BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G33410.1
Length=1474
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491349 jgi|Araly1|491349|fgenesh2_kg.7__782__AT4G33410.1 2361 0.0
> Ahg491349 jgi|Araly1|491349|fgenesh2_kg.7__782__AT4G33410.1
Length=1461
Score = 2361 bits (1278), Expect = 0.0
Identities = 1402/1463 (96%), Gaps = 4/1463 (0%)
Strand=Plus/Plus
Query 1 GAAACGTTTGGTCCTTTAGTCGGAGAGACTGATATGCGACAGAGGATCCAACGTCGCGAC 60
|||| ||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 1 GAAAAGTTTGGTCCTTTACTCGGAGAGACTGATATGGGACAGAGGATCCAACGTCGCGAC 60
Query 61 TGAAACCTAGATCCCAATTCTCCGTTTCCACCACTGTCTCTCCTCCGTCGTTAGGGTTTC 120
|||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 61 TGAAACCTAGATCCCAATTCTCCGCTTCGACCACTGTCTCTCCTCCGTCGTTAGGGTTTC 120
Query 121 TCAGGTTCACATCTGTTGGAAACTTATTGCAAC-TCCTAAAGGCATTTCACATATTTGCT 179
||||||||||||||||||||||||||||||||| ||| || || |||||| ||||| |||
Sbjct 121 TCAGGTTCACATCTGTTGGAAACTTATTGCAACGTCC-AACGG-ATTTCATATATTCGCT 178
Query 180 TTTATGCGTACGAGGCTTGGGGGATATTTATATAATCCGAAATAACTCTTTTCTTATCAT 239
| ||||||||||||||||||||||| |||||||||| |||| |||||||||||||||||
Sbjct 179 TATATGCGTACGAGGCTTGGGGGATTTTTATATAATTCGAAGGAACTCTTTTCTTATCAT 238
Query 240 GGAGACTCTGTGGACTCTTTTGTATTTGCTAGAACCTGCTCCAGCTACTCTCATTGTCAC 299
||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 239 GGAGACTCTATGGACTCTTTTGTATCTGCTAGAACCTGCTCCAGCTACTCTCATTGTCAC 298
Query 300 AGCTGTCACCGTGACATTTGCATCCGCTTTCCGTGCACTTAACTACGGGAAAGAGATGGA 359
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 299 AGCTGTCACTGTGACATTTGCATCTGCTTTCCGTGCACTTAACTACGGGAAAGAGATGGA 358
Query 360 GAGAAACCGTGACTTCTCTGAAGCATCCATAACACTAGATAGCTCTCAGGCCTTGATGAT 419
|||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 359 GAGAAATCGTGACTTCTCTGAAACATCCATAACACTAGATAGCTCTCAGGCCTTGATGAT 418
Query 420 CCCAGTTATGAGCTCTTGCAGTTTGCTTCTCATGTTCTATTTGTTCTCTTCTGTTTCTCA 479
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 419 CCCAGTTATGAGCTCTTGCAGTTTGCTTCTCATGTTCTATTTGTTCTCATCTGTTTCTCA 478
Query 480 GCTCCTGACCGCGTTTACAGCCATCGCCTCTGTTTCTTCTCTCTTCTATTGGTTATCACC 539
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 479 GCTCCTGACCGCGTTTACAGCCATCGCCTCTGTTTCATCTCTCTTCTATTGGTTATCACC 538
Query 540 ATATGCGGTATATATGAAGACGCAGCTTGGTCTATCTGATCCCTTTCTTTCACGCTGCTG 599
|||||| ||||||||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct 539 ATATGCTCTATATATGAAGACGCAGCTTGGTCTCTCTGATCCCTTTGTTTCACGCTGCTG 598
Query 600 CTCCAAATCGTTTACAAGAATCCAAGGATTGCTACTTGTGGCTTGTGCTATGACAGTTGT 659
||||||||| |||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 599 CTCCAAATCATTTACAAGAATCCAAGGATTGCTACTTGTGGCTTTTGCCATGACAGTTGT 658
Query 660 GGCATGGCTCATCTCTGGCCATTGGGTGTTGAACAATTTGCTCGGAATCTCCATTTGTAT 719
