BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G33420.1
Length=1197
Score E
Sequences producing significant alignments: (Bits) Value
Ahg944592 jgi|Araly1|944592|scaffold_700821.1 1629 0.0
> Ahg944592 jgi|Araly1|944592|scaffold_700821.1
Length=1020
Score = 1629 bits (882), Expect = 0.0
Identities = 976/1022 (95%), Gaps = 4/1022 (0%)
Strand=Plus/Plus
Query 8 TTAATTATA-CTGATCTTTATCATGTTGACTAGATTTAAGAAACAAAATAATAAGATGGT 66
||||||| | |||||| ||||||||||||| |||||||||| |||||| |||||||||||
Sbjct 1 TTAATTA-AGCTGATCATTATCATGTTGACAAGATTTAAGATACAAAACAATAAGATGGT 59
Query 67 TAGGGCAAATATAGTGAGCATGGTTCTGTTGATGCATGCCATCGTTGGGTTTCCTTTTCA 126
| |||||||| ||||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 60 TGGGGCAAATTTAGTGAGCATGATTCTGTTGATGCATGCCATTGTTGGGTTTCCTTTTCA 119
Query 127 TGCGAGGGGATTAAGTATGACTTACTACATGATGAGCTGTCCTTTCGCTGAACAGATTGT 186
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 TGCGAGGGGCTTAAGTATGACTTACTACATGATGAGCTGTCCTTTCGCTGAACAGATTGT 179
Query 187 GAAGAACAGTGTTAACAATGCTCTTCAAGCCGATCCCACTTTAGCCGCTGGTCTTATCCG 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 GAAGAACAGTGTTAACAATGCTCTTCAAGCCGATCCCACTTTAGCCGCTGGTCTTATCCG 239
Query 247 TATGTTGTTCCACGACTGTTTCATCGAGGGATGTGATGCGTCAATTCTGCTAGATTCAAC 306
|||||||||||| ||||||||||| ||||| ||||| ||||| ||||| |||||||| ||
Sbjct 240 TATGTTGTTCCATGACTGTTTCATAGAGGGGTGTGACGCGTCGATTCTTCTAGATTCTAC 299
Query 307 GAAAGACAACACTGCGGAAAAGGATTCGCCTGCGAATCTGAGTCTACGTGGCTACGAGAT 366
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 300 AAAAGACAACACTGCGGAAAAGGATTCTCCTGCGAATCTGAGTCTACGTGGCTACGAGAT 359
Query 367 CATCGATGATGCAAAGGAGAAAATCGAGAATAGATGTCCAGGAGTTGTATCATGCGCAGA 426
|||||||||||||| |||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 360 TATCGATGATGCAAAACAGAAAATCGAGAATAGATGTCCAGGAGTTGTATCTTGCGCTGA 419
Query 427 TATAGTTGCCATGGCTGCTAGAGATGCTGTCTTTTGGGCTGGTGGTCCATATTATGACAT 486
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 420 TATTGTTGCCATGGCTGCTAGAGATGCTGTCTTTTGGGCTGGTGGTCCATATTATGATAT 479
Query 487 ACCGAAAGGAAGGTTTGATGGTAAAAGATC-AAAGATAGAAGATACAAGAAATCTACCTT 545
||| |||||||||||||||||||||||||| ||| || ||||||||||||||||||||||
Sbjct 480 ACCAAAAGGAAGGTTTGATGGTAAAAGATCGAAA-ATCGAAGATACAAGAAATCTACCTT 538
Query 546 CACCTTTTCTTAATGCCTCTCAACTCATTCAAACTTTTGGCCAACGTGGTTTCACTCCAC 605
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 539 CACCTTTTCTCAATGCCTCTCAACTAATTCAAACTTTTGGCCAACGTGGTTTCACTCCAC 598
Query 606 AAGATGTTGTTGCTCTCTCTGGAGCACATACCCTAGGAGTTGCACGATGCTCCTCCTTCA 665
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 AAGATGTTGTTGCTCTCTCTGGAGCACATACCCTAGGAGTTGCACGATGCTCCTCCTTCA 658
Query 666 AGGCTAGACTTACCGTCCCAGACTCTTCATTAGACTCGACTTTTGCAAACACTCTCTCTA 725
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 659 AGGCTAGACTTACCGTCCCAGATTCTTCATTAGACTCGACTTTTGCAAACACTCTCTCTA 718
Query 726 AAACATGCAGCGCGGGTGACAATGCAGAGCAACCCTTTGATGCTACGCGCAACGATTTCG 785
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 AAACTTGCAGCGCGGGTGACAATGCAGAGCAACCCTTTGATGCTACGCGCAACGATTTCG 778
Query 786 ACAATGCTTACTTCAATGCGCTTCAGATGAAATCAGGAGTCCTCTTTTCAGACCAAACTT 845
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 779 ACAATGCTTACTTCAATGCGCTTCAGATGAAATCAGGAGTCCTCTTTTCGGACCAAACCT 838
Query 846 TATTCAACACACCAAGGACCAGGAATCTTGTTAACGGCTATGCACTTAACCAAGCCAAGT 905
||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||
Sbjct 839 TATTCAACACACCAAGGACCAGGAACCTTGTTAATGGCTATGCCCTTAACCAAGCCAAGT 898
Query 906 TCTTCTTTGATTTCCAACAGGCCATGCGCAAGATGAGCAATCTTGATGTTAAACTTGGCT 965
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 899 TCTTCTTTGATTTCCAACAGGCCATGCGCAAGATGAGCAATCTTGACGTTAAACTTGGCT 958
Query 966 CTCAAGGTGAAGTCCGTCAAAATTGTCGGAGTATTAATTAGGCTAGACCACATCTACTTA 1025
||||||||||| ||||||||||||||||||||||||||||| |||| ||| ||||| |||
Sbjct 959 CTCAAGGTGAAATCCGTCAAAATTGTCGGAGTATTAATTAGCCTAGGCCATATCTATTTA 1018
Query 1026 CG 1027
||
Sbjct 1019 CG 1020
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44680058724
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5