BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G33440.1
Length=1734
Score E
Sequences producing significant alignments: (Bits) Value
Ahg328395 jgi|Araly1|328395|fgenesh1_pm.C_scaffold_7000622 2300 0.0
> Ahg328395 jgi|Araly1|328395|fgenesh1_pm.C_scaffold_7000622
Length=1428
Score = 2300 bits (1245), Expect = 0.0
Identities = 1369/1430 (96%), Gaps = 4/1430 (0%)
Strand=Plus/Plus
Query 81 ATGGAACCGGAGAAGAATCCGACCACAGTATTGAGTGCCATTACAAGACCTTCGTGGGCG 140
|||||| ||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 1 ATGGAATCGGAGAAGAATCCCACCACAGTATTGAGCGCCATTACAAGACCTTCGTGGGCG 60
Query 141 TTTCTTCTCCTTGTTTTCACCGTCTTAGCGAttctctctctccaaatctcttccaattct 200
|||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 61 TTTCTTCTCCTTGTTTTCACTGCCTTAGCGATTCTCTCTCTCCAAATCTCTTCCAATTCT 120
Query 201 tttctccctctctGGATCCCGACTTCTCAATATGACGACCCTGTTACCTGCTCCGGGTTT 260
||| ||||| ||||||||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct 121 TTTATCCCTATCTGGATCCCGACTTCTCAATATCACGACCCGGTTACCTGCTCCGGGTTT 180
Query 261 TTCAATCACGACCCGTTCCCTAACCGGATCGTTATGTCGATTACCGATTTCGGCGGTGTT 320
||||| || ||||||||||| ||||||| || ||||||||||||||||||||||| ||
Sbjct 181 TTCAACCATGACCCGTTCCCGAACCGGAAAGTCATGTCGATTACCGATTTCGGCGGCGTA 240
Query 321 GGAGACGG-AAAGACGTCGAACACGGCCGCTTTCCGCCGCGCCGTAAGGCACCTTGAAGG 379
|||||||| ||| ||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct 241 GGAGACGGCAAA-ACGTCGAACACGGAGGCTTTCCGCCGCGCCGTACGGCACCTTGAAGG 299
Query 380 TTTTGCGGCGGAGGGTGGGGCCCAGCTCAATGTCCCGGA-GGGCACGTGGCTTTCTGGAA 438
||||||||| |||||||||||||||||||||||||| || |||| ||||||| |||||||
Sbjct 300 TTTTGCGGCCGAGGGTGGGGCCCAGCTCAATGTCCC-GATGGGCTCGTGGCTCTCTGGAA 358
Query 439 GCTTCAACCTCACCAGCAATTTCACGCTCTTTCTCGAACGCGGCGCTCTCATTTTGGGAT 498
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 359 GCTTCAACCTCACCAGCAATTTCACGCTCTTTCTCCAACGCGGCGCTGTCATTTTGGGAT 418
Query 499 CCAAGGACCTAGACGAATGGCCGATAATAGAGCCATTGCCTTCTTATGGAAGAGGGAGAG 558
|||||||||||||||||||||| ||| |||||||||||||||||||||||||||| ||||
Sbjct 419 CCAAGGACCTAGACGAATGGCCAATAGTAGAGCCATTGCCTTCTTATGGAAGAGGCAGAG 478
Query 559 AGAGACCTGGTGGTAGACACATCAGCCTCATTCATGGAGACAATCTCACTAATGTTGTCA 618
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 479 AGAGACCTGGTGGTAGACACATTAGCCTCATTCATGGAGACAACCTCACTAATGTTGTCA 538
Query 619 TTACAGGAGAAAATGGGACAATTGATGGACAGGGGAAAATGTGGTGGGAGTTATGGTGGA 678
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 539 TTACAGGAGAAAATGGGACAATTGATGGACAGGGGAAAATGTGGTGGGAGCTATGGTGGA 598
Query 679 ACAGAACATTGGTGCATACGAGAGGCCATCTTATTGAACTCAAGAACTCTCATAATATCC 738
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 599 ACAGAACATTGGTGCATACGAGAGGCCATCTTATTGAACTCAAGAACTCTCATAATATTC 658
Query 739 TCATCTCTAACCTCACTTTGCTCAATTCTCCTTTCTGGACAATCCATCCTGTTTATTGCA 798
