BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G33430.2
Length=2821
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491347 jgi|Araly1|491347|fgenesh2_kg.7__780__AT4G33430.1 2593 0.0
Ahg931117 jgi|Araly1|931117|scaffold_303574.1 1267 0.0
Ahg319434 jgi|Araly1|319434|fgenesh1_pm.C_scaffold_3002450 929 0.0
> Ahg491347 jgi|Araly1|491347|fgenesh2_kg.7__780__AT4G33430.1
Length=2444
Score = 2593 bits (1404), Expect = 0.0
Identities = 1565/1639 (95%), Gaps = 25/1639 (2%)
Strand=Plus/Plus
Query 1064 TGCGTCTTAATAACAATAGCTTATCTGGAGAAATTCCAAGGTCTTTGACTGCTGTCCTGA 1123
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 816 TGCGTCTTAATAACAATAGCTTATCTGGAGAAATTCCAAGGTCTCTGACTGCTGTCCTGA 875
Query 1124 CGCTACAAGTTCTGGATCTCTCAAACAATCCTCTCACCGGAGATATTCCTGTTAATGGTT 1183
|||| |||||||||||||||||||| ||| |||||| ||||||||||||||||||||||
Sbjct 876 CGCTGCAAGTTCTGGATCTCTCAAATAATGGTCTCACTGGAGATATTCCTGTTAATGGTT 935
Query 1184 CCTTTTCACTTTTCACT-C----C-AATCAGTTTTGCCAACACCAAGTTGACTCCCCTTC 1237
||||||||||||||||| | | ||||||||||||||||||||||||||||||||||
Sbjct 936 CCTTTTCACTTTTCACTCCTGGTCTCATCAGTTTTGCCAACACCAAGTTGACTCCCCTTC 995
Query 1238 CTGCATCTCCACCGCCTCCTATCTCTCCTACACCGCCATCACCTGCAGGGAGTAATAGAA 1297
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 996 CTGCATCTCCGCCGCCTCCTATCTCTCCTACACCGCCATCACCTGCAGGGAGTAATAGAA 1055
Query 1298 TTACTGGAGCGATTGCGGGAGGAGTTGCTGCAGGTGCTGCACTTCTATTTGCTGTTCCGG 1357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1056 TTACTGGAGCGATTGCGGGAGGAGTTGCTGCAGGTGCTGCACTTCTATTTGCTGTTCCGG 1115
Query 1358 CCATTGCACTAGCTTGGTGGCGAAGGAAAAAGCCGCAGGACCACTTCTTTGATGTACCAG 1417
|||||||||| |||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 1116 CCATTGCACTTGCTTGGTGGCGAAGGAAAAAACCACAGGACCACTTCTTTGATGTACCAG 1175
Query 1418 CTGAAGAGGACCCAGAAGTTCATTTAGGACAACTGAAGAGGTTTTCATTGCGTGAACTAC 1477
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1176 CTGAAGAGGACCCAGAGGTTCATTTAGGACAACTCAAGAGGTTTTCATTGCGTGAACTAC 1235
Query 1478 AAGTTGCTTCGGATAATTTTAGCAACAAG-AACATATTGGGTAGAGGTGGTTTTGGTAAA 1536
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 1236 AAGTTGCTTCGGATAATTTTAGCAAC-AGAAACATATTGGGTAGAGGTGGTTTTGGTAAA 1294
Query 1537 GTTTATAAAGGACGGTTAGCTGATGGTACTTTAGTGGCCGTTAAAAGGCTAAAAGAGGAG 1596
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1295 GTTTATAAAGGACGGTTAGCTGATGGTACTTTAGTGGCGGTTAAAAGGCTAAAAGAGGAG 1354
Query 1597 CGCACCCAAGGTGGCGAACTGCAGTTCCAGACAGAGGTTGAGATGATTAGTATGGCGGTT 1656
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1355 CGCACCCAAGGTGGTGAACTGCAGTTCCAGACCGAGGTTGAGATGATTAGTATGGCGGTT 1414
Query 1657 CACAGAAACTTGCTTCGGCTTCGTGGATTTTGCATGACTCCAACCGAAAGATTGCTTGTT 1716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1415 CACAGAAACTTGCTTCGGCTTCGTGGATTTTGCATGACTCCAACCGAAAGATTGCTTGTT 1474
Query 1717 TATCCCTACATGGCTAATGGAAGTGTTGCCTCCTGTTTAAGAGAACGTCCCGAGTCCCAG 1776
