063
|||||||||| ||| ||| | ||||||||||| | || |||| || || | | ||
Sbjct 1824 GCTGCCATCATGGCTTTGGAGGAGAGTGAATCAACATTGAAAGCTAATGACACCG---AT 1880
Query 2064 TCTCC--GAGGACTGTAACACTGACAATAGAAGAGTACTATGAGCTTAGCAAGCGTGCTC 2121
||||| || | | || ||||| || ||||||||||||||||||| ||||| ||||| |
Sbjct 1881 TCTCCACGAAG-C-GTTACACTTTCACTAGAAGAGTACTATGAGCTCAGCAAACGTGCCC 1938
Query 2122 ACGAGGCTGAAGAAGCCGCC-AATGCAAGAGTTGCAGCAGCGGTTTCTGAGGTTGGA-GA 2179
||||||| |||||| | | | || || ||||| ||||| |||||||| ||| | || ||
Sbjct 1939 ACGAGGCAGAAGAA-CTGGCGAACGCCAGAGTAGCAGCGGCGGTTTCA-AGGATCGACGA 1996
Query 2180 AGCCaaagaaacagaaaagagaagcttggagaagttggaagaagtaaacaaagagatggt 2239
||| ||||||||||||| |||||||||||||||||||||||||||||||| ||| ||||
Sbjct 1997 AGCTAAAGAAACAGAAATGAGAAGCTTGGAGAAGTTGGAAGAAGTAAACAGAGACATGGA 2056
Query 2240 tgagagaaagGCAA--CACTTGCAGGA-GCAA-TGGAGAAGGCTGAGAAGGCTAAAGAAG 2295
|| ||||||| || || || | || |||| || | |||||||||||||| |||||||
Sbjct 2057 TGCGAGAAAG--AAGGCA-TTAAAAGAAGCAACTGAA-AAGGCTGAGAAGGCGAAAGAAG 2112
Query 2296 GGAAGTTGGGTGTAGAACAAGAGCTGAGAAAATGGAGGGAAG-TAAGTGaaaaaaaGAGA 2354
|||||||||| || ||||| |||||||| |||||||||| || | | |||| ||||||||
Sbjct 2113 GGAAGTTGGGGGTGGAACAGGAGCTGAGGAAATGGAGGGCAGATCA-TGAACAAAAGAGA 2171
Query 2355 AAG 2357
|||
Sbjct 2172 AAG 2174
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 95416063725
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5