BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G33400.1
Length=2321
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491350 jgi|Araly1|491350|fgenesh2_kg.7__783__AT4G33400.1 3465 0.0
Ahg479439 jgi|Araly1|479439|fgenesh2_kg.3__2140__AT3G19240.1 250 4e-65
> Ahg491350 jgi|Araly1|491350|fgenesh2_kg.7__783__AT4G33400.1
Length=2227
Score = 3465 bits (1876), Expect = 0.0
Identities = 2130/2249 (95%), Gaps = 31/2249 (1%)
Strand=Plus/Plus
Query 15 ACGCTCTTCTCTCTT-CTTCTTCAACTTCCCACCTTCGTTTGAATAATCTCATTGCCG-- 71
|||||||||| |||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1 ACGCTCTTCT-TCTTCCTTCTTCAACTTCCCACCTTCATTTGAATAATCTCATTGCCGTT 59
Query 72 -T-T---ATTCTCTCTAGCTCTTCCCATTTCCAGGATTCTTCGATATGGGAGCATCTCAC 126
| | |||||||||||||||| |||||||||||||||||||||||||||||| | |||
Sbjct 60 ATCTCAGATTCTCTCTAGCTCTTTCCATTTCCAGGATTCTTCGATATGGGAGCAACCCAC 119
Query 127 AGTCATGAAGATCTAGAGATCTGTTCCTCCGatgaagatgaatatgaagaatatgaagaa 186
|||||||||||||| ||||||||||| || || || ||||||||||||||||||||||||
Sbjct 120 AGTCATGAAGATCTGGAGATCTGTTCTTCAGACGAGGATGAATATGAAGAATATGAAGAA 179
Query 187 ggaagagagggagaggaagaggaagagaCGTTTCAGGACTCGCGGGATGATACGTTAGGT 246
|||||||| ||| | ||||||||||||||||| ||||||||| |||| ||||||||||
Sbjct 180 GGAAGAGACGGACAAGAAGAGGAAGAGACGTTCCAGGACTCGAGGGACCATACGTTAGGC 239
Query 247 ATATCTTCCTCCGGTGGTCGTCGTCTCCGGCCTAAATCTCCTTCATCATCACTCGACGAC 306
|| ||||||||| | ||||||||||||||||||| |||||||||||||||| ||||||
Sbjct 240 ATTTCTTCCTCC---GCTCGTCGTCTCCGGCCTAAAGCTCCTTCATCATCACTTGACGAC 296
Query 307 GTTGAGGCAAAACTCCAAGCCCTGAAGCTGAAATACCCATTGACGCAATCAGCCCCGTCT 366
|||||||||||||||||||| |||||||||||||||| || |||| | ||||||||||
Sbjct 297 GTTGAGGCAAAACTCCAAGCTCTGAAGCTGAAATACCAATCGACG-GA--AGCCCCGTCT 353
Query 367 ACTCAGAACTCAGCTCGGCTTTTCCGCTACATCAATGGCAACACTCCCAAAGCCAAATGG 426
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 354 ACTCAGAACTCAGCTCGGCTTTTCCGCTACATCAATGGAAACACTCCTAAAGCCAAATGG 413
Query 427 GTCACAGCTGAGAAACTGACTGCTTATTGTTTCGTCAAGACTAACAAAGGAGATGAAGAT 486
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 414 GTCACAGCTGAGAAACTGACTGCTTATTGTTTCGTTAAGACTAACAAAGGAGATGAAGAT 473
Query 487 GATGAAGACGACGATGAGAACGGAGATGTGGAAAACGAATGGTGGATTTTGAAAGTCGGA 546
|||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||||||
Sbjct 474 GATGAAGACGACGATGAGAATGGAGATGTGGACAACGAATGGTGGGTTTTGAAAGTCGGA 533
Query 547 AGCAAGATCCGTGAAAAGGTATCAGATGAAATGCAATTGAAAGCTTATAAAGATCAACGC 606
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 534 AGCAAGATCCGTGAAAAGGTTTCAGATGAAATGCAATTGAAGGCTTATAAAGATCAACGC 593
Query 607 CGTGTTGATTTCGTTGCTAAAGCTGTTTGGGCTATGAAATTCGCCAGCAGTGAAGATTTT 666