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1475 TATCCCTACATGGCTAATGGAAGTGTTGCCTCCTGTTTAAGAGAACGTCCTGAGTCCCAG 1534
Query 1777 CCACCACTTGATTGGCCAAAGAGACAGCGTATTGCGTTGGGATCTGCAAGAGGGCTTGCG 1836
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1535 CCACCACTTGATTGGCCAAAGAGACAGCGTATTGCGTTGGGATCTGCAAGAGGGCTTGCA 1594
Query 1837 TATTTACATGATCATTGCGACCCAAAGATTATTCATCGAGATGTGAAAGCTGCAAATATT 1896
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1595 TATTTACATGATCATTGTGACCCAAAGATTATTCATCGAGATGTGAAAGCTGCAAATATT 1654
Query 1897 TTGTTGGATGAAGAGTTTGAAGCCGTGGTTGGGGATTTTGGACTTGCAAAACTCATGGAC 1956
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1655 TTATTGGATGAAGAGTTTGAAGCCGTGGTTGGGGATTTTGGACTTGCAAAACTCATGGAC 1714
Query 1957 TACAAAGACACACATGTGACAACCGCAGTGCGTGGGACAATTGGTCATATAGCCCCTGAG 2016
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1715 TACAAAGACACACACGTGACAACCGCAGTGCGTGGTACAATTGGTCATATAGCCCCTGAG 1774
Query 2017 TACCTTTCCACTGGAAAATCATCAGAGAAAACCGATGTCTTTGGGTATGGAGTCATGCTT 2076
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1775 TACCTTTCTACAGGAAAATCATCAGAGAAAACCGATGTCTTTGGGTATGGAGTCATGCTT 1834
Query 2077 CTTGAGCTTATCACTGGACAAAGGGCTTTTGATCTTGCTCGCCTCGCGAATGATGATGAT 2136
||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||||
Sbjct 1835 CTTGAGCTTATCACTGGACAAAGGGCTTTCGATCTTGCTCGCCTTGCAAATGATGATGAT 1894
Query 2137 GTCATGTTACTAGACTGGGTGAAAGGGTTGTTAAAAGAGAAGAAATTGGAAGCACTAGTA 2196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1895 GTCATGTTACTAGACTGGGTGAAAGGGTTGTTAAAAGAGAAGAAATTGGAAGCACTAGTA 1954
Query 2197 GATGTTGATCTTCAGGGTAATTACAAAGACGAAGAAGTGGAGCAGCTAATCCAAGTGGCT 2256
||||||||||||||||| ||||||| ||||||||||||||||||||| || |||||||||
Sbjct 1955 GATGTTGATCTTCAGGGGAATTACATAGACGAAGAAGTGGAGCAGCTGATTCAAGTGGCT 2014
Query 2257 TTACTCTGCACTCAGAGTTCACCAATGGAAAGACCCAAAATGTCTGAAGTTGTAAGAATG 2316
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2015 CTGCTCTGCACTCAGAGTTCACCAATGGAAAGACCCAAAATGTCTGAAGTTGTAAGAATG 2074
Query 2317 CTTGAAGGAGATGGTTTAGCTGAGAGATGGGAAGAGTGGCAAAAGGAGGAAATGTTCAGA 2376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2075 CTTGAAGGAGATGGTTTAGCTGAGAGATGGGAAGAGTGGCAAAAGGAGGAAATGTTCAGA 2134
Query 2377 CAAGATTTCAACTACCCAACCCACCATCCAGCCGTGTCTGGCTGGATCATTGGCGATTCC 2436
||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||
Sbjct 2135 CAAGATTTCAACTACCCAACCCATCATCCAGCCGTATCTGGCTGGATCATTGGTGATTCC 2194
Query 2437 ACTTCCCAGATCGAAAACGAATACCCCTCGGGTCCAAGATAAGATTCGAAACACGAAtgt 2496
|||||||||||||||||||| ||||||||||||||||||||| || |||| ||||||||
Sbjct 2195 ACTTCCCAGATCGAAAACGAGTACCCCTCGGGTCCAAGATAATATCCGAA-CACGAATGC 2253
Query 2497 tttttctgtattttgt-ttttct--ctgtatttattgagggttttAGCTTCTGCTGCTCC 2553
|||||||||||||| | |||| | ||||||||| |||||| ||||| ||||||||||||
Sbjct 2254 TTTTTCTGTATTTTTTATTTTATTTCTGTATTTAATGAGGGCTTTAGTTTCTGCTGCTCC 2313