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 659 GGCATGGCTCATCTCTGGCCATTGGGTGTTGAACAATTTGCTTGGAATCTCCATTTGTAT 718
Query 720 TGCGTTTGTTAGCCATGTTCGTCTTCCTAATATCAAAATCTGTGCAATGCTCCTCGTGTG 779
|||||||| |||||||||||||| || ||||||||||| |||||||||||||| |||||
Sbjct 719 AGCGTTTGTCAGCCATGTTCGTCTGCCCAATATCAAAATATGTGCAATGCTCCTTGTGTG 778
Query 780 TCTCTTTGTATATGACATATTCTGGGTTTTCTTCTCTGAGAGATTCTTTGGTGCTAACGT 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 TCTCTTTGTATATGACATATTCTGGGTTTTCTTCTCTGAGAGATTCTTTGGTGCTAACGT 838
Query 840 TATGGTGGCCGTGGCAACCCAGCAAGCATCAAACCCAGTTCACACAGTGGCTAACAGTTT 899
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 839 TATGGTGGCCGTGGCAACCCAGCAAGCCTCAAACCCAGTTCACACAGTAGCTAACAGTTT 898
Query 900 GAATCTTCCTGGACTGCAATTGATCACAAAGAAACTGGAACTACCTGTTAAAATTGTGTT 959
|||||||||||||||||||||||||||||||||||||||||| || || |||||||||||
Sbjct 899 GAATCTTCCTGGACTGCAATTGATCACAAAGAAACTGGAACTGCCAGTAAAAATTGTGTT 958
Query 960 TCCTCGGAACCTATTGGGCGGTGTGGTGCCCGGTGTGAGTGCCTCAGATTTCATGATGCT 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 TCCTCGGAACCTATTGGGCGGTGTGGTGCCCGGTGTGAGTGCCTCAGATTTCATGATGCT 1018
Query 1020 TGGTCTTGGTGACATGGCTATCCCTGCAATGCTTTTGGCTTTGGTCCTCTGCTTTGACCA 1079
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1019 TGGTCTTGGTGACATGGCTATCCCTGCAATGCTTTTGGCTTTGGTCCTCTGTTTTGACCA 1078
Query 1080 TCGAAAAACTAGAGATGTGGTGAATATTTTTGATCTAAAATCTTCCAAGGGACACAAATA 1139
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1079 TCGAAAAACTAGAGATGTGGTGAATATCTTTGATCTAAAATCTTCCAAGGGACACAAATA 1138
Query 1140 CATTTGGTATGCACTTCCCGGATATGCCATTGGCTTGGTGGCGGCTCTAGCTGCAGGTGT 1199
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 CATATGGTATGCACTTCCCGGATATGCCATTGGCTTGGTGGCGGCTCTAGCTGCAGGTGT 1198
Query 1200 CTTGACCCACTCACCTCAGCCAGCTCTACTTTATCTGGTACCATCTACGTTAGGACCGGT 1259
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 CTTGACTCATTCACCTCAGCCAGCTCTACTTTATCTGGTACCATCTACGTTAGGACCGGT 1258
Query 1260 GATCTTCATGTCATGGCGGAGAAAGGATCTTGCGGAGCTGTGGGAAGGACCTGCATTATC 1319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 GATCTTCATGTCATGGCGGAGAAAGGATCTTGCGGAGCTGTGGGAAGGACCTGCATTATC 1318
Query 1320 TAATCCCATTGAGAAATCTCATGAAATAGAGATCTGAGTTTATTATATCAATCAAGATGA 1379
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 1319 CAATCCCATTGAGAAATCTCATGAAATAGAGATCTGAGTTTATAATATCAATCAAGATTA 1378
Query 1380 TTCAGAAATCTAAAACATATTACATAAAACAAAGACGCTTAGTAGGAAA-ACATCAGATC 1438
||||||| |||||||||| ||||||||||||||||| ||||||||| | |||| |||
Sbjct 1379 TTCAGAAGCCTAAAACATAATACATAAAACAAAGACGTTTAGTAGGAGCGATATCAAATC 1438
Query 1439 AAGAATTCTTGTATTCTTAAGTT 1461
|||| ||||||||||||||||||
Sbjct 1439 AAGAGTTCTTGTATTCTTAAGTT 1461
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55154674760
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5