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 TCATCTCTAACCTCACTTTGCTCAATTCTCCTTTCTGGACAATCCATCCTGTTTATTGCA 718
Query 799 GTAATGTTGTTATTAGAAATATGACCATCCTTGCTCCGATGAATGCTCCTAACACCGACG 858
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 719 GTAATGTTGTTATTAGAAATATGACCATCCTTGCTCCGATGAATGCTCCTAACACCGATG 778
Query 859 GTATAGATCCAGACTCAAGCACCAATGTCTGCATTGAGGATTGTTACATCGAAAGTGGTG 918
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||
Sbjct 779 GTATAGATCCAGACTCAAGCACCAATGTCTGCATTGAGGACTGTTACATTGAAAGCGGTG 838
Query 919 ATGATCTTGTAGCTGTAAAGAGCGGGTGGGATCAATATGGAATGGCTGTGGCACGTCCGA 978
|||| ||||||||||| |||||||||||||| || ||||||||||||||||| |||||||
Sbjct 839 ATGACCTTGTAGCTGTGAAGAGCGGGTGGGACCAGTATGGAATGGCTGTGGCCCGTCCGA 898
Query 979 GTTCAAACATCGTAATCCGAAGAATCTCTGGTACTACTCGCACTTGTTCAGGAGTTGGGA 1038
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 899 GTTCAAACATCGTAATCCGAAGGATCTCTGGTACTACTCGCACTTGTTCAGGAGTTGGAA 958
Query 1039 TAGGCAGTGAGATGTCTGGTGGGATTTTCAACATAACCGTTGAAGATATTCACGTCTGGG 1098
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 959 TAGGCAGTGAGATGTCTGGTGGGATTTTCAACATAACCGTCGAAGATATTCACGTCTGGG 1018
Query 1099 ATTCTGCGGCTGGGCTCCGCATAAAAACAGATAAAGGGAGAGGTGGGTACATTTCGAATA 1158
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1019 ATTCTGCGGCCGGGCTCCGCATAAAAACAGATAAAGGGAGAGGCGGGTACATTTCGAATA 1078
Query 1159 TCACCTTTAATAATGTGTTATTGGAGAAAGTGAAAGTTCCGATTAGATTCAGCAGTGGCT 1218
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 TCACCTTTAATAATGTGTTATTGGAGAAAGTGAAAGTTCCGATTAGATTCAGCAGTGGCT 1138
Query 1219 CAAATGATCACTCAGACGATAAATGGGATCCGAAAGCTCTTCCGAGAGTAAAAGGGATTT 1278
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 CAAATGATCACTCGGACGACAAATGGGATCCGAAAGCTCTTCCGAGAGTAAAAGGGATTT 1198
Query 1279 ACATTAGCAATGTTGTGAGTCTGAATTCGAGAAAGGCCCCTATGTTGCTCGGTGTTGAAG 1338
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1199 ACATTAGCAATGTTGTGAGTCTGAATTCAAGAAAGGCCCCTATGTTGCTCGGTGTTGAAG 1258
Query 1339 GCACATCGTTTCAAGACGTATGCTTGAGGAATGTTACGCTTCTTGGGTTACCGAAGACCG 1398
|||| |||||||||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct 1259 GCACTTCGTTTCAAGACGTATGCTTAAGGAATGTTACGCTTCTTGGGTTACCGCAGACCG 1318
Query 1399 AGAAATGGAAATGCAAGGATGTTTCTGGTTACGCGAGTGACGTTTTTCCTCTGTCATGTC 1458
||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||
Sbjct 1319 AGAAATGGAAATGCAAGGATGTTTCAGGGTACGCGAGTGATGTTTTTCCTCTGTCATGTC 1378
Query 1459 CACAGTTGTTGCAGAAGAAAGGTTCAATAGCTCAGTGTTCATATAGATGA 1508
||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 1379 CACAGTTGTTGCAGAAGAAAGGTTCGATATCTCAGTGTTCATATAGATGA 1428
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65058138460
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5