Query 2554 ATATTATTGGTT----CTTAAGTGAATACATGAGGATCAGATTGGGTTTGTAAGTGTTAT 2609
|||||||||||| |||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 2314 ATATTATTGGTTGGTTCTTAAGTGAATACACGAGGATCTGATTGGGTTTGTAAGTGTTAT 2373
Query 2610 ATGATGAAAAAGGATTTGAATGTTGTTGAAAGCTAAAACCCAAACATGTCT-TAAGCTCA 2668
|||| |||| | |||||||||||||||||||||||||||||||||||||| || | | |
Sbjct 2374 ATGA--AAAA-GAATTTGAATGTTGTTGAAAGCTAAAACCCAAACATGTCTCTAGG-T-A 2428
Query 2669 CCACTTGAGGATTGTTGCG 2687
| |||||||||||||||
Sbjct 2429 C---TTGAGGATTGTTGCG 2444
Score = 1000 bits (541), Expect = 0.0
Identities = 765/863 (89%), Gaps = 56/863 (6%)
Strand=Plus/Plus
Query 71 tctctctT-TGT-TTCGACCCTTTTTTAGTATATTTCCAGGAAATATCTTCTTCCTCCTT 128
|||||||| | | | ||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct 10 TCTCTCTTCTCTCTCCGACCCTTTTTTAGTATATTTTCAGGAAATATCTTCTTCCT-CTT 68
Query 129 TCGTTTTCTC-TATCTCAGTTTTCTCTCTTCTCAGCATTAAGTAGTCAACGGTCAGCGAT 187
|||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 69 TCGTTTTCTCTTATCTCAGTTTTCTCTCTTCTCAGCA--AAGTAGTCAACGGTCAGCGAT 126
Query 188 CTCGGCGTTCCTTCTAATCGGAAAAGTCTAGCTTCAGTTTCtttttttttt-gctttttt 246
||||||||| ||||||||||||||| | | || | |||| | || | | |||
Sbjct 127 CTCGGCGTTTCTTCTAATCGGAAAATT-T---TTGA-TTTCCTCGATTAATCGATTTGAG 181
Query 247 GGTTTCCGCGATTAATCGATTTGGGTATTTTGATTTTCTCTTCAAATTAAGTCAACGGGT 306
||||| || || || | | || || ||||||||||||||||||||| |
Sbjct 182 GGTTTT-----TT--TC--TTC---T-TCTT--TT--CTCTTCAAATTAAGTCAACGGAT 224
Query 307 GGATACGCGTTGAGAGGGCTTTTCTCGTATTCTGCTTCTAATTTCATCATCTTGGTATTA 366
| |||||||||||| || |||||||| | | || |||||||||||||||| ||
Sbjct 225 GAATACGCGTTGAG-GG-CTTTTCTC-T-T-CT------AATTTCATCATCTTGGGGTTT 273
Query 367 CCTTGTGTGGGTGGT-AGCTTAATCGAAGGATTCGAGATCCCTTTTATCAGGGGTTTTAA 425
|||||||||| | || ||||||||||| ||||||||||||||||||| |
Sbjct 274 CCTTGTGTGG-TAGTTAGCTTAATCGA-GGATTCGAGATCCCTTTTA-C----------- 319
Query 426 CAATGATGGATTTTCTCTGATGAGGGATAGTTCTAGGGTTTGTTTTTAATCTCTTGAGGA 485
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 320 CAATGATGGATTTTCTCTGATGAGGGAGAGTTCTAGGGTTTGTTTTTAATCTCT-GAGGA 378
Query 486 TAAAATGGAACGAAGATTAATGATCCCTTGCTTCTTTTGGTTGATTCTCGTTTTGGATTT 545
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 379 TAAAATGGAACGAAGATTGATGATCCCTTGCTTCTTTTGGTTGATTCTCGTTTTGGATTT 438
Query 546 GGTTCTCAGAGTCTCGGGCAACGCCGAAGGTGATGCTCTAAGTGCACTGAAAAACAGTTT 605
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 439 GGTTCTCAGAGTCTCGGGCAACGCCGAAGGTGATGCTCTGAGTGCACTGAAAAACAGTTT 498
Query 606 AGCCGACCCTAATAAGGTGCTTCAAAGTTGGGATGCTACTCTTGTTACTCCATGTACATG 665
||| ||||| || |||||||||||||| |||||||| |||||||| ||||||||||||||
Sbjct 499 AGCTGACCCCAACAAGGTGCTTCAAAGCTGGGATGCGACTCTTGTCACTCCATGTACATG 558
Query 666 GTTTCATGTTACTTGCAATAGCGACAATAGTGTTACACGTGTTGACCTTGGGAATGCAAA 725
|||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||