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 594 CGTGTTGATTTCGTTGCTAAAGCTGTTTGGGCTATGAAATTCGCCAGCAGTGAAGATTTT 653
Query 667 TCGGTTTTTGTAAGCAGCTATAACAATTGCTTGTTTGAGAACAATCATGGTGTTGAGTTT 726
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 654 TCGGTTTTTGTAAGCAGCTATAACAATTGCTTGTTTGAGAACAATCATGGGGTTGAGTTT 713
Query 727 AATGAGGCTAACAAGGCAAAAATCTATGGGAAAGATTTCATTGGGTGGGCTAATCCTGAA 786
|||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 714 AATGAGGCCAATAAGGCAAAAATCTATGGGAAAGATTTCATTGGGTGGGCTAATCCTGAG 773
Query 787 GCTGCTGATGATTCCATGTGGGAAGATGCTGATGATATTTTGCTTCAAAGCCCAGGAGGA 846
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 774 GCTGCTGATGATTCCATGTGGGAAGATGCTGATGATATTTTGCTTCAAAGCCCAGGAGGA 833
Query 847 GGATCTGCAACTCCGGCTAGAGATACACAGGATTTGACTGAGGCCTTTGAAGAAGCTACA 906
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 834 GGATCTGCAACCCCGGCGAGAGATACACAGGATTTGACTGAGGCCTTTGAAGAAGCTACA 893
Query 907 AGTGAGGGCATACATAGCTTAGCTCTAGGTGCTTTAGATAATAGCTTTCTAGTTGGAGAT 966
|||||||||||||| |||||||||||||||||||||||||| |||||||| || ||||||
Sbjct 894 AGTGAGGGCATACACAGCTTAGCTCTAGGTGCTTTAGATAACAGCTTTCTTGTGGGAGAT 953
Query 967 TCTGGTATTCAGGTTTTCAAGAACATGAGACAGGGGATTCAAGGGAAAGGTGTTTGTGTT 1026
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 954 TCTGGTATTCAGGTTTTCAAGAACATGAGGCAGGGGATTCAAGGGAAAGGTGTTTGTGTT 1013
Query 1027 AACTTTGAGCCTGGTTATGGTCGAACTCATTCTTCAGCACCGAAGAAGGCTCTTCTCATG 1086
|||||||| ||||||||||| || ||||||| |||||||||||||||||||||||||||
Sbjct 1014 AACTTTGAACCTGGTTATGGGCGGGCTCATTCCTCAGCACCGAAGAAGGCTCTTCTCATG 1073
Query 1087 AGAGCTGAGACTAATATGCTGCTCATGAGTCCTATGAGCCAAACGCCTCATTCACGAGGT 1146
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1074 AGAGCTGAGACTAACATGCTGCTCATGAGTCCTATGAGCCAAACGCCTCATTCACGAGGA 1133
Query 1147 ATCCATCAGCTTGACATTGAAACCGGGAAAATTATTTCAGAGTGGAAGTTTGAGAAAGAT 1206
||||||||||| ||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 1134 ATCCATCAGCTCGACATTGAAACCGGGAAGGTTATTTCGGAGTGGAAGTTTGAGAAAGAT 1193
Query 1207 GGAGTGGATATCTCTATGAGTGACATTACTAATGATGGTAAAGGTGCTCAATTGGATCCA 1266
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 1194 GGAGTGGATATCTCTATGAGTGACATTACTAATGATGGTAAAGGAGCTCAATTGGACCCA 1253
Query 1267 TCTGCGTCAACGTTTCTTGGTCTGGATAACAATAGGCTTTGCAGGTGGGATATGCGTGAC 1326
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1254 TCTGCGTCAACGTTTCTGGGTCTGGATAACAATAGGCTTTGCAGGTGGGATATGCGTGAC 1313
Query 1327 CGATATGGGATGGTTCAGGATCTTGCTACTGCGAATACTCCAGTCTTGAATTGGGCACAG 1386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1314 CGATATGGGATGGTTCAGGATCTTGCTACTGCGAATACTCCAGTCTTGAATTGGGCACAG 1373