Sbjct 559 GTTTCATGTTACTTGCAATAGCGATAATAGCGTTACACGTGTTGACCTTGGCAATGCAAA 618
Query 726 TCTATCTGGACAGCTCGTAATGCAACTTGGTCAGCTTCCAAACTTGCAGTACTTGGAGCT 785
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 619 TCTATCTGGACAGCTCGTAATGCAACTTGGTCAGCTTCCAAACTTGCAGTACTTGGAGCT 678
Query 786 TTATAGCAATAACATTACTGGGACAATCCCAGAACAGCTTGGAAATCTGACGGAATTGGT 845
||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct 679 TTATAGCAATAACATTACTGGGACAATCCCAGAGCAGCTTGGAAATTTGACGGAATTGGT 738
Query 846 GAGCTTGGATCTTTACTTGAACAATTTAAGCGGGCCTATTCCATCAACTCTCGGCCGACT 905
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 739 GAGCTTGGATCTTTACTTGAACAATTTAAGCGGTCCTATCCCATCAACTCTCGGCCGACT 798
Query 906 TAAGAAACTCCGTTTCTTGAGTC 928
||||||||||||||||||| |||
Sbjct 799 TAAGAAACTCCGTTTCTTGCGTC 821
> Ahg931117 jgi|Araly1|931117|scaffold_303574.1
Length=1903
Score = 1267 bits (686), Expect = 0.0
Identities = 1192/1434 (83%), Gaps = 44/1434 (3%)
Strand=Plus/Plus
Query 1064 TGCGTCTTAATAACAATAGCTTATCTGGAGAAATTCCAAGGTCTTTGACTGCTGTCCTGA 1123
||||||||||||||||||||||||| ||||||||||||| | |||||||||||| |||
Sbjct 475 TGCGTCTTAATAACAATAGCTTATCAGGAGAAATTCCAATGACTTTGACTGCTG---TGA 531
Query 1124 CGCTACAAGTTCTGGATCTCTCAAACAATCCTCTCACCGGAGATATTCCTGTTAATGGTT 1183
||| |||||||||||| |||||||||||| || | ||||||||||||||||||||||
Sbjct 532 AGCTGCAAGTTCTGGATATCTCAAACAATCGGCTTAGTGGAGATATTCCTGTTAATGGTT 591
Query 1184 CCTTTTCACTTTTCACTCCAATCAGTTTTGCCAACACCAAGTTGAC-TCCCCTTCCTGCA 1242
||||||| || |||||||| || |||||| || | || || || | || | ||| |
Sbjct 592 CCTTTTCGCTCTTCACTCCTATTAGTTTTAAGAATAATAACTTAACGGCGCC-TGCTGAA 650
Query 1243 TCTCCACC-GCCTCCTATC-TCTCCTACACCGCCATCACCTGCAGGGAGTAATAGAATTA 1300
|||| || | ||| | | |||||||| || ||| ||||| |||||||| | ||| |
Sbjct 651 CCTCCGCCTACTTCC-A-CTTCTCCTACGCCACCACCACCTTCAGGGAGT--CA-AATGA 705
Query 1301 CTGGAGCGATTGC-GGGAGGAGTTGCTGCAGGTGCTGCACTTCTATTTGCTGTTCCGGCC 1359
||| ||| || || ||| ||||||||||||||||| ||||||||||||||||| || |||
Sbjct 706 CTGCAGCAATAGCAGGG-GGAGTTGCTGCAGGTGCAGCACTTCTATTTGCTGTCCCAGCC 764
Query 1360 ATTGCACTAGCTTGGTGGCGAAGGAA-AAAGCCGCAGGACCACTTCTTTGATGTACCAGC 1418
||||| | |||||||||| | ||| ||| || ||||||||||| ||||||||||| ||
Sbjct 765 ATTGCGTTTGCTTGGTGGCTCA-GAAGAAAACCACAGGACCACTTTTTTGATGTACCTGC 823
Query 1419 TGAAGAGGACCCAGAAGTTCATTTAGGACAACTGAAGAGGTTTTCATTGCGTGAACTACA 1478
|||||| |||||||| ||||||||||||||||| || |||||| | |||||||||||
Sbjct 824 TGAAGAAGACCCAGAGGTTCATTTAGGACAACTCAAAAGGTTTACCTTGCGTGAACTGTT 883
Query 1479 AGTTGCTTCGGATAATTTTAGCAACAAGAACATATTGGGTAGAGGTGGTTTTGGTAAAGT 1538
||||||| | ||||| |||||||| || || ||||||||||||||||||||||||||||
Sbjct 884 AGTTGCTACAGATAACTTTAGCAATAAAAATGTATTGGGTAGAGGTGGTTTTGGTAAAGT 943
Query 1539 TTATAAAGGACGGTTAGCTGATGGTACTTTAGTGGCCGTTAAAAGGCTAAAAGAGGAGCG 1598
||||||||||| ||||| ||||| | | ||||||| || |||||||||||||| || ||
Sbjct 944 GTATAAAGGACGTTTAGCCGATGGCAATCTAGTGGCTGTGAAAAGGCTAAAAGAAGAACG 1003
Query 1599 CACCCAA-GGTGGCGAACTGCAGTTCCAGACAGAGGTTGAGATGATTAGTATGGCGGTTC 1657
| |||| ||||| ||||||||||| || || |||||||||||||| |||||||| ||||
Sbjct 1004 TA-CCAAGGGTGGGGAACTGCAGTTTCAAACCGAGGTTGAGATGATCAGTATGGCCGTTC 1062
Query 1658 ACAGAAACTTGCTTCGGCTTCGTGGATTTTGCATGACTCCAACCGAAAGATTGCTTGTTT 1717
| || |||||||||||||||||||| ||||||||||||||||| |||||||| |||||||
Sbjct 1063 ATAGGAACTTGCTTCGGCTTCGTGGCTTTTGCATGACTCCAACTGAAAGATTACTTGTTT 1122
Query 1718 ATCCCTACATGGCTAATGGAAGTGTTGCCTCCTGTTTAAGAGAACGTCCCG-AGTCCCAG 1776
||||||||||||| |||||||||||||| || ||||||||||| ||||| | || | |
Sbjct 1123 ATCCCTACATGGCCAATGGAAGTGTTGCTTCATGTTTAAGAGAGCGTCCTGAAG-GCAAT 1181
Query 1777 CCACCACTTGATTGGCCAAAGAGACAGCGTATTGCGT-TGGGATCTGCAAGAGGGCTTGC 1835
|||||||||||||||||||| ||| ||| |||||| | ||||||| ||||||||||| ||
Sbjct 1182 CCACCACTTGATTGGCCAAAAAGAAAGCATATTGC-TCTGGGATCAGCAAGAGGGCTCGC 1240
Query 1836 GTATTTACATGATCATTGCGACCCA-AAGATTATTCATCGAGATGTGAAAGCTGCAAATA 1894
||||||||||||||| || || ||| || || ||||| || |||||||||||||||||||
Sbjct 1241 GTATTTACATGATCACTGTGA-CCAGAAAATCATTCACCGGGATGTGAAAGCTGCAAATA 1299
Query 1895 TTTTGTTGGATGAAGAGTTTGAAGCCGTGGTTGGGGATTTTGGACTTGCAAAACTCATGG 1954
| ||||| ||||||||||||||||| || ||||| |||||||| || |||||| | |||
Sbjct 1300 TATTGTTAGATGAAGAGTTTGAAGCTGTTGTTGGAGATTTTGGGCTCGCAAAATTAATGA 1359
Query 1955 ACTACAAAGACA-CACATGTGACAACCGCAGTGCGTGGGACAATTGGTCATATAGCCCCT 2013
| ||||| || | | ||||||||||| || || ||||| |||||||| ||||||||||||
Sbjct 1360 ATTACAACGA-ATCCCATGTGACAACTGCTGTACGTGGTACAATTGGCCATATAGCCCCT 1418
Query 2014 GAGTACCTTTCCACTGGAAAATCATCAGAGAAAACCGATGTCTTTGGGTATGGAGTCATG 2073
||||||||||| || |||| ||| || |||||||| ||||| |||||||| || ||||||
Sbjct 1419 GAGTACCTTTCGACAGGAACATCTTCTGAGAAAACTGATGTTTTTGGGTACGGGGTCATG 1478
Query 2074 CTTCTTGAGCTTATCACTGGACA-AAGGGCTTTTGATCTTGCTCGCCTCGCGAATGATGA 2132
||||| ||||| ||||||||||| || ||||||||||||||||| || || ||||||||
Sbjct 1479 CTTCTCGAGCTCATCACTGGACAGAA-AGCTTTTGATCTTGCTCGGCTTGCTAATGATGA 1537
Query 2133 TGATGTCATGTTACTAGACTGGGTGAAAG-GGTTGTTAAAAGAGAAGAAATTGG-AAGCA 2190
|||| |||||||||| ||||||||||||| | |||| ||||||||||| |||| ||||
Sbjct 1538 TGATATCATGTTACTCGACTGGGTGAAAGAAG-TGTTGAAAGAGAAGAAGTTGGAAAGC- 1595
Query 2191 CTAGTAGATGTTGATCTTCAGGGTAATTACAAAGACGAAGAAGTGGAGCAGCTAATCCAA 2250
|| || || | || ||| | || || ||| || | ||||||||||||||| || |||
Sbjct 1596 CTTGTTGACGCAGAGCTTGAAGGAAAGTACGTGGAAGCAGAAGTGGAGCAGCTGATTCAA 1655
Query 2251 GTGGCTTTACTCTGCACTCAGAGTTCACCAATGGAAAGACCCAAA-ATGTCTGAAGTTGT 2309
||||| | ||||||||||| ||||| |||||||| | ||||| ||||| ||||| ||
Sbjct 1656 ATGGCTCTGCTCTGCACTCAAAGTTCTGCAATGGAACG-TCCAAAGATGTCAGAAGTGGT 1714
Query 2310 AAGAATGCTTGAAGGAGATGGTTTAGCTGAGAGATGGGAAGAGTGGCAAAAGGAGGAAAT 2369
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1715 GAGAATGCTGGAAGGAGATGGTTTAGCTGAGAGATGGGAAGAGTGGCAAAAGGAGGAGAT 1774
Query 2370 GTTCAG-ACAAGATTTCAACTACCCAACCC-A-CCATCCA-GCCGTGT-CTGGCTGGATC 2424