Query 1387 GGGCATCAGTTTTCTAGAGGGACTAACTTTCAGTGCTTTGCAACTACTGGTGATGGCTCA 1446
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1374 GGGCATCAGTTTTCTAGAGGGACTAACTTCCAGTGCTTTGCAACTACTGGTGATGGCTCA 1433
Query 1447 ATTGTTGTTGGCTCTCTTGATGGCAAAATTAGACTCTACTCGAGCAACACTATGAGGCAG 1506
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 1434 ATTGTTGTTGGCTCTCTTGATGGCAAGATTAGACTCTACTCTAGCAACACTATGAGGCAG 1493
Query 1507 GCAAAGACGGCTTTCCCTGGACTTGGTGCACCTGTTACTCATGTGGATGCTACATTCGAT 1566
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1494 GCAAAGACGGCTTTCCCTGGACTTGGTGCACCTGTAACTCATGTGGATGCTACATTCGAT 1553
Query 1567 GGGAAATGGATTGTTGGTACAACTGACACATATTTGATTGTTATCTGTACCCTTTTCACT 1626
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 1554 GGGAAATGGATTGTTGGTACAACTGACACATACTTGATTGTTATCTGTACACTTTTCACT 1613
Query 1627 GACAAAAGTGGCAAAACAAAGACCGGCTTCGAGGGTCGCATGGGAAATAAGATTGCCGCA 1686
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1614 GACAAAAGTGGCAAAACAAAGACTGGCTTCGAGGGTCGCATGGGAAATAAGATTGCCGCA 1673
Query 1687 CCAAGGTTGCTTAAGTTGAGGCCTCTTGATGCACATTTAGCTGGATCTGACAACAAGTTC 1746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1674 CCAAGGTTGCTTAAGTTGAGGCCTCTTGATGCACATTTAGCTGGATCTGACAACAAGTTC 1733
Query 1747 CGCAATGCTCAGTTTTCTTGGGTCACGGAGGATGGGAAACAGGAGCGTCATGTGGTAGCT 1806
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1734 CGCAATGCTCAGTTTTCTTGGGTCACAGAGGATGGGAAACAGGAGCGTCATGTGGTAGCA 1793
Query 1807 ACTGTTGGCAAGTTCAGTGTGATATGGAACTTTCAGCAGGTGAAGAATGGATCTCATGAA 1866
|| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1794 ACCGTTGGAAAGTTCAGTGTGATATGGAACTTTCAGCAAGTGAAGAATGGATCTCATGAA 1853
Query 1867 TGCTACCATGATCAGGAAGGGCTGAAGAAATGCTACTGCTACAAGATAGTCCTTCGAAAT 1926
|||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 1854 TGCTACCATGATCAAGAAGGGCTGAAGAAATGCTACTGCTACAAGATAGTTCTGCGAAAT 1913
Query 1927 GAATCTATAGTGGACAGTCGCTTCATGAATGACAACTTTGCAATCTCTGGTTCACCTGAA 1986
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1914 GAATCTATCGTGGACAGTCGCTTCATGAATGACAACTTTGCAATCTCCGGTTCACCTGAA 1973
Query 1987 GCGCCTTTGGTCATTGCAACGCCTATGAAAGTCAGCTCTTTCAGCTTATCCAGCAAGCGA 2046
|||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||
Sbjct 1974 GCGCCTTTGGTCATTGCAACTCCCATGAAAGTCAGCTCTTTTAGCTTATCCAGCAAGCGA 2033
Query 2047 TGAAACAAGCAAGTGATGGACCGGACCACTAGTTATTTTCATTTGAATTCTAGTCTATTT 2106
|||||||||||||||||||||||||||||||| | |||| |||| ||||||| |||||||
Sbjct 2034 TGAAACAAGCAAGTGATGGACCGGACCACTAGCTCTTTTAATTTAAATTCTATTCTATTT 2093