| || ||| ||||| || || | || || | || || | || | | ||| ||| ||
Sbjct 1775 GC-CAATACATGATTTTAATTATC-AAGCCTATCC-TC-ATGCTG-GCACTGAATGGCTC 1829
Query 2425 ATTGGCGATTCCACTTCCCAGATCGAAAACGAATACCCCTCGGGTCCAAGATAA 2478
|| | |||||| ||||| ||||||||||| |||||||| ||||||||||||
Sbjct 1830 ATCCCCTATTCCAATTCCCTTATCGAAAACGATTACCCCTCAGGTCCAAGATAA 1883
Score = 278 bits (150), Expect = 2e-73
Identities = 319/397 (80%), Gaps = 25/397 (6%)
Strand=Plus/Plus
Query 549 TCTCAGAGTCTCGGGC-AACGCCGAAGGTGATGCTCTAAGTGCA-CTGAAAAACAGTTTA 606
|||||||||| | || |||| ||||||||||||| ||| | || |||| ||||||||||
Sbjct 92 TCTCAGAGTCGC-CGCAAACGTCGAAGGTGATGCTTTAACT-CAGCTGAGAAACAGTTTA 149
Query 607 GC--C----GA-CC--CTAATAAGGTGCTTCAAAGTTGGGATGCTACTCTTGTTACTCCA 657
| | || || | || || || || ||||| ||||||||||||||||||||||||
Sbjct 150 TCATCAGGTGACCCAGCAAACAATGTACTCCAAAGCTGGGATGCTACTCTTGTTACTCCA 209
Query 658 TGTACATGGTTTCATGTTACTTGCAATAGC-GACAATAGTGTTACACGTGTTGACCTTGG 716
||||||||||||||||||||||||||| | || |||| ||||| ||||||||||||||
Sbjct 210 TGTACATGGTTTCATGTTACTTGCAATC-CTGAGAATAAAGTTACTCGTGTTGACCTTGG 268
Query 717 GAATGCAAATCTATCTGGACAGCTCGTAATGCA-A-CTTGGTCAGCTTCCAAACTTGCAG 774
||||||||| ||||||||| | || || | || | |||||||||||| | |||||||||
Sbjct 269 GAATGCAAAACTATCTGGAAAACTGGT--TCCAGAACTTGGTCAGCTTTCTAACTTGCAG 326
Query 775 TACTTGGAGCTTTATAGCAATAACATTACTGGG-ACAATCCCAGAACAGCTTGGAAATCT 833
||||||||||||||||||||||||||||||||| | | | || || ||||||| || ||
Sbjct 327 TACTTGGAGCTTTATAGCAATAACATTACTGGGGAGA-TACCTGAGGAGCTTGGCAA-CT 384
Query 834 -GACGGAATTGGTGAGCTTGGATCTTTACTTGAACAATTTAAGCGGGCCTATTCCATCAA 892
|| |||| | || ||||||||||||||| ||||| |||| || || || || ||
Sbjct 385 TGATGGAACTAGTAAGCTTGGATCTTTACGCGAACAGCATAAGTGGTCCCATCCCTTCGT 444
Query 893 CTCTCGGCCGACTTAAGAAA-CTCCGTTTCTTGAGTC 928
|||| ||| ||| | |||| ||||| |||||| |||
Sbjct 445 CTCTTGGCAAACT-AGGAAAACTCCGGTTCTTGCGTC 480
> Ahg319434 jgi|Araly1|319434|fgenesh1_pm.C_scaffold_3002450
Length=1797
Score = 929 bits (503), Expect = 0.0
Identities = 930/1135 (82%), Gaps = 34/1135 (3%)
Strand=Plus/Plus
Query 1361 TTGCACTAGCTTGGTGG-CG-AAGGAAAAAGCCGCAGGACCACTTCTTTGATGTACCAGC 1418
|||| || ||||||||| | || | |||| | |||||| ||||| ||||||||||| |
Sbjct 680 TTGCGCTTGCTTGGTGGATGAAAAG-AAAA-CTGCAGGATCACTTTTTTGATGTACCTGT 737
Query 1419 TGAAGAGGACCCAGAAGTTCATTTAGGACAACTGAAGAGGTTTTCATTGCGTGAACTACA 1478
||| || || ||||| ||||||||||||||| | || |||||||| ||||||||||| |
Sbjct 738 TGAGGAAGATCCAGAGGTTCATTTAGGACAATTTAAAAGGTTTTCCTTGCGTGAACTGCT 797
Query 1479 AGTTGCTTCGGATAATTTTAGCAACAAG-AACATATTGGGTAG-AGGTGGTTTTGGTAAA 1536
||||||| | || || |||||||| ||| || |||||||| | ||| |||||||||||
Sbjct 798 AGTTGCTACAGAGAAATTTAGCAA-AAGAAATGTATTGGGT-GAAGGACGTTTTGGTAAA 855
Query 1537 GTTTATAAAGGACGGTTAGCTGATGG-TACTTTAGTGGCCGTTAAAAGGCTAAAAGAGGA 1595
|| ||||||||||| ||||| ||||| | || ||||||| || |||||||||| ||| ||
Sbjct 856 GTGTATAAAGGACGTTTAGCCGATGGCT-CTCTAGTGGCTGTGAAAAGGCTAAGAGAAGA 914
Query 1596 GCGCACCCAA-GGT-GGCGAACTGCAGTTCCAGACAGAGGTTGAGATGATTAGTATGGCG 1653
| | |||| ||| || ||||||||||||| || |||||||||||||| ||||||||
Sbjct 915 ATGTA-CCAAGGGTAGG-AAACTGCAGTTCCAAACTGAGGTTGAGATGATCAGTATGGCC 972
Query 1654 GTTCACAGAAACTTGCTTCGGCTTCGTGGATTTTGCATGACTCCAACCGAAAGATTGCTT 1713
||||| || |||||||||||||||| ||| ||||||||||||||||| |||||||| |||
Sbjct 973 GTTCATAGGAACTTGCTTCGGCTTCATGGTTTTTGCATGACTCCAACTGAAAGATTACTT 1032
Query 1714 GTTTATCCCTACATGGCTAATGGAAGTGTTGCCTCCTGTTTAAGAGAACGTCCCGA-GTC 1772
|||||||||||||||||||||||||||||||| || ||||||| ||||||||| || | |
Sbjct 1033 GTTTATCCCTACATGGCTAATGGAAGTGTTGCTTCTTGTTTAAAAGAACGTCCTGAAGGC 1092
Query 1773 CCAGCCACCACTTGATTGGCCAAAGAGACAGCGTATTGCGTTGGGATCTGCAAGAGGGCT 1832
| ||||||||||||||| |||| ||| || |||||| |||||||| ||||| |||||
Sbjct 1093 A-ATCCACCACTTGATTGGGCAAAAAGAAAGAATATTGCTTTGGGATCAGCAAGGGGGCT 1151
Query 1833 TGCGTATTTACATGATCATTGCGACCCAAAGATTATTCATCGAGATGTGAAAGCTGCAAA 1892
|||||| ||||||||||| || ||| ||| || ||||| || |||||||||||||| ||
Sbjct 1152 CGCGTATCTACATGATCATGGCAACCAAAAAATCATTCACCGGGATGTGAAAGCTGCGAA 1211
Query 1893 TATTTTGTTGGATGAAGAGTTTGAAGCCGTGGTTGGGGATTTTGGACTTGCAAAACTCAT 1952
||| ||||| ||||||||||||||||| || ||||| |||||||| || |||||| | ||
Sbjct 1212 TATATTGTTAGATGAAGAGTTTGAAGCTGTTGTTGGAGATTTTGGGCTCGCAAAATTAAT 1271
Query 1953 GGACTACAAAGACACACATGTGACAACCGCAGTGCGTGGGACAATTGGTCATATAGCCCC 2012
| | || || ||| | ||||||||||| || || || || ||| |||| |||||||| ||
Sbjct 1272 GAATTATAACGACTCCCATGTGACAACTGCGGTACGCGGTACATTTGGCCATATAGCTCC 1331
Query 2013 TGAGTACCTTTCCACTGGAAAATCATCAGAGAAAACCGATGTCTTTGGGTATGGAGTCAT 2072
||||||| |||| || |||||||| || |||||||| ||||| ||||| || || |||||
Sbjct 1332 TGAGTACTTTTCGACAGGAAAATCTTCTGAGAAAACTGATGTTTTTGGATACGGGGTCAT 1391
Query 2073 GCTTCTTGAGCTTATCACTGGACA-AAGGGCTTTTGATCTTGCTCGCCTCGCGAATGATG 2131
|||||| ||||| ||||||||||| || | |||| ||||||||||| || || |||||||
Sbjct 1392 GCTTCTCGAGCTCATCACTGGACAGAAAG-CTTTCGATCTTGCTCGGCTTGCTAATGATG 1450
Query 2132 ATGATGTCATGTTACTAGACTGGGTGAAAG-GGTTGTTAAAAGAGAAGAAATTGGAA-GC 2189
||||| |||||||||| ||||||||||||| |||| || ||||||||||| |||||| ||
Sbjct 1451 ATGATATCATGTTACTCGACTGGGTGAAAGAGGTT-TTGAAAGAGAAGAAGTTGGAAAGC 1509
Query 2190 ACTAGTAGATGTTGATCTTCAGGGTAATTACAAAGACGA-AGAAGTGGAGCAGCTAATCC 2248
|| || || | || ||| | || || ||| || | ||||||||||||||| || |
Sbjct 1510 -CTTGTTGACGCAGAGCTTGAAGGAAAGTACGTGGAA-ACAGAAGTGGAGCAGCTGATTC 1567
Query 2249 AAGTGGCTTTACTCTGCACTCAGAGTTCACCAATGGAAAGACCCAAAATGTCTGAAGTTG 2308
|| ||||| | ||||||||||| ||||| | |||||| | ||||| ||||| ||||| |
Sbjct 1568 AAATGGCTCTGCTCTGCACTCAAAGTTCTGCGATGGAACGTCCCAAGATGTCAGAAGTAG 1627
Query 2309 TAAGAATGCTTGAAGGAGATGGTTTAGCTGAGAGATGGGAAGAGTGGCAAAAGGAGGAAA 2368
| |||||||| ||||||||||||||||||||| |||||||||| |||||||||||||| |
Sbjct 1628 TGAGAATGCTGGAAGGAGATGGTTTAGCTGAGCGATGGGAAGACTGGCAAAAGGAGGAGA 1687