Query 2107 GTAACCATGTGAAATTACAATGTTCTGGCTCTTAGAACGATGTTAGATTCAGAGATAA-G 2165
|||||||||||||||| || |||||||||| | | | |||||||| || |
Sbjct 2094 GTAACCATGTGAAATTTCATTGTTCTGGCT----G-----T---A--TTCAGAGA-AACG 2138
Query 2166 ACACCTAGCAATGTTGCTAAATTACTTTGGTCTGGCTTTGACTTTTAAGATGTTTGGTCG 2225
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2139 ACATCTAGCAATGTTGCTAAACTACTTTGGTCTGGCTTTGACTTTTAAGATGTTTGGTCG 2198
Query 2226 TATTGTAGACGTTTTATTTTTTCGTTTTC 2254
||||||||||||||| |||||||||||||
Sbjct 2199 TATTGTAGACGTTTTGTTTTTTCGTTTTC 2227
> Ahg479439 jgi|Araly1|479439|fgenesh2_kg.3__2140__AT3G19240.1
Length=2103
Score = 250 bits (135), Expect = 4e-65
Identities = 878/1219 (72%), Gaps = 121/1219 (10%)
Strand=Plus/Plus
Query 751 TATGGGAAAGATTTCATTGGGTGGGCTAATCCTGAAGCTGCTGATGATTCCATGTGGGAA 810
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 698 TATGGGAAAGATTTCATTGGGTGGGCTAATCCTGAAGCTGCTGATGATTCTATGTGGGAG 757
Query 811 GATGCTGATGATATTTTGCTTCAAAGCCC-AGGAGGAGGATCTGCAACTCCGGCTA-GAG 868
|||||||| | ||| || || |||| ||||| ||||| ||| | |||
Sbjct 758 GATGCTGA--A------GCTCCA---CCTGAGGAAGAGGA-----AACTCAGGCCAAGAG 801
Query 869 ATACACAGGATTTGACTGAGGCCTTTGAAGAAGCTA-C-AAGTGAG-GGCA-TACATAGC 924
| | || ||||||||| || | || ||||| | | | || || | || | | || ||
Sbjct 802 AAATAC-GGATTTGACGGAAGAGTTCGAAGAGG-TGGCTAA-TG-GTGG-AGTGCAGAGT 856
Query 925 TT-AGCTCTAGGTGCTTTAGATAATAGCTTTCTAGTTGGA-GATTCTGGTATTCAGGTTT 982
|| | || | || || || |||||| | |||| | || | |||| ||| |||||||||
Sbjct 857 TTGA-CTTTGGGAGCGTTGGATAATT-CATTCTTGGTGAATGATTATGGGGTTCAGGTTT 914
Query 983 -TCAAGAACATG-AGACAG-GGGATTCAAGGGAAAGGTGTTTGTGTTA-ACTTTGAGCCT 1038
| | ||| ||| || | | |||||||| ||||||||||| || || | | ||||| ||
Sbjct 915 AT-AGGAATATGGAG-C-GTGGGATTCATGGGAAAGGTGTGTGCGTGAGA-TTTGATTCT 970
Query 1039 GG---TT-ATGGT-CGAACTCA--TTCTT-C-AG-CA-C-CGAAG-AAGGCTCTTCTCAT 1085
|| || | || || | || ||| | || || | | || ||||||||| | ||
Sbjct 971 GGAAATTCAAAGTTCGGA-TCGGGTTCGAGCCAGACAACACCAAACAAGGCTCTTTTGAT 1029
Query 1086 GAGAGCTGAGACTAATATGCTGCTCATGAGTCC---TATG-A-GCCAAACGCCTCATTC- 1139
||| || |||||||||||| |||| |||||||| || | | |||| | ||||
Sbjct 1030 GAGGGCAGAGACTAATATGATGCTGATGAGTCCAGCTAAACAAGGGAAAC-CAA-ATTCC 1087
Query 1140 ACGAGGTATCCATCAGCTTGACATTGAAACCGGGAAAATTATTTCAGAGTGGAAGTTTGA 1199
|| ||| | | ||||| |||||||| | ||||| ||| || | || ||||| || ||
Sbjct 1088 ACT-GGTGTTAAGCAGCTCGACATTGAGTCAGGGAAGATTGTTACTGAATGGAAATTCGA 1146
Query 1200 GAAAGATGG-AGTGGATATC-TCTATGAGTGACATTACTAATGATGGTAAAGG-TGCTCA 1256
||||||||| | || | ||| | ||||| ||||| || |||||| ||||| | | ||
Sbjct 1147 GAAAGATGGGACTGAA-ATCATG-ATGAGGGACATAACAAATGATACCAAAGGGT-CGCA 1203