Query 2369 TGTTCAG-ACAAGATTTCAACTACCCAACCC-A-CCATCCA-GCCGTGT-CTGGCTGGAT 2423
|| || ||| ||||| || || | || || | || || | || | | ||| |||| |
Sbjct 1688 TGC-CAATACATGATTTTAATTATC-AAGCCTATCC-TC-ATGCTG-GCACTGACTGGCT 1742
Query 2424 CATTGGCGATTCCACTTCCCAGATCGAAAACGAATACCCCTCGGGTCCAAGATAA 2478
||| | |||||| ||||| ||||||||||| |||||||| ||||||||||||
Sbjct 1743 CATCCCCTATTCCAATTCCCTTATCGAAAACGATTACCCCTCAGGTCCAAGATAA 1797
Score = 289 bits (156), Expect = 9e-77
Identities = 343/431 (80%), Gaps = 21/431 (5%)
Strand=Plus/Plus
Query 509 TCCC-TTGCTTCT-TTTGGTTGATTCTCGTTT-TGGATTTGGTTCTCAGAGTCTCGGGCA 565
|||| | |||| | ||||| ||||||| ||| | |||||||||||||||||| | || |
Sbjct 16 TCCCGTGGCTT-TATTTGGCTGATTCT-ATTTCTCGATTTGGTTCTCAGAGTCACCGGAA 73
Query 566 ACGC-CGAAGGTGATGCTCTAAGTGCACTGAA-AAACAGTTTAGCCGACCCTAATAAGGT 623
|| | | ||| |||||||||| ||| || || | ||||||| | |||||||| || ||
Sbjct 74 ACACAC-AAGTTGATGCTCTATCTGCTCT-AAGAGTCAGTTTATCTGACCCTAACAATGT 131
Query 624 GCTTCAAAGTTGGGATGCT-ACTCTTGTTACTCCATGTACAT-GGTTTCATGTTACTTGC 681
|||||||| ||| ||| | |||| ||||||||||||| ||| ||||| || | ||||||
Sbjct 132 ACTTCAAAGCTGGAATG-TCACTCATGTTACTCCATGTTCATGGGTTT-ATATAACTTGC 189
Query 682 AATAGCGACAATAGTGTTACACGTGTTGACCTTGGG-AATGCAAATCTATCTGGACAGCT 740
||||| || || |||||||| |||||||||| |||| |||| |||||||||||| | ||
Sbjct 190 AATAGTGAAAACAGTGTTACTCGTGTTGACC-TGGGAAATGTTAATCTATCTGGAGAACT 248
Query 741 CGTAATGCAACTTGGTCAGCTTCCAAACTTGCAGTACTTGGAGCTTTATAGCAATAACAT 800
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 249 GGTGCCACAGCTTGGTCAGCTTCCAAACTTGCAGTACTTGGAGCTTTATAGCAATAACAT 308
Query 801 TACTGGG-ACAATCCCAGAACAGCTTGGAAATCT-GACGGAATTGGTGAGCTTGGATCTT 858
||||||| | | | || || ||||||| || || || |||| | || ||||||||||||
Sbjct 309 TACTGGGGAGA-TACCTGAGGAGCTTGGCAA-CTTGATGGAACTAGTAAGCTTGGATCTT 366
Query 859 TACTTGAACAATTTAAGCGGGCCTATTCCATCAACTCTCGGCCGACTTAAGAAA-CTCCG 917
||| ||||| |||| || || || || || |||| ||| ||| | |||| |||||
Sbjct 367 TACGCGAACAGCATAAGTGGTCCCATCCCTTCGTCTCTTGGCAAACT-AGGAAAACTCCG 425
Query 918 TTTCTTGAGTC 928
|||||| |||
Sbjct 426 GTTCTTGCGTC 436
Score = 159 bits (86), Expect = 8e-38
Identities = 133/155 (86%), Gaps = 5/155 (3%)
Strand=Plus/Plus
Query 1064 TGCGTCTTAATAACAATAGCTTATCTGGAGAAATTCCAAGGTCTTTGACTGCTGT-CCTG 1122
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 431 TGCGTCTTAATAACAACAGCTTATCTGGAGAAATTCCAAGGTCTTTGACTGCTGTGCC-- 488
Query 1123 ACGCTACAAGTTCTGGATCTCTCAAACAATCCTCTCACCGGAGATATTCCTGTTAATGGT 1182
|| | || | ||||||| |||||||||||| |||| |||||||||||||| ||||||
Sbjct 489 AC--TGCAGGATCTGGATGTCTCAAACAATCGGCTCAGTGGAGATATTCCTGTAAATGGT 546
Query 1183 TCCTTTTCACTTTTCACTCCAATCAGTTTTGCCAA 1217
|| ||||| | |||||| | || |||||||||||
Sbjct 547 TCTTTTTCGCAGTTCACTTCTATTAGTTTTGCCAA 581
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 106462234775
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5