Query 1257 ATTGGATCCATCTGCGTCAACGTTTCTTGGTCT-GGATAACAATAGGCTTTG-CAGGTGG 1314
| |||||||| | ||| || ||| |||| | |||| |||||||||| || || |||
Sbjct 1204 GCTAGATCCATCAGAGTCTACCTTT-TTGGGATTGGATGACAATAGGCTGTGTCAA-TGG 1261
Query 1315 GATATGCGTGACCG-ATATGGGATGGTTCAGGATCTTGCTACTGCGAATACTCC-AGTCT 1372
|| ||| | ||| | | | || || || ||| | | | | ||||| |||| | |||
Sbjct 1262 GACATGAGGGACAGGAGA-GGTATAGTGCAGAA-C-----A-T-CGAAT-CTCCCA-TCT 1310
Query 1373 TG-AATTGGGCACAGGGGCATCAGTTTTCTAGAGGGACTAACTTTC-AGTGCTTTGCAAC 1430
|| ||| || | || || ||||||||||||||||| || || |||| |||||||||||||
Sbjct 1311 TGGAAT-GGACTCAAGGCCATCAGTTTTCTAGAGGAACAAA-TTTCCAGTGCTTTGCAAC 1368
Query 1431 TACTGGTGATGGCTCAATTGTTGTTGGCTCTCTTGATGGCAAA-ATTAGACTCTACTCGA 1489
|||||| ||||| ||||||||||| || || ||||| || ||| || || || || || |
Sbjct 1369 TACTGGAGATGGGTCAATTGTTGTGGGATCGCTTGACGG-AAAGATAAGGCTGTATTCAA 1427
Query 1490 -GCAACACTATGAGGCA-GGCAAAGACGGCTTTCCCTGGACTTGGTGCACCTGTTACTCA 1547
| | | | ||||| | |||||| |||||||| || || || ||| |||| |||| ||
Sbjct 1428 AG-ACCTCAATGAGA-ATGGCAAAAACGGCTTTTCCAGGGCTCGGTTCACCAATTACACA 1485
Query 1548 TGTGGATGCTACAT-TCGATGGGAAATGGATTGTTGGT-ACAACTGACACATATTTGATT 1605
|||||| | | | | | ||||| |||||||| |||| ||||| || || || ||| ||
Sbjct 1486 TGTGGACGTTTCTTAT-GATGGAAAATGGATA-TTGGGCACAACAGATACGTACTTGGTT 1543
Query 1606 GTTATCTGTACCCTTTTCACTGACAAA-AGTGG-CAAAACAAAGACCGGCTTCGAG-GGT 1662
|||| || ||||||||||| |||||| | ||| | | |||| || || || || ||
Sbjct 1544 CTTATTTGCACCCTTTTCACAGACAAAGA-TGGTCGGA-CAAAAACAGGATTT-AGCGGA 1600
Query 1663 CGCATGGGAAATAAGATTGCC-GCACCAAGGTTGCTTAAGTTGAGGCCTCTTGATGCACA 1721
| |||||||| || || || || || ||| |||| ||| | | || || ||| ||||
Sbjct 1601 AGAATGGGAAACAAAATA-CCAGCGCCGAGGCTGCTGAAGCTAACACCACTAGATTCACA 1659
Query 1722 TTTAGCTGGATCTGACAACAAGTTCCGCAATG-C--TCAGTTT-TCTTGGGTCACGGAG- 1776
|| || ||| || || ||||| | | || | ||| ||| || ||||| || |||
Sbjct 1660 CTTGGCAGGAAAAGATAATAAGTTTC--A-TGGCGGTCA-TTTCTCATGGGTAACAGAGA 1715
Query 1777 GATGGGAAACAGGAGCGTCATGTGGTAGCTACTGTTGGCAAGTTCAGTGTGATATGGAAC 1836
| ||||| || ||| | ||| | ||||| || || || || |||||||| |||||| ||
Sbjct 1716 GC-GGGAAGCAAGAGAGACATATAGTAGCAACAGTGGGGAAATTCAGTGTAATATGGGAC 1774
Query 1837 TTTCAGCAGGTGAAGAATGGAT-CTCATGAATGCTACCATGATC-AGGAAGGGCTGAAGA 1894
|| ||| ||||||||| | | | || || ||||| | || | | |||| || ||||
Sbjct 1775 TTGGAGCGGGTGAAGAACAG-TGCACACGAGTGCTAT-AGGAACCAACAAGGACTCAAGA 1832
Query 1895 AATGCTACTGCTACAAGAT 1913
|| ||||||||||||||
Sbjct 1833 GCTGTTACTGCTACAAGAT 1851
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87417112275